GBrowse Details

Vigan.06G169200.01

Basic Information:
Name: Vigan.06G169200.01
Multiple alignment
Variant Information
Position: Chr06:30211179..30215005 (+ strand)
Length: 3827
Functional Information:
Description: Similar to RAB6-interacting golgin-like. [XP_004487521.1, Cicer arietinum]
InterPro: Transcriptional activator, plants (IPR007033)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.59,1.80,1.74,1.88,0.16,0.79,1.46,7.20
Arabidopsis thaliana homolog: AT2G27740.1
Automatic updates:
Name: NM_001251620 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499699 (LOC100499699), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254446 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100796368 (LOC100796368), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:30211179..30212281 (+ strand)
Length: 1103
Type: five_prime_UTR
Position: Chr06:30212282..30212539 (+ strand)
Length: 258
Type: CDS
Position: Chr06:30212927..30213037 (+ strand)
Length: 111
Type: CDS
Position: Chr06:30213890..30213970 (+ strand)
Length: 81
Type: CDS
Position: Chr06:30214068..30214142 (+ strand)
Length: 75
Type: CDS
Position: Chr06:30214143..30215005 (+ strand)
Length: 863
Type: three_prime_UTR

>Vigan.06G169200.01 class=Sequence position=Chr06:30211179..30215005 (+ strand)
GAAAAATATT ATCTTAAAAA TGAAAGATGA TTATAAGATA ATGCTGTGTT TTCACTTTTC ACTTTTCACA CCTAGATTCA
TCGAGTGGAA CTCAATGGTG CTTGGCCCAG TGTAATGCGA GTGAGCAATT ATTTAGAACA TAAGCTGGAA GCTCCTCTCT
TACAGTGCCA AGCTGTGTGA GTATGTGACT TTCTGTTCCA GAAAATGCAT TTTTGGGCTG GTCGTCCATA TGGGTAATAA
TTTTCTATAA AGGCAACTGG GTACTGCCAG TTCTCCTACT CTGTCTTGCT TCCTAAGGCT CTCCCACATT CAAGCTTTAT
ATATCAGTAG GTGACCCTTT CTGTTCACTC CTCAACCAAA ACTTATGGTC CAAGCACTTT TCTATCTTAA AGAAAGCACT
TATATAATTA CCAATGCTCC TTAGAAACTT CTTAAGAAAA ATACCTATAT ATATGCTACC TTAAAAGATC TAAAAATATT
TGCCATATTA AAAGTGGTAA AAAGATGATA TGATCCTCCA AGTTACCTTG GGGAAGCAGG TATATAGCTA CATATATACA
CGCGTCTGTG TAAATTTTTT GGTCCATACA TCAACTATTG ATACCATGTT GAGGAACAGT CGTTAGCTGA ATATGCCAAT
ATACCAACTT GAGAAAATTG CTACCTAACC AAAGCACTCT CATAAAGATT CTTCACTAAG TTTTCAGAGA ATAATAAAAG
GAGAAGTGTA GTCAAAGATT AACATTTATA CTCTCAACGT ATAACACCTT CCAAATCCAA TACTAGAACT TTGATGGTGC
CATAATCAAG TTGGCTTGTG AATAAAGTTG ACAGGGAAAA CACTAAGTAT TTGTTTAGAG AAGATAAATC CACTGTTAAC
TTCATAGCTT TTGGCAGTCA TATCTGTCAT TTGGGCTTAT TCTAAGGTTT GTTAACAACA CAAACTACTT GCTCTCACAC
CCTTAAAGCC AGTCCTGTTT ATAAGCACCT TAGGGGAAAG TGGAGCCATC ATTCCAAGGA AAAGAGAAAA AAAAAACAGA
GAAAGAAAAC GGGAGATAAC AGGCCTGGGA GAGGAAAAGA GTGTTATTGA CTGTGGTGCA ATAATGGCAA CACCAAAACA
GCCATATGAG CAACACCAAC AACAAACAAA TGTGCAGCGT GTGAGAAATT CAGGGATGAT TAACGTCAAC CAGAGTCCAA
TGAGGGATGA CAAGGAAGAG GAGATGTCAA GATCAGCTTT GGCAATGTTC AGAGCAAAGG AAGAAGAAAT TGAGAGGAAG
AAAATGGAGG TGAGGGATAA GGTTCACGCT TATCTGGGTC GAGTAGAGGA GGAAACAAAA CGCTTGGCTG AGATTAGAGA
AGTAAGTGTC ACAATGCTTT TGGCTTACCT CTAAGCTTTC ATGCTTTATT TGTTTTCTGT TCTTTTGTGT TTTACATATA
AATCAATATA CAGCGTGTTT GGTTCCACAT TCCAATAGGT ATAGTTTCTA TCTCTCAGAC CTGATTTCTA GCTTCTCTTC
CCAAACACGC CAATAAACTT AAGGTATAGG GAAAAATATA CTAATCTGAT CAGAAAGTTT GTTTCCTTTT AATTTTCTCA
AAATCTTCAA GTGATGATCA GAAACTGGGC AATTGCTGTG TCATGTGTGC TGTGTATTGG TTATTTTTCC TTGTTCTTGG
ACAAGTACTT ATAACATGTC ACCATATTTG AATAGTAATT GTTTGAAAAA CTGAATACGA TGTTGTAGGA GCTTGAGGGT
CTGACAGATC CATTGAGGAA GGAAGTTGCA ATGGTTAGAA AGAAGATAGA CAGTGTGAAC AAAGAGTTAA AGCCACTGGG
CCAAACCTGC CAGAGAAAGG TGAAGTTTTC CAACTGTTTA CAGTTGTTTG CTTTTTGACA TTTCTAAAAT CCATTCTTAA
GTGATCCCTA TCTGGTTTAC TTACACAGCT TTTGATACAA ACACTTGAGC ACTGAATAGA ATTTAATCAA TTAGCCATGC
TTGCTTTCTT GGCCCCATGT TGTCTCATCA ACTGAGAGGC AAAGTGGACA TGATTATTTA GTGGTTAAGC TGTTCATTAT
TAATAATTGT GTTCAAATGT CCATGTAGAA AATGATCTAT TTGGTTCAGT GGCAGATTTC AAATTCCTCA TGCTGCTTCT
TTTGCATCAT TATGCCTACA AAAAATTAAA TAAAGAAAAG GGTTGAGGGA AATATGAACC ATAAACCAAT CATAACTCAC
CTTTGTTGAT ACTACTTTAC TTTCAAAAAT GGTTTGACAG ATAACAAGAG AATTAGTTAA GTATTAAATA AAGAAGACTT
AAATATGCTT TTAGTTTCGT AAACGTGAAA TTTCTCTATA TCTCAATCTT TCATATATTT TAGTCTTTAA ACTTTAAAAA
TGAATAGATA TAAGTAATAA TATTAACTTT TTTTTACATG TTAAATATTG TTTCAGAATG ATGTTTGAGT TGTTTACGTC
ACTTACCACT TTCAGCTCAA ATGCTAACCT GAACAGTGTG ATTAACACAA AAAAATTAAC ATCATTAAAT TAGAAAGATT
ATATTCATTC ATTTTCAAAT TTGAGACTAA AATATATTGA ATTTTAAGAC AGACTAATTT CAATTTCGTT TCCAAATTTA
TGGATAAAAA ATACTTAACT GATTTAAACA TAATTTTCAT ATTTTCATTT ATCTCTTTTC TGGACTCACA GGAAAAAGAA
TATAAGGAAG CCCTTGATGC TTTCAATGAG AAAAACAAGG AAAAAGCTCA ACTTGTTACC AAACTAATGG AGGTAAGAAT
TTCTTTGTTG ATTTGAGTGA GTACAAAACT TTCTGAAATT GTTTCGTAAC TTGTCTTTTT TTCTGTTTGT TCCATGAATG
TTGGGATAGC TGGTGACTGA AAGTGAGAAG TTGAGGATGA AGAAGTTGGA GGAGTTAAGC AAAAACGTAG ATACCCTGAA
CTGAAATTAA TGCTAATACA AGTAACCTTA CTTCTGTGTG ATGTAACTAG AACCATGTGG TTGTATTGTA ATGTGACATA
ATTTGTGATT TCATTGTATT TTGAGAATTT GATTAGGAAA TCTGCATTAG ACAGACACCT AAATTCTGAA CATTGCAAAA
GTTCTTGTCA TTTGATTGAG ATGTGTATTC AAACTGAACA TTCAGAAACA TCTATTTTTT TTTGGGTTAA ATATGTATTT
CGTCTCTTAA GTATCACATG ATTTTGGTTT TAGTCCCTAC TCGAAACTTT GATGGTTTTT AGTCCTCATA ATTTTGAAAC
TCTTACTATT AGTCCTTAAA GTTGGATGGC GTTAGCTTTT GTTTGACGTG GCTAATGGTC AGCCCACGTG TCATGTCACC
TGACTACTTT TAATTGATGT GGCAGTAAAG GTGTGGTGGT CGGTCGGCCT GGTGGGAGGT CAGCCACTCG GTCTGGTGGT
CGGCATGGTG GTCTTTGCCC ATAACAGCTC GGTCTTTGCC CAACACCGTT CGGTCTTTTA CATAGTCCGC TTCTATTGTG
TTCTGTTGAT TGTAATAGAA CCCACCAAGC CGACCGACCA CCAGACCGAG TGATCGACCA CCCACCAGAC CGCTACACCT
TTACTGCCAC GTCAATTAAA AATAGTCAGG AAAGGTGACA TCACACGTGG ACTGACAGTT AGCCACATAT ATTAAAAGTT
AACGTCATTC AATTTTAAGG ACTAACACTA AAAGTTTCAA AACTATGAGA ATTAAAAACT ATCAAAGTTT TGAGTATGGT
CTAAAACCAA AATCGCGTTA TAGAGAAAAA CATATTTAAC CTTTTTTTTT ATGAATGAAA ATATTCC

>Vigan.06G169200.01
GAAAAATATT ATCTTAAAAA TGAAAGATGA TTATAAGATA ATGCTGTGTT TTCACTTTTC ACTTTTCACA CCTAGATTCA
TCGAGTGGAA CTCAATGGTG CTTGGCCCAG TGTAATGCGA GTGAGCAATT ATTTAGAACA TAAGCTGGAA GCTCCTCTCT
TACAGTGCCA AGCTGTGTGA GTATGTGACT TTCTGTTCCA GAAAATGCAT TTTTGGGCTG GTCGTCCATA TGGGTAATAA
TTTTCTATAA AGGCAACTGG GTACTGCCAG TTCTCCTACT CTGTCTTGCT TCCTAAGGCT CTCCCACATT CAAGCTTTAT
ATATCAGTAG GTGACCCTTT CTGTTCACTC CTCAACCAAA ACTTATGGTC CAAGCACTTT TCTATCTTAA AGAAAGCACT
TATATAATTA CCAATGCTCC TTAGAAACTT CTTAAGAAAA ATACCTATAT ATATGCTACC TTAAAAGATC TAAAAATATT
TGCCATATTA AAAGTGGTAA AAAGATGATA TGATCCTCCA AGTTACCTTG GGGAAGCAGG TATATAGCTA CATATATACA
CGCGTCTGTG TAAATTTTTT GGTCCATACA TCAACTATTG ATACCATGTT GAGGAACAGT CGTTAGCTGA ATATGCCAAT
ATACCAACTT GAGAAAATTG CTACCTAACC AAAGCACTCT CATAAAGATT CTTCACTAAG TTTTCAGAGA ATAATAAAAG
GAGAAGTGTA GTCAAAGATT AACATTTATA CTCTCAACGT ATAACACCTT CCAAATCCAA TACTAGAACT TTGATGGTGC
CATAATCAAG TTGGCTTGTG AATAAAGTTG ACAGGGAAAA CACTAAGTAT TTGTTTAGAG AAGATAAATC CACTGTTAAC
TTCATAGCTT TTGGCAGTCA TATCTGTCAT TTGGGCTTAT TCTAAGGTTT GTTAACAACA CAAACTACTT GCTCTCACAC
CCTTAAAGCC AGTCCTGTTT ATAAGCACCT TAGGGGAAAG TGGAGCCATC ATTCCAAGGA AAAGAGAAAA AAAAAACAGA
GAAAGAAAAC GGGAGATAAC AGGCCTGGGA GAGGAAAAGA GTGTTATTGA CTGTGGTGCA ATAATGGCAA CACCAAAACA
GCCATATGAG CAACACCAAC AACAAACAAA TGTGCAGCGT GTGAGAAATT CAGGGATGAT TAACGTCAAC CAGAGTCCAA
TGAGGGATGA CAAGGAAGAG GAGATGTCAA GATCAGCTTT GGCAATGTTC AGAGCAAAGG AAGAAGAAAT TGAGAGGAAG
AAAATGGAGG TGAGGGATAA GGTTCACGCT TATCTGGGTC GAGTAGAGGA GGAAACAAAA CGCTTGGCTG AGATTAGAGA
AGAGCTTGAG GGTCTGACAG ATCCATTGAG GAAGGAAGTT GCAATGGTTA GAAAGAAGAT AGACAGTGTG AACAAAGAGT
TAAAGCCACT GGGCCAAACC TGCCAGAGAA AGGAAAAAGA ATATAAGGAA GCCCTTGATG CTTTCAATGA GAAAAACAAG
GAAAAAGCTC AACTTGTTAC CAAACTAATG GAGCTGGTGA CTGAAAGTGA GAAGTTGAGG ATGAAGAAGT TGGAGGAGTT
AAGCAAAAAC GTAGATACCC TGAACTGAAA TTAATGCTAA TACAAGTAAC CTTACTTCTG TGTGATGTAA CTAGAACCAT
GTGGTTGTAT TGTAATGTGA CATAATTTGT GATTTCATTG TATTTTGAGA ATTTGATTAG GAAATCTGCA TTAGACAGAC
ACCTAAATTC TGAACATTGC AAAAGTTCTT GTCATTTGAT TGAGATGTGT ATTCAAACTG AACATTCAGA AACATCTATT
TTTTTTTGGG TTAAATATGT ATTTCGTCTC TTAAGTATCA CATGATTTTG GTTTTAGTCC CTACTCGAAA CTTTGATGGT
TTTTAGTCCT CATAATTTTG AAACTCTTAC TATTAGTCCT TAAAGTTGGA TGGCGTTAGC TTTTGTTTGA CGTGGCTAAT
GGTCAGCCCA CGTGTCATGT CACCTGACTA CTTTTAATTG ATGTGGCAGT AAAGGTGTGG TGGTCGGTCG GCCTGGTGGG
AGGTCAGCCA CTCGGTCTGG TGGTCGGCAT GGTGGTCTTT GCCCATAACA GCTCGGTCTT TGCCCAACAC CGTTCGGTCT
TTTACATAGT CCGCTTCTAT TGTGTTCTGT TGATTGTAAT AGAACCCACC AAGCCGACCG ACCACCAGAC CGAGTGATCG
ACCACCCACC AGACCGCTAC ACCTTTACTG CCACGTCAAT TAAAAATAGT CAGGAAAGGT GACATCACAC GTGGACTGAC
AGTTAGCCAC ATATATTAAA AGTTAACGTC ATTCAATTTT AAGGACTAAC ACTAAAAGTT TCAAAACTAT GAGAATTAAA
AACTATCAAA GTTTTGAGTA TGGTCTAAAA CCAAAATCGC GTTATAGAGA AAAACATATT TAACCTTTTT TTTTATGAAT
GAAAATATTC C

>Vigan.06G169200.01
ATGGCAACAC CAAAACAGCC ATATGAGCAA CACCAACAAC AAACAAATGT GCAGCGTGTG AGAAATTCAG GGATGATTAA
CGTCAACCAG AGTCCAATGA GGGATGACAA GGAAGAGGAG ATGTCAAGAT CAGCTTTGGC AATGTTCAGA GCAAAGGAAG
AAGAAATTGA GAGGAAGAAA ATGGAGGTGA GGGATAAGGT TCACGCTTAT CTGGGTCGAG TAGAGGAGGA AACAAAACGC
TTGGCTGAGA TTAGAGAAGA GCTTGAGGGT CTGACAGATC CATTGAGGAA GGAAGTTGCA ATGGTTAGAA AGAAGATAGA
CAGTGTGAAC AAAGAGTTAA AGCCACTGGG CCAAACCTGC CAGAGAAAGG AAAAAGAATA TAAGGAAGCC CTTGATGCTT
TCAATGAGAA AAACAAGGAA AAAGCTCAAC TTGTTACCAA ACTAATGGAG CTGGTGACTG AAAGTGAGAA GTTGAGGATG
AAGAAGTTGG AGGAGTTAAG CAAAAACGTA GATACCCTGA ACTGA

>Vigan.06G169200.01
MATPKQPYEQ HQQQTNVQRV RNSGMINVNQ SPMRDDKEEE MSRSALAMFR AKEEEIERKK MEVRDKVHAY LGRVEEETKR
LAEIREELEG LTDPLRKEVA MVRKKIDSVN KELKPLGQTC QRKEKEYKEA LDAFNEKNKE KAQLVTKLME LVTESEKLRM
KKLEELSKNV DTLN*