GBrowse Details

Vigan.06G149100.01

Basic Information:
Name: Vigan.06G149100.01
Multiple alignment
Variant Information
Position: Chr06:27807418..27809988 (+ strand)
Length: 2571
Functional Information:
Description: Similar to Isocitrate lyase. [I1LRR9, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Biological Process: carboxylic acid metabolic process (GO:0019752)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: isocitrate lyase activity (GO:0004451)
InterPro: Isocitrate lyase/phosphorylmutase (IPR000918)
Isocitrate lyase (IPR006254)
Pyruvate/Phosphoenolpyruvate kinase-like domain (IPR015813)
Isocitrate lyase/phosphorylmutase, conserved site (IPR018523)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.65,0.00,14.42,1.61,0.01,4.70,0.04, 0.05
Arabidopsis thaliana homolog: AT3G21720.1
Structure :
Position: Chr06:27807418..27807585 (+ strand)
Length: 168
Type: five_prime_UTR
Position: Chr06:27807586..27807615 (+ strand)
Length: 30
Type: CDS
Position: Chr06:27807838..27809440 (+ strand)
Length: 1603
Type: CDS
Position: Chr06:27809619..27809713 (+ strand)
Length: 95
Type: CDS
Position: Chr06:27809714..27809988 (+ strand)
Length: 275
Type: three_prime_UTR

>Vigan.06G149100.01 class=Sequence position=Chr06:27807418..27809988 (+ strand)
CTGGGTTTTT GTTTGTTTCT CTTTTCCGTA GTCTCATCTA AGTTACCATT CTTTCAAGGA CTTCGTCTAG ATAGTGACCC
TGTTGCTGTA TAAATTGAGG ACCTTTTTCA TGAGCTTCTC AAAGTTGTTC AAGTCATAAC ATTTACCGAA AAAGAAAGAG
TTCTGACCAT GGCTTCATCA CTCTTTATTC CTTCATCCGT AAGTTCAATA ATTCCCTGCA CTTTTGCTCT GCTTTGCTTT
CATTTGTGTG CAAAAACTAG TTTAATGCAA ACTAATTGAA CTTTTCTTCG ACCGGTAAAA CCAACCACAG CATAATTGTT
GTTATGGTAA ACTTATTTCG GATTGAAAAA ATTTATGTAA TACATGTTTT GCTATCTCAG CATACTTGAG TAAATGCTGA
TGCAAATTAT ACATGAACAG ATAGTGGAAG AAGAAGCCAG GTTTGAAGCC GAAGTGGCAG AGGTGCAAGC ATGGTGGAAC
TCTGATAGGT TCAAGCTAAC CAAAAGGCCA TACTCAGCTA GAGATGTGGT GTCCCTGAGA GGAAACCTCA GACAAAGCTA
TGGCTCGGGT GAGATGGCCA AAAAGCTATG GCGCATTCTG AAGAACCACC AAGCCAATGG CACAGCTTCA AGGACTTTTG
GTGCACTTGA CCCTGTTCAG GTCACTCAGA TGGCGAAGCA CTTGGACACC ATCTATGTCT CAGGATGGCA GTGTTCAGCC
ACTCACACCA CCACCAATGA GCCAGGCCCT GACCTTGCCG ATTACCCTTA TGACACTGTC CCCAACAAGG TTGAGCATCT
CTTCTTCGCT CAGCAATACC ATGACAGGAA ACAAAAAGAG GAGAGAATGA ACATGAGCAG GGAAGAGAGG GCAAGAACCC
CTTATGTTGA TTACTTGAGA CCCATCATAG CTGATGGTGA CACAGGTTTT GGTGGCACCA CAGCAACTGT GAAGCTTTGC
AAGCTCTTTG TGGAGAGAGG TGCTGCTGGC ATCCACATTG AGGACCAGTC TTCTGTGACA AAAAAGTGTG GCCACATGGC
AGGGAAAGTT CTGGTTGCCA TCAGTGAACA CATCAATAGG CTAGTGGCAG CAAGGCTTCA GTTTGATGTT ATGGGGGTGG
AAACTGTGCT GGTGGCCAGA ACAGATGCAG AAGCTGCTAA TTTGATTCAA TCTAACATTG ACACTAGGGA CCACCAATTT
ATCTTGGGTG TGACCAACCC AAACCTGAGG GGAAAGAGCT TGGCAGCTCT TATGGCAGAA GACATGGCTG CTGGGAAAAG
TGGAGCAGAA CTTCAGGCTT TGGAGGATGA GTGGCTGTCA AAGGCAGAGT TGAAGACTCT GTCAGAAGCA GTTGTGGAAG
CAATAGAGAG ACAGAACATT GGAGAGGAAG AGAAGAGAAG GAAGTTGAAT GAGTGGAAGC AGCATTCAAG TTATGAAAGG
TGTCTTTCCA ATGAAGAAGG TAGGGAGATA GCAGAGAGGT TAGGAGTGAG GAAGCTGTTT TGGGACTGGG ACTTGCCTAG
GACTAGAGAA GGGTTTTACA GGTTCAAAGG GTCTGTAACA GCATCAGTTG TGAGAGGTTG GGCTTTTGCT CCACATGCTG
ATGTGATATG GATGGAAACT GCAAGCCCCA ATGTGGGTGA GTGCATAGAG TTTTCTGAGG GGGTTAGATC AAAGCACCCT
GAGATGATGC TAGGCTACAA CCTCTCTCCA TCTTTCAATT GGGATGCTTC TGGCATGAGT GATGAGCAAA TGAGAGACTT
CATTCCCAAG ATTGCAAAGT TGGGGTATGT GTGGCAGTTC ATCACAGTTG GAGGTCTGCA TTCTAATGCA CTCATAACTT
CAACATTTTC AAGAGACTTT GCCAAGAGGG GCATGCTGGC TTATGTTGAG AGGATTCAGA GAGAGGAGAG GAACAATGGA
GTTGACACTC TTGCTCACCA GAAATGGGCT GGTGCTAACT ACTATGACAG ATACCTCAAG ACTGTCCAAG GAGGTGTGGC
TTCAACTGCT GCAATGGGAA AAGGCAAGTC ATTCACTCTC ACACACTAAG TTAGTGTCAC TAACAATACA CCATGCTTTC
ATTTCTTTAA GTTTTCATGA TTGCATCAAC AAAGTACTGT GTTTTTCACT GTCATTAGAA AGATTTTTAA TCAGTTAGCA
TACTAAGATG TTTCCCTTTT TTCCCTATGA TGTTTCTGTA GGAGTAACCG AAGAGCAGTT TAAAGAGTCA TGGACTAGGC
CAGGAGCTGT TGACATTGAT GGAGGCACTA TTGTGGTTGC TAAGGCCAGA ATGTGAAAGT GCTACTTCTG CTTAACTATA
CTCTGAGGGT CAATTTCGGG CAAATTCACC AATTTTTCTG TTGGATTGGA ACACATCTCC TTAACATTGA ATCAATATTC
TGCTATTTTT CTATGCATAA CTTGTTATAT TTCTTACTTG TTCAGGCTCT TTGGTGAGCA GAGAGAACAA GGAAAATTTG
TTTGTGTTTT GTGTTTTGTG TTTTGTTTTA CTCTTACTGT TAAACATGAT TTAGTTAGTG TGTATTTGGA CATGCATTTG
TGGATTAGGA G

>Vigan.06G149100.01
CTGGGTTTTT GTTTGTTTCT CTTTTCCGTA GTCTCATCTA AGTTACCATT CTTTCAAGGA CTTCGTCTAG ATAGTGACCC
TGTTGCTGTA TAAATTGAGG ACCTTTTTCA TGAGCTTCTC AAAGTTGTTC AAGTCATAAC ATTTACCGAA AAAGAAAGAG
TTCTGACCAT GGCTTCATCA CTCTTTATTC CTTCATCCAT AGTGGAAGAA GAAGCCAGGT TTGAAGCCGA AGTGGCAGAG
GTGCAAGCAT GGTGGAACTC TGATAGGTTC AAGCTAACCA AAAGGCCATA CTCAGCTAGA GATGTGGTGT CCCTGAGAGG
AAACCTCAGA CAAAGCTATG GCTCGGGTGA GATGGCCAAA AAGCTATGGC GCATTCTGAA GAACCACCAA GCCAATGGCA
CAGCTTCAAG GACTTTTGGT GCACTTGACC CTGTTCAGGT CACTCAGATG GCGAAGCACT TGGACACCAT CTATGTCTCA
GGATGGCAGT GTTCAGCCAC TCACACCACC ACCAATGAGC CAGGCCCTGA CCTTGCCGAT TACCCTTATG ACACTGTCCC
CAACAAGGTT GAGCATCTCT TCTTCGCTCA GCAATACCAT GACAGGAAAC AAAAAGAGGA GAGAATGAAC ATGAGCAGGG
AAGAGAGGGC AAGAACCCCT TATGTTGATT ACTTGAGACC CATCATAGCT GATGGTGACA CAGGTTTTGG TGGCACCACA
GCAACTGTGA AGCTTTGCAA GCTCTTTGTG GAGAGAGGTG CTGCTGGCAT CCACATTGAG GACCAGTCTT CTGTGACAAA
AAAGTGTGGC CACATGGCAG GGAAAGTTCT GGTTGCCATC AGTGAACACA TCAATAGGCT AGTGGCAGCA AGGCTTCAGT
TTGATGTTAT GGGGGTGGAA ACTGTGCTGG TGGCCAGAAC AGATGCAGAA GCTGCTAATT TGATTCAATC TAACATTGAC
ACTAGGGACC ACCAATTTAT CTTGGGTGTG ACCAACCCAA ACCTGAGGGG AAAGAGCTTG GCAGCTCTTA TGGCAGAAGA
CATGGCTGCT GGGAAAAGTG GAGCAGAACT TCAGGCTTTG GAGGATGAGT GGCTGTCAAA GGCAGAGTTG AAGACTCTGT
CAGAAGCAGT TGTGGAAGCA ATAGAGAGAC AGAACATTGG AGAGGAAGAG AAGAGAAGGA AGTTGAATGA GTGGAAGCAG
CATTCAAGTT ATGAAAGGTG TCTTTCCAAT GAAGAAGGTA GGGAGATAGC AGAGAGGTTA GGAGTGAGGA AGCTGTTTTG
GGACTGGGAC TTGCCTAGGA CTAGAGAAGG GTTTTACAGG TTCAAAGGGT CTGTAACAGC ATCAGTTGTG AGAGGTTGGG
CTTTTGCTCC ACATGCTGAT GTGATATGGA TGGAAACTGC AAGCCCCAAT GTGGGTGAGT GCATAGAGTT TTCTGAGGGG
GTTAGATCAA AGCACCCTGA GATGATGCTA GGCTACAACC TCTCTCCATC TTTCAATTGG GATGCTTCTG GCATGAGTGA
TGAGCAAATG AGAGACTTCA TTCCCAAGAT TGCAAAGTTG GGGTATGTGT GGCAGTTCAT CACAGTTGGA GGTCTGCATT
CTAATGCACT CATAACTTCA ACATTTTCAA GAGACTTTGC CAAGAGGGGC ATGCTGGCTT ATGTTGAGAG GATTCAGAGA
GAGGAGAGGA ACAATGGAGT TGACACTCTT GCTCACCAGA AATGGGCTGG TGCTAACTAC TATGACAGAT ACCTCAAGAC
TGTCCAAGGA GGTGTGGCTT CAACTGCTGC AATGGGAAAA GGAGTAACCG AAGAGCAGTT TAAAGAGTCA TGGACTAGGC
CAGGAGCTGT TGACATTGAT GGAGGCACTA TTGTGGTTGC TAAGGCCAGA ATGTGAAAGT GCTACTTCTG CTTAACTATA
CTCTGAGGGT CAATTTCGGG CAAATTCACC AATTTTTCTG TTGGATTGGA ACACATCTCC TTAACATTGA ATCAATATTC
TGCTATTTTT CTATGCATAA CTTGTTATAT TTCTTACTTG TTCAGGCTCT TTGGTGAGCA GAGAGAACAA GGAAAATTTG
TTTGTGTTTT GTGTTTTGTG TTTTGTTTTA CTCTTACTGT TAAACATGAT TTAGTTAGTG TGTATTTGGA CATGCATTTG
TGGATTAGGA G

>Vigan.06G149100.01
ATGGCTTCAT CACTCTTTAT TCCTTCATCC ATAGTGGAAG AAGAAGCCAG GTTTGAAGCC GAAGTGGCAG AGGTGCAAGC
ATGGTGGAAC TCTGATAGGT TCAAGCTAAC CAAAAGGCCA TACTCAGCTA GAGATGTGGT GTCCCTGAGA GGAAACCTCA
GACAAAGCTA TGGCTCGGGT GAGATGGCCA AAAAGCTATG GCGCATTCTG AAGAACCACC AAGCCAATGG CACAGCTTCA
AGGACTTTTG GTGCACTTGA CCCTGTTCAG GTCACTCAGA TGGCGAAGCA CTTGGACACC ATCTATGTCT CAGGATGGCA
GTGTTCAGCC ACTCACACCA CCACCAATGA GCCAGGCCCT GACCTTGCCG ATTACCCTTA TGACACTGTC CCCAACAAGG
TTGAGCATCT CTTCTTCGCT CAGCAATACC ATGACAGGAA ACAAAAAGAG GAGAGAATGA ACATGAGCAG GGAAGAGAGG
GCAAGAACCC CTTATGTTGA TTACTTGAGA CCCATCATAG CTGATGGTGA CACAGGTTTT GGTGGCACCA CAGCAACTGT
GAAGCTTTGC AAGCTCTTTG TGGAGAGAGG TGCTGCTGGC ATCCACATTG AGGACCAGTC TTCTGTGACA AAAAAGTGTG
GCCACATGGC AGGGAAAGTT CTGGTTGCCA TCAGTGAACA CATCAATAGG CTAGTGGCAG CAAGGCTTCA GTTTGATGTT
ATGGGGGTGG AAACTGTGCT GGTGGCCAGA ACAGATGCAG AAGCTGCTAA TTTGATTCAA TCTAACATTG ACACTAGGGA
CCACCAATTT ATCTTGGGTG TGACCAACCC AAACCTGAGG GGAAAGAGCT TGGCAGCTCT TATGGCAGAA GACATGGCTG
CTGGGAAAAG TGGAGCAGAA CTTCAGGCTT TGGAGGATGA GTGGCTGTCA AAGGCAGAGT TGAAGACTCT GTCAGAAGCA
GTTGTGGAAG CAATAGAGAG ACAGAACATT GGAGAGGAAG AGAAGAGAAG GAAGTTGAAT GAGTGGAAGC AGCATTCAAG
TTATGAAAGG TGTCTTTCCA ATGAAGAAGG TAGGGAGATA GCAGAGAGGT TAGGAGTGAG GAAGCTGTTT TGGGACTGGG
ACTTGCCTAG GACTAGAGAA GGGTTTTACA GGTTCAAAGG GTCTGTAACA GCATCAGTTG TGAGAGGTTG GGCTTTTGCT
CCACATGCTG ATGTGATATG GATGGAAACT GCAAGCCCCA ATGTGGGTGA GTGCATAGAG TTTTCTGAGG GGGTTAGATC
AAAGCACCCT GAGATGATGC TAGGCTACAA CCTCTCTCCA TCTTTCAATT GGGATGCTTC TGGCATGAGT GATGAGCAAA
TGAGAGACTT CATTCCCAAG ATTGCAAAGT TGGGGTATGT GTGGCAGTTC ATCACAGTTG GAGGTCTGCA TTCTAATGCA
CTCATAACTT CAACATTTTC AAGAGACTTT GCCAAGAGGG GCATGCTGGC TTATGTTGAG AGGATTCAGA GAGAGGAGAG
GAACAATGGA GTTGACACTC TTGCTCACCA GAAATGGGCT GGTGCTAACT ACTATGACAG ATACCTCAAG ACTGTCCAAG
GAGGTGTGGC TTCAACTGCT GCAATGGGAA AAGGAGTAAC CGAAGAGCAG TTTAAAGAGT CATGGACTAG GCCAGGAGCT
GTTGACATTG ATGGAGGCAC TATTGTGGTT GCTAAGGCCA GAATGTGA

>Vigan.06G149100.01
MASSLFIPSS IVEEEARFEA EVAEVQAWWN SDRFKLTKRP YSARDVVSLR GNLRQSYGSG EMAKKLWRIL KNHQANGTAS
RTFGALDPVQ VTQMAKHLDT IYVSGWQCSA THTTTNEPGP DLADYPYDTV PNKVEHLFFA QQYHDRKQKE ERMNMSREER
ARTPYVDYLR PIIADGDTGF GGTTATVKLC KLFVERGAAG IHIEDQSSVT KKCGHMAGKV LVAISEHINR LVAARLQFDV
MGVETVLVAR TDAEAANLIQ SNIDTRDHQF ILGVTNPNLR GKSLAALMAE DMAAGKSGAE LQALEDEWLS KAELKTLSEA
VVEAIERQNI GEEEKRRKLN EWKQHSSYER CLSNEEGREI AERLGVRKLF WDWDLPRTRE GFYRFKGSVT ASVVRGWAFA
PHADVIWMET ASPNVGECIE FSEGVRSKHP EMMLGYNLSP SFNWDASGMS DEQMRDFIPK IAKLGYVWQF ITVGGLHSNA
LITSTFSRDF AKRGMLAYVE RIQREERNNG VDTLAHQKWA GANYYDRYLK TVQGGVASTA AMGKGVTEEQ FKESWTRPGA
VDIDGGTIVV AKARM*