GBrowse Details

Vigan.06G147700.01

Basic Information:
Name: Vigan.06G147700.01
Multiple alignment
Variant Information
Position: Chr06:27618833..27622407 (+ strand)
Length: 3575
Functional Information:
Description: Similar to Xyloglucan endotransglucosylase/hydrolase. [V5NAT6, Phaseolus vulgaris]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: cellular glucan metabolic process (GO:0006073)
Cellular Component: cell wall (GO:0005618)
Cellular Component: apoplast (GO:0048046)
Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553)
Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762)
InterPro: Glycoside hydrolase, family 16 (IPR000757)
Beta-glucanase (IPR008264)
Concanavalin A-like lectin/glucanases superfamily (IPR008985)
Xyloglucan endo-transglycosylase, C-terminal (IPR010713)
Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
Xyloglucan endotransglucosylase/hydrolase (IPR016455)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.52,9.14,48.05,6.26,32.32,107.01,8. 88,26.89
Structure :
Position: Chr06:27618833..27619453 (+ strand)
Length: 621
Type: five_prime_UTR
Position: Chr06:27619454..27619607 (+ strand)
Length: 154
Type: CDS
Position: Chr06:27619788..27619888 (+ strand)
Length: 101
Type: CDS
Position: Chr06:27620426..27620619 (+ strand)
Length: 194
Type: CDS
Position: Chr06:27621015..27621438 (+ strand)
Length: 424
Type: CDS
Position: Chr06:27621439..27622407 (+ strand)
Length: 969
Type: three_prime_UTR

>Vigan.06G147700.01 class=Sequence position=Chr06:27618833..27622407 (+ strand)
AATTACAGCT GGATCGCCAC CATCACCTTC TTTATCCATC AAACACCACC ACATCATTTT ATTGCTCTGC ACCATTTTTT
CCATATCCAC CCATTCTGTA CCACGCTCTC TACTCTCTAG GCCATTTATG ATAAATTAAT ACACTCTCCC ATTTAACATC
TTCCCCTACT TCTTTCCTCA TTTCAAATCT TTCACACATC CTTAAATTTC TGTCTCTGCT AAACAATGCT ATTATTAAAG
TAAAATGTTG GTTACATGGT GGTGCTGTTT TTGAATATGA TTAAAGACAG TGTTGTTGTG ACTGTGTAGT GGGTGCCCAG
TGGAGCTTGA AGAGTGTACA GCTTTTGCCA GCTGTTATTT GCAACAGTAA CGGCACCATT TGCCACGCAC CACATCATCT
TTTATTTCTT TTTCTCTTGG TATTTGAAAT CCACCCTGGC AAGCTGATGT GGCACAGTCC TCCATGATGT GTACGTTGGG
AATGCAACAC CAGCTTATCT CGCAAGCCAC TTTCAAACAC ACTTTGGCTA TAAAACACTT CTTACTTCTC ACTCTCTTCT
CACTCACTGC TCTCAGAACC TTCCCTCTGC TCTCCCCATA CTCTTCTGTT CCGCTTTAAG GATGTCTCGC TCCTTAGGAT
TGTTTGTGGG TCTTATGATG GTTGTGGGGG TGGCTTCCAC CTCCAACTTC GATCAACTTT TCCAACCAAG TTGGGCTTTT
GATCACTTCG TTCATGAAGG AAATCTCCTC AAACTCAAAC TTGACAATTA TTCTGGTAAA GCCACAGGTT TTTTTTTTTT
TCTGTTTCTT TGAGCATCCA AAGAGATTGT CTTTGTTAGC CTCTTAGTCA TGATCTTTGA CTAGTTCATC CCACTAATGA
GCAATCTAAT ATAGACACTA CGCTTGAGAA AAATGGTTTG TTTTGTGTCG TTAATATTGA GTGGGACATT TTCAGGGGCT
GGTTTTGGAT CCAAAAGCAA GTATATGTTT GGGAAAGTGA CCATCCAGCT TAAGCTTGTG GAAGGTGATT CTGCGGGGAC
TGTCACTGCT TTCTATGTAA GTGAACAAAA TTATTCTTAG TCACCAAGTT ATTCCTCGGT TTTTTTTGTT TATTGTTAGT
ATTAATTAAC TTGTTATAAC AAATATCAAT TAATCATCAT CATCAAGAGT GATACTACTT TGGCCTCACT TGACTATGTG
GCTTTAACTC TTCATCATTA GTATGGAGAT GGTCTACCTC TGGGACCTCA TTTAATGCAT TCAATTAAAA TCAATGTAAG
CAACGTTTTT CTGCAAAAAA AAAAATGGAC TTGGAATCCA TGGAATCCAT TTAACACACC CATTAGTGGC AGCTACCTAC
TACCCTTTAC CCTCGTGATT TACTTTACAT CCAATTAATA TTCGCATTCA TTACTTTTGT TTCCGTCTTT GCTATCTATG
AACCAATGCA AGGTTAAATT CTGCTGGGGA ACTTTACACG ATCAACCCAA CAGTTGTATT ATTCTGCGTT TGAATTGACT
TTTCACTTTT TTTTGGTTTC AATTATTGAG GAATCTGAAT GAGTCTGACA CAGTGATAAT TGATTTGACG TAGATGTCCT
CGGAGGGGCC AAACCACAAT GAGTTTGATT TTGAGTTTCT GGGCAACACC ACAGGGGAAC CATACTCAGT CCAAACAAAC
GTGTATGTGA ACGGAGTGGG CAACAGAGAA CAAAGGCTTA ACCTTTGGTT CGACCCTACC AAGGATTTCC ATTCATACTC
TATCTTCTGG AATCAACGAC AAGTTGTGTA AGTACCCATT CCTCTTAATT ACTGCACATT GCATTAGATT TAAAACCTAA
TGTAACTTCA CTGTTATATC TAAAAAAATG ACTATGGAAA GGGAAAAAGC TGTAAGATAG CGTGCTTTTT CCCCTTCGGT
GGTTGAGCCA TCACAGACTT GTTTTCACTG TGTACCCAAT GGGGTTACAC GAAAAGAAAT CCATGAAAAA AGGTAAGGGA
ATCTAGGACA ATTCATGGGT CTATACAAGA ATATGTACGT ACATATGGTG TACATATGTT CCCATGCGCT TCAGTATTTG
CAGGTGGTAC ATATTAATAT AGACCGAACC AAAATTTACC ATGTTGATTT GGTGATCTAA AAGTGTTAAG TTGTTTGGTT
AAAATGATTT TTACATGATC AGGTTTTTGG TGGATGAAAC GCCGATAAGA GTGCACACAA ACATGGAGCA CAAGGGTATT
CCTTATCCGA AAGATCAGCC CATGGGTGTG TACAGTTCTA TATGGAATGC TGACAATTGG GCCACCCAGG GTGGTCGTGT
GAAGACGGAT TGGAGCCACG CACCCTTCTT TGTCACCTTC AAGAACTTTG AGATCAATGC TTGTGAATGC CCTGTGGCAG
TGGCTGCAAT GGATAACTCT AAACGCTGTA GCAGCAGTGA GGGTAAGAAA TATTGGTGGG ATGAGCCAAA TTTGGCTGAA
CTCAACGTGC ACCAGAGCCA TCAGCTGAAG TGGGTTAGAG CCAGACACAT CTTCTATGAC TATTGCTCTG ACACTGCTAG
GTTCCCAGTC ACGCCAGCTG AGTGTGTTCA TCACCGTCAC AACTGAGATA ATAGATAGAA AGATAGATAT GCTTTATTTT
GCTATGATTA AGTGGAGTCA TGATGAAAAT AGGATTGTGG GGGATAGAAG ACAAAATGGG GTGGAGTAAA AAGTTGTGGA
ACATGCCCTT AATGTTTCTG GTTGTAATAT ATTGCCACAG CATAATGTGA ATTATCAGTC TCTTTTCATG TACAATTCAA
TTCGACTTGT TTCAGTGTTC TAATGGATAA ATATCGAGAC AGTCCCCTAA ACTAATTTCC AACAGCATGA TTTTAATCAA
GTAGTGTAGT TTTTCTTTTA AGCTCTATCA ACAAGTGGGG GGGCAGGTCC CTAAAATTTG TGGGTGGATA AAAAATCTTT
AGGGTAGTCC CAAAAGTAGG TGATGTGGAT TTGAATAATG ATTTTTACAT GTGGTGAGAC AGGGAGATGT TGATTGGATG
CATTTTGGGC AATTCCTTCT ACATTTGATC TGTTGATGGA TGAAGTGGAT TGCTTACTTC AATGAATTGA CTTGGCTATG
GGACCACAAG CTCACGGGTT GATTGGTTTG ATGGAGGAGA AGTAGGGAAT TGTGACTTTT AGACACATGA AGATGAACTT
TTGTTTTGAG GTTTGGGAAC TTTACTTTAT GGGGAGAGGT AATAATGCCC TATTTGCAAC CATTTTTTCT ATGAGAAAAA
AGTTGTCAAC TTTGTGCTAC CATTTTTCAT GAACAAGAGA AGAGGTACAA TTTACAAAGA AAGGAGTGAG TGTTTGTGCA
CATATGTGCG TAAAGCAAGT TGAAATTCCT AAACTGGTTG TTGTATTGTT TCGATGGATA GACAAAGCTT GAAAGAATCA
GATTCAATGA TCGACCAAAG AGTGGCAAGA TTAGATGTAT AAACAAATAG AAAAGGCAAG GGGATTGGAA TATTAAACAG
TGCAATTTAG AAAAGGGTTT CACCAATATG GCAATGATTT TCAACACCAT CTTTT

>Vigan.06G147700.01
AATTACAGCT GGATCGCCAC CATCACCTTC TTTATCCATC AAACACCACC ACATCATTTT ATTGCTCTGC ACCATTTTTT
CCATATCCAC CCATTCTGTA CCACGCTCTC TACTCTCTAG GCCATTTATG ATAAATTAAT ACACTCTCCC ATTTAACATC
TTCCCCTACT TCTTTCCTCA TTTCAAATCT TTCACACATC CTTAAATTTC TGTCTCTGCT AAACAATGCT ATTATTAAAG
TAAAATGTTG GTTACATGGT GGTGCTGTTT TTGAATATGA TTAAAGACAG TGTTGTTGTG ACTGTGTAGT GGGTGCCCAG
TGGAGCTTGA AGAGTGTACA GCTTTTGCCA GCTGTTATTT GCAACAGTAA CGGCACCATT TGCCACGCAC CACATCATCT
TTTATTTCTT TTTCTCTTGG TATTTGAAAT CCACCCTGGC AAGCTGATGT GGCACAGTCC TCCATGATGT GTACGTTGGG
AATGCAACAC CAGCTTATCT CGCAAGCCAC TTTCAAACAC ACTTTGGCTA TAAAACACTT CTTACTTCTC ACTCTCTTCT
CACTCACTGC TCTCAGAACC TTCCCTCTGC TCTCCCCATA CTCTTCTGTT CCGCTTTAAG GATGTCTCGC TCCTTAGGAT
TGTTTGTGGG TCTTATGATG GTTGTGGGGG TGGCTTCCAC CTCCAACTTC GATCAACTTT TCCAACCAAG TTGGGCTTTT
GATCACTTCG TTCATGAAGG AAATCTCCTC AAACTCAAAC TTGACAATTA TTCTGGGGCT GGTTTTGGAT CCAAAAGCAA
GTATATGTTT GGGAAAGTGA CCATCCAGCT TAAGCTTGTG GAAGGTGATT CTGCGGGGAC TGTCACTGCT TTCTATATGT
CCTCGGAGGG GCCAAACCAC AATGAGTTTG ATTTTGAGTT TCTGGGCAAC ACCACAGGGG AACCATACTC AGTCCAAACA
AACGTGTATG TGAACGGAGT GGGCAACAGA GAACAAAGGC TTAACCTTTG GTTCGACCCT ACCAAGGATT TCCATTCATA
CTCTATCTTC TGGAATCAAC GACAAGTTGT GTTTTTGGTG GATGAAACGC CGATAAGAGT GCACACAAAC ATGGAGCACA
AGGGTATTCC TTATCCGAAA GATCAGCCCA TGGGTGTGTA CAGTTCTATA TGGAATGCTG ACAATTGGGC CACCCAGGGT
GGTCGTGTGA AGACGGATTG GAGCCACGCA CCCTTCTTTG TCACCTTCAA GAACTTTGAG ATCAATGCTT GTGAATGCCC
TGTGGCAGTG GCTGCAATGG ATAACTCTAA ACGCTGTAGC AGCAGTGAGG GTAAGAAATA TTGGTGGGAT GAGCCAAATT
TGGCTGAACT CAACGTGCAC CAGAGCCATC AGCTGAAGTG GGTTAGAGCC AGACACATCT TCTATGACTA TTGCTCTGAC
ACTGCTAGGT TCCCAGTCAC GCCAGCTGAG TGTGTTCATC ACCGTCACAA CTGAGATAAT AGATAGAAAG ATAGATATGC
TTTATTTTGC TATGATTAAG TGGAGTCATG ATGAAAATAG GATTGTGGGG GATAGAAGAC AAAATGGGGT GGAGTAAAAA
GTTGTGGAAC ATGCCCTTAA TGTTTCTGGT TGTAATATAT TGCCACAGCA TAATGTGAAT TATCAGTCTC TTTTCATGTA
CAATTCAATT CGACTTGTTT CAGTGTTCTA ATGGATAAAT ATCGAGACAG TCCCCTAAAC TAATTTCCAA CAGCATGATT
TTAATCAAGT AGTGTAGTTT TTCTTTTAAG CTCTATCAAC AAGTGGGGGG GCAGGTCCCT AAAATTTGTG GGTGGATAAA
AAATCTTTAG GGTAGTCCCA AAAGTAGGTG ATGTGGATTT GAATAATGAT TTTTACATGT GGTGAGACAG GGAGATGTTG
ATTGGATGCA TTTTGGGCAA TTCCTTCTAC ATTTGATCTG TTGATGGATG AAGTGGATTG CTTACTTCAA TGAATTGACT
TGGCTATGGG ACCACAAGCT CACGGGTTGA TTGGTTTGAT GGAGGAGAAG TAGGGAATTG TGACTTTTAG ACACATGAAG
ATGAACTTTT GTTTTGAGGT TTGGGAACTT TACTTTATGG GGAGAGGTAA TAATGCCCTA TTTGCAACCA TTTTTTCTAT
GAGAAAAAAG TTGTCAACTT TGTGCTACCA TTTTTCATGA ACAAGAGAAG AGGTACAATT TACAAAGAAA GGAGTGAGTG
TTTGTGCACA TATGTGCGTA AAGCAAGTTG AAATTCCTAA ACTGGTTGTT GTATTGTTTC GATGGATAGA CAAAGCTTGA
AAGAATCAGA TTCAATGATC GACCAAAGAG TGGCAAGATT AGATGTATAA ACAAATAGAA AAGGCAAGGG GATTGGAATA
TTAAACAGTG CAATTTAGAA AAGGGTTTCA CCAATATGGC AATGATTTTC AACACCATCT TTT

>Vigan.06G147700.01
ATGTCTCGCT CCTTAGGATT GTTTGTGGGT CTTATGATGG TTGTGGGGGT GGCTTCCACC TCCAACTTCG ATCAACTTTT
CCAACCAAGT TGGGCTTTTG ATCACTTCGT TCATGAAGGA AATCTCCTCA AACTCAAACT TGACAATTAT TCTGGGGCTG
GTTTTGGATC CAAAAGCAAG TATATGTTTG GGAAAGTGAC CATCCAGCTT AAGCTTGTGG AAGGTGATTC TGCGGGGACT
GTCACTGCTT TCTATATGTC CTCGGAGGGG CCAAACCACA ATGAGTTTGA TTTTGAGTTT CTGGGCAACA CCACAGGGGA
ACCATACTCA GTCCAAACAA ACGTGTATGT GAACGGAGTG GGCAACAGAG AACAAAGGCT TAACCTTTGG TTCGACCCTA
CCAAGGATTT CCATTCATAC TCTATCTTCT GGAATCAACG ACAAGTTGTG TTTTTGGTGG ATGAAACGCC GATAAGAGTG
CACACAAACA TGGAGCACAA GGGTATTCCT TATCCGAAAG ATCAGCCCAT GGGTGTGTAC AGTTCTATAT GGAATGCTGA
CAATTGGGCC ACCCAGGGTG GTCGTGTGAA GACGGATTGG AGCCACGCAC CCTTCTTTGT CACCTTCAAG AACTTTGAGA
TCAATGCTTG TGAATGCCCT GTGGCAGTGG CTGCAATGGA TAACTCTAAA CGCTGTAGCA GCAGTGAGGG TAAGAAATAT
TGGTGGGATG AGCCAAATTT GGCTGAACTC AACGTGCACC AGAGCCATCA GCTGAAGTGG GTTAGAGCCA GACACATCTT
CTATGACTAT TGCTCTGACA CTGCTAGGTT CCCAGTCACG CCAGCTGAGT GTGTTCATCA CCGTCACAAC TGA

>Vigan.06G147700.01
MSRSLGLFVG LMMVVGVAST SNFDQLFQPS WAFDHFVHEG NLLKLKLDNY SGAGFGSKSK YMFGKVTIQL KLVEGDSAGT
VTAFYMSSEG PNHNEFDFEF LGNTTGEPYS VQTNVYVNGV GNREQRLNLW FDPTKDFHSY SIFWNQRQVV FLVDETPIRV
HTNMEHKGIP YPKDQPMGVY SSIWNADNWA TQGGRVKTDW SHAPFFVTFK NFEINACECP VAVAAMDNSK RCSSSEGKKY
WWDEPNLAEL NVHQSHQLKW VRARHIFYDY CSDTARFPVT PAECVHHRHN *