GBrowse Details

Vigan.06G149000.01

Basic Information:
Name: Vigan.06G149000.01
Multiple alignment
Variant Information
Position: Chr06:27796054..27797294 (+ strand)
Length: 1241
Functional Information:
Description: Similar to MYB transcription factor MYB73. [Q0PJH5, Glycine max]
GO: Molecular Function: DNA binding (GO:0003677)
Molecular Function: chromatin binding (GO:0003682)
InterPro: SANT/Myb domain (IPR001005)
Homeodomain-like (IPR009057)
Myb-like domain (IPR017877)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.80,1.60,0.23,15.24,4.01,12.89 ,0.52
Automatic updates:
Name: BT091291 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-7J17 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001364530 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500494 (LOC100500494), mRNA.
PubMed ID: 20075913 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:27796054..27796194 (+ strand)
Length: 141
Type: five_prime_UTR
Position: Chr06:27796195..27796357 (+ strand)
Length: 163
Type: CDS
Position: Chr06:27796793..27796877 (+ strand)
Length: 85
Type: CDS
Position: Chr06:27796964..27797051 (+ strand)
Length: 88
Type: CDS
Position: Chr06:27797052..27797294 (+ strand)
Length: 243
Type: three_prime_UTR

>Vigan.06G149000.01 class=Sequence position=Chr06:27796054..27797294 (+ strand)
CAAAATTCCA CGCCAACTAA CACGTCCAAC CCAACTACCA TGTGTTCAAC TACCACTTTC CACTCTCTCT TTTTCTTCAT
ACCCTCTTCT CTTTTTTTCT TCTTCTTCTT CATTTCTATG TACCCTTTCA CTCTCCTATG AATGTACACC CTCCTATATA
TTAATACCGC CGAATCGTTT CTTGTTCTAT ACACTCTTCT TTTTCAAAAC ATATTCAATA AAGGTTTTCA AAGCTCTTTT
CAACTTGCTG TTGCAATGGC TGACATTGAT CGCTCATCTG ATAATGCTTC TGCTGATTCT AAAGGTACCC TTTAAGAACG
GAGTCTTCTG ATACCTAGAC AAGTATATTT TGACATAATT ATACTATAAC ATGAACATAC GTACTCATAA CTAATCTCTC
TGCAGTTTTA TCTCAACGCT TGTTTTGGGT CATCACCCTT GTATGCCATT ACATTTCTCA AATTTTGAAT ACTGACAACT
GATCTCTCTG CAGAATCCTA TTCTCGTTGC ATTCTTTTTC TTTTTTGTGA CCACCTGAGA TTTCCAGCTT CTAGTCTTAA
TGTGTGATAA CTTTTGATAT ATTGAAAACA CACAGTTGTT CATTGCATTA CTTTTAGTAA CTAAAACTAT TTAATAACAA
GGTATATATG ATCTTACACT ATGTGATATG TATCTATCAG TGCATTAGAA AAGTTGTTGT TTTCTTTATA AATTTGAAGA
GTTGATTTGT GTTATGCAGA GAAATCCCTA CAAACTTCGA CTATGGAATT TTCTGAGGCT GAGGAAATCC TTATTGCCAT
GGTGTATAAT CTGGTTGGGG AGAGGTGAGT ATATGCATGC TTTCTTTTGT TGAAACACTT TTATTTTTTC ATTTTAGATG
AAGGTTATGA AACATTAAGT TTTTCCTTAG GTGGTCTTTG ATTGCTGGAA GAATTCCTGG AAGAACTGCA GAAGAGATAG
AGAAGTATTG GACTTCAAGA TATTCAACTA GCCAATGAAA TGGCAGAGAT AACGAAGCAA GAAAAATTTT GTGTGGGATA
TGAAATGGAA GTTGTTCCAA TTATATATTG GTTCTTGTGT TTGCATTTTG CTGTAACTAA AAGGGGTATG TCATTCTAAA
TGCCCTTATG TTTAATGTTG TTACTTTATC TTCCCATATA TCTTATAATG TTCTTATATG TTTAGGCAAT CTATGATTCA
GATATTTTCA TGCCAATATA GGTTTCCAAA AATACTTCTT A

>Vigan.06G149000.01
CAAAATTCCA CGCCAACTAA CACGTCCAAC CCAACTACCA TGTGTTCAAC TACCACTTTC CACTCTCTCT TTTTCTTCAT
ACCCTCTTCT CTTTTTTTCT TCTTCTTCTT CATTTCTATG TACCCTTTCA CTCTCCTATG AATGTACACC CTCCTATATA
TTAATACCGC CGAATCGTTT CTTGTTCTAT ACACTCTTCT TTTTCAAAAC ATATTCAATA AAGGTTTTCA AAGCTCTTTT
CAACTTGCTG TTGCAATGGC TGACATTGAT CGCTCATCTG ATAATGCTTC TGCTGATTCT AAAGAGAAAT CCCTACAAAC
TTCGACTATG GAATTTTCTG AGGCTGAGGA AATCCTTATT GCCATGGTGT ATAATCTGGT TGGGGAGAGG TGGTCTTTGA
TTGCTGGAAG AATTCCTGGA AGAACTGCAG AAGAGATAGA GAAGTATTGG ACTTCAAGAT ATTCAACTAG CCAATGAAAT
GGCAGAGATA ACGAAGCAAG AAAAATTTTG TGTGGGATAT GAAATGGAAG TTGTTCCAAT TATATATTGG TTCTTGTGTT
TGCATTTTGC TGTAACTAAA AGGGGTATGT CATTCTAAAT GCCCTTATGT TTAATGTTGT TACTTTATCT TCCCATATAT
CTTATAATGT TCTTATATGT TTAGGCAATC TATGATTCAG ATATTTTCAT GCCAATATAG GTTTCCAAAA ATACTTCTTA

>Vigan.06G149000.01
ATGTACACCC TCCTATATAT TAATACCGCC GAATCGTTTC TTGTTCTATA CACTCTTCTT TTTCAAAACA TATTCAATAA
AGGTTTTCAA AGCTCTTTTC AACTTGCTGT TGCAATGGCT GACATTGATC GCTCATCTGA TAATGCTTCT GCTGATTCTA
AAGAGAAATC CCTACAAACT TCGACTATGG AATTTTCTGA GGCTGAGGAA ATCCTTATTG CCATGGTGTA TAATCTGGTT
GGGGAGAGGT GGTCTTTGAT TGCTGGAAGA ATTCCTGGAA GAACTGCAGA AGAGATAGAG AAGTATTGGA CTTCAAGATA
TTCAACTAGC CAATGA

>Vigan.06G149000.01
MYTLLYINTA ESFLVLYTLL FQNIFNKGFQ SSFQLAVAMA DIDRSSDNAS ADSKEKSLQT STMEFSEAEE ILIAMVYNLV
GERWSLIAGR IPGRTAEEIE KYWTSRYSTS Q*