GBrowse Details

Vigan.06G169700.01

Basic Information:
Name: Vigan.06G169700.01
Multiple alignment
Variant Information
Position: Chr06:30280102..30281471 (+ strand)
Length: 1370
Functional Information:
Description: Similar to Stress responsive A/B Barrel Domain. [XP_007015930.1, Theobroma cacao]
InterPro: Dimeric alpha-beta barrel (IPR011008)
Stress responsive alpha-beta barrel (IPR013097)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.14,1.74,42.93,1.22,0.08,51.45,13.12,67.87
Automatic updates:
Name: NM_001249229 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max stress-response A/B barrel domain-containing protein (LOC100306003), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:30280102..30280430 (+ strand)
Length: 329
Type: five_prime_UTR
Position: Chr06:30280431..30280549 (+ strand)
Length: 119
Type: CDS
Position: Chr06:30281045..30281243 (+ strand)
Length: 199
Type: CDS
Position: Chr06:30281244..30281471 (+ strand)
Length: 228
Type: three_prime_UTR

>Vigan.06G169700.01 class=Sequence position=Chr06:30280102..30281471 (+ strand)
GGCCAACACA TAACTCAAAC TTCTAGAGGG AAATGACCCC AAAGCTGTGT CCTTCATGCA CAATGACAAT TACACCAGAC
AACTTTTACT GTGCAAATAT GGAGAAGAAG TTGCACCATG GTGGGTCTAT GTTTCAAACC AGTACCTTTC CTCATATTCA
ACCGTGGATT ATGTCCCCAA TTACTTTTTT GCGGTGAAAT TGGTCTTTTA TGATCACAGT GTACAAATAG GGACTGTAAA
ATAGTTTTTG CCTGCATGAT GTAGCTTTTC TGCATATATA TGTGGCTCCT AGCAACTACA CTTTTGGTTA TAAGACTTGT
GTTGCAGCTA TGGGATCTTT TAATCACTAT GTGATTGTTA AGTTTAAGGA TGGTGTGGAA GTTGAAGAAC TCATTCAAGG
GTTGGAGAAG ATGGCATCTG AAATTGATCA AGTCAAATCC TTTGAATGGT ATAAAACTAT ATCTTGCTTT ACTTTATTTC
AAGATGGCTG CGTTCTTCTT TCTCTTAAAG ACTTACTTTT CTGCATTTAC ATGACTGGTT AATACTTCTG TGTGTGATCT
ATGAATAGGG TATCACTTTA TATAACGTTT TATTGATTTT TGGTATATCA GTTGTCAAAG ATAACCTTTT AGATATATAG
TAAATGAAAA ACACAACCAG TAAAGGTTGT ATATATGATC CTTAACCTTT TTAGGCTATT TTTGCATACA TGCATGATTT
TTCTTTAATT TAGTATTATC AAAGTTAAAA AGTATGTGTC TATAGACACA CTTAAACAAA GTTTAAATAC TTTACAAAAT
AAAAAATTTA TAAATTTATT AAGGTTTTGG ATTGAAGGTA TTGTGTTTTT CCAATTTTTC TATGTTTTTG AAAGATTGAT
AAAACATTTA GTAAATAATT ATTGATATGC TAAGACTAGG TTTGATTCAT GTTTGTATGA CAGGGGAAAG GACATAGAAA
GCCATGAAAT GCTAAGACAA GGTTTCACTC ATGTTTTCTT GATGGCATTC AATGGAAAAG AGGAGTTCAA TGCATTTCAG
ACTCATCCCA ATCATGTTGA GTTCTCAGGA GTGTTTTCAC CAGCTATTGA GAAGATTGTG GTGCTGGATT TTCCATCTAA
GCTTGTCAAA GCACCAGCAT GATCCTCAAC TTATTCAAGC AATTAAACTT TCCATCTTTA AAGTGCATGC ATGCGTGTGC
ATCTGTTATG GTTGTTCCTA GTATTCCTAC ATGTTCTTGT GCAATTTCAA CTCTCCTTTT TTCCTGATTA ATGAAAGTTC
TGGCAGTTCA ATTGGTTAAT ACTATGAAAA TGTTTCATGT GGAAAACAGC AAGATCTAAT ACTATTAATT CTCTCCATGT
TTCTACCGCA 

>Vigan.06G169700.01
GGCCAACACA TAACTCAAAC TTCTAGAGGG AAATGACCCC AAAGCTGTGT CCTTCATGCA CAATGACAAT TACACCAGAC
AACTTTTACT GTGCAAATAT GGAGAAGAAG TTGCACCATG GTGGGTCTAT GTTTCAAACC AGTACCTTTC CTCATATTCA
ACCGTGGATT ATGTCCCCAA TTACTTTTTT GCGGTGAAAT TGGTCTTTTA TGATCACAGT GTACAAATAG GGACTGTAAA
ATAGTTTTTG CCTGCATGAT GTAGCTTTTC TGCATATATA TGTGGCTCCT AGCAACTACA CTTTTGGTTA TAAGACTTGT
GTTGCAGCTA TGGGATCTTT TAATCACTAT GTGATTGTTA AGTTTAAGGA TGGTGTGGAA GTTGAAGAAC TCATTCAAGG
GTTGGAGAAG ATGGCATCTG AAATTGATCA AGTCAAATCC TTTGAATGGG GAAAGGACAT AGAAAGCCAT GAAATGCTAA
GACAAGGTTT CACTCATGTT TTCTTGATGG CATTCAATGG AAAAGAGGAG TTCAATGCAT TTCAGACTCA TCCCAATCAT
GTTGAGTTCT CAGGAGTGTT TTCACCAGCT ATTGAGAAGA TTGTGGTGCT GGATTTTCCA TCTAAGCTTG TCAAAGCACC
AGCATGATCC TCAACTTATT CAAGCAATTA AACTTTCCAT CTTTAAAGTG CATGCATGCG TGTGCATCTG TTATGGTTGT
TCCTAGTATT CCTACATGTT CTTGTGCAAT TTCAACTCTC CTTTTTTCCT GATTAATGAA AGTTCTGGCA GTTCAATTGG
TTAATACTAT GAAAATGTTT CATGTGGAAA ACAGCAAGAT CTAATACTAT TAATTCTCTC CATGTTTCTA CCGCA

>Vigan.06G169700.01
ATGGGATCTT TTAATCACTA TGTGATTGTT AAGTTTAAGG ATGGTGTGGA AGTTGAAGAA CTCATTCAAG GGTTGGAGAA
GATGGCATCT GAAATTGATC AAGTCAAATC CTTTGAATGG GGAAAGGACA TAGAAAGCCA TGAAATGCTA AGACAAGGTT
TCACTCATGT TTTCTTGATG GCATTCAATG GAAAAGAGGA GTTCAATGCA TTTCAGACTC ATCCCAATCA TGTTGAGTTC
TCAGGAGTGT TTTCACCAGC TATTGAGAAG ATTGTGGTGC TGGATTTTCC ATCTAAGCTT GTCAAAGCAC CAGCATGA

>Vigan.06G169700.01
MGSFNHYVIV KFKDGVEVEE LIQGLEKMAS EIDQVKSFEW GKDIESHEML RQGFTHVFLM AFNGKEEFNA FQTHPNHVEF
SGVFSPAIEK IVVLDFPSKL VKAPA*