GBrowse Details

Vigan.06G161100.01

Basic Information:
Name: Vigan.06G161100.01
Multiple alignment
Variant Information
Position: Chr06:29400243..29402155 (- strand)
Length: 1913
Functional Information:
Description: Similar to uncharacterized protein At1g08380. [Q949Q5, Arabidopsis thaliana]
InterPro: Photosystem I PsaO (IPR017498)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.84,0.59,206.91,1647.61,0.67,288.52 ,7.12,257.03
Arabidopsis thaliana homolog: AT1G08380.1
Automatic updates:
Name: NM_001249217 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305746 (LOC100305746), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:29400243..29400483 (- strand)
Length: 241
Type: three_prime_UTR
Position: Chr06:29400484..29400574 (- strand)
Length: 91
Type: CDS
Position: Chr06:29401388..29401567 (- strand)
Length: 180
Type: CDS
Position: Chr06:29401662..29401740 (- strand)
Length: 79
Type: CDS
Position: Chr06:29401829..29401904 (- strand)
Length: 76
Type: CDS
Position: Chr06:29401905..29402155 (- strand)
Length: 251
Type: five_prime_UTR

>Vigan.06G161100.01 class=Sequence position=Chr06:29400243..29402155 (- strand)
GCATGCCACA TGTTCTTCCA CATGGACAAT GGTTTTTTCT CTGTGGACAA GAGATTAATG TAGACCCCAC TTTATCTCTA
AACTCCACGT GGCGCAACCT GATTGAGTAA CGTTGGCATT GATGCAAACG CAATCCAAAC CCAATCTAAT TCAAAGGATA
TGAAGAATGG AAAAGAATAT GAAGAATCGG AACCGAAAAA CTAGCACAGC CACTACTTCC TCACACTGGT GATTGAGAGA
GCAGAGCGAA AATGACAACC TCCATGACGA CCGTCGCAGG ATTGGGTGGC GCAACACTGG GCTCCGCCGC ATCTCGTCTG
ACCTCCGGTA CGCTGAACGA AGTTAATAAA ATTGATTTTG ATCGAGAAAA GCATGATGCG AGAGATGATG TTGTGTTTTG
TGAATTGTGT TGCAGGGTTC GTGAGAGCTC CTGTGAGTGC TAGGAATCCC TTGAGACAAG GTGTGGCAAT GGGAAATGGT
GGGAGGGTGA CATGGTAATT TCAGTAAGAG ATTAATTTTC TGTAATTTTT AAATTAAAAG AAAATGGAAA ATGGAATCAA
TCATGACATT TGTGAACGGT GATTGAAGCT TTGAGAGGAA TTGGCTGCGG ACCGATTACA GTGTGATCGG GTTCGGGTTG
ATCGGATGGC TAGCACCTTC CAGCATACCG GCTATCAACG GTAAAAGTCT GACTGGCCTC TTCTTCGACA GCATTGGAGC
TGAGCTTGCT CACTTCCCCA CTCCACCTGC TCTTACTTCC GAGTTCTGGT AAGTTACTTC ATCCTTTCTT TTTTCTTAAA
TAATGGCAAT AATCACACTT ATATTTATTT AGCATACATT ACAAAAATAA AATAATTATA TGAAAATAAA ATAATTATAA
AAGAGTAAAA TTTTACATTT AAAAAAAAAT ATATGGTTTT AAATAAGTAT TTGACTTTTT TAACATTGAA AAACTATATA
ATCAGATGAA AAACTCATAC TAATTTTTGT TCCTAATTTG TTCTTGAAAT GAAAATATTT AAACAGTTTA TTTTACTTCA
AAAATATATT TTAAGATAAA CTTTTCTAAT TGAAGAACCT GTCCTTTACT AAATTAATTT CAACAATAGC TCCAACCAGA
GATATATTTA CAGTTTAAAA GCCCTTACAT TCCTGTTAAC TGATATTTTA ACATATAATT ATTCATGTCA CTTATATTAA
TCAATGAGAC AGGAAGATGA TAATGAGTGC TAGTTAATTT TTTATTTTGG CTAGTTAAGA TTTATAATAG GTTTTTTGTC
TAATTTTAAA GACAAAAATT ATTAAAATAG TGGACTTGGG CTCAGAGTAA AGCCCATTTT GTTCAGTAGT AATGGACCTA
ATAACATTTA AAAATATAAC TAAAATGAAA GTTAGAAAAA GGTCCCACCG AGATTTGAAC TCGGGTTACT GGATTCAGAG
TCCAATGTCC TAACCACTAG ACCATGGGAC CATTGCTGAT TTATAATACA ATTTTTTAAT ATAAATAACT TTATAAAAAT
GTTAAAGCAT TTAGGAAAAG ATAAGACATA ATAATTATTT GTGAGACAAT GTTATTCGCA GGTTATGGCT GGTTACATGG
CACCTTGGGT TGTTCCTGTG TCTCACTTTT GGGCAAATTG GTTTCAAGGG AAGGACTGAA GACTACTTTT GAATTCCAAA
CCTATGGTCT GTTTTTACTT TCTTTTTGTT TTTCCTTTTG TGCCTTGCAA TTGCAATCTA TGCTGTATAA CTCTATATGC
TACCTTTTAC CTTAGAAATC TGTGTAATAT TCATAATGTT GTATATTATT ATTGCTGTTG TACTTTCTGC TTCCTCATCA
ATGTCCCACC TTTTACTCCT ACCAATTTTT TCAAAGGCTA CTCTTTGGTT TCACTAATCT ATCATTGTAT ACA

>Vigan.06G161100.01
GCATGCCACA TGTTCTTCCA CATGGACAAT GGTTTTTTCT CTGTGGACAA GAGATTAATG TAGACCCCAC TTTATCTCTA
AACTCCACGT GGCGCAACCT GATTGAGTAA CGTTGGCATT GATGCAAACG CAATCCAAAC CCAATCTAAT TCAAAGGATA
TGAAGAATGG AAAAGAATAT GAAGAATCGG AACCGAAAAA CTAGCACAGC CACTACTTCC TCACACTGGT GATTGAGAGA
GCAGAGCGAA AATGACAACC TCCATGACGA CCGTCGCAGG ATTGGGTGGC GCAACACTGG GCTCCGCCGC ATCTCGTCTG
ACCTCCGGGT TCGTGAGAGC TCCTGTGAGT GCTAGGAATC CCTTGAGACA AGGTGTGGCA ATGGGAAATG GTGGGAGGGT
GACATGCTTT GAGAGGAATT GGCTGCGGAC CGATTACAGT GTGATCGGGT TCGGGTTGAT CGGATGGCTA GCACCTTCCA
GCATACCGGC TATCAACGGT AAAAGTCTGA CTGGCCTCTT CTTCGACAGC ATTGGAGCTG AGCTTGCTCA CTTCCCCACT
CCACCTGCTC TTACTTCCGA GTTCTGGTTA TGGCTGGTTA CATGGCACCT TGGGTTGTTC CTGTGTCTCA CTTTTGGGCA
AATTGGTTTC AAGGGAAGGA CTGAAGACTA CTTTTGAATT CCAAACCTAT GGTCTGTTTT TACTTTCTTT TTGTTTTTCC
TTTTGTGCCT TGCAATTGCA ATCTATGCTG TATAACTCTA TATGCTACCT TTTACCTTAG AAATCTGTGT AATATTCATA
ATGTTGTATA TTATTATTGC TGTTGTACTT TCTGCTTCCT CATCAATGTC CCACCTTTTA CTCCTACCAA TTTTTTCAAA
GGCTACTCTT TGGTTTCACT AATCTATCAT TGTATACA

>Vigan.06G161100.01
ATGACAACCT CCATGACGAC CGTCGCAGGA TTGGGTGGCG CAACACTGGG CTCCGCCGCA TCTCGTCTGA CCTCCGGGTT
CGTGAGAGCT CCTGTGAGTG CTAGGAATCC CTTGAGACAA GGTGTGGCAA TGGGAAATGG TGGGAGGGTG ACATGCTTTG
AGAGGAATTG GCTGCGGACC GATTACAGTG TGATCGGGTT CGGGTTGATC GGATGGCTAG CACCTTCCAG CATACCGGCT
ATCAACGGTA AAAGTCTGAC TGGCCTCTTC TTCGACAGCA TTGGAGCTGA GCTTGCTCAC TTCCCCACTC CACCTGCTCT
TACTTCCGAG TTCTGGTTAT GGCTGGTTAC ATGGCACCTT GGGTTGTTCC TGTGTCTCAC TTTTGGGCAA ATTGGTTTCA
AGGGAAGGAC TGAAGACTAC TTTTGA

>Vigan.06G161100.01
MTTSMTTVAG LGGATLGSAA SRLTSGFVRA PVSARNPLRQ GVAMGNGGRV TCFERNWLRT DYSVIGFGLI GWLAPSSIPA
INGKSLTGLF FDSIGAELAH FPTPPALTSE FWLWLVTWHL GLFLCLTFGQ IGFKGRTEDY F*