GBrowse Details

Vigan.06G133900.01

Basic Information:
Name: Vigan.06G133900.01
Multiple alignment
Variant Information
Position: Chr06:25722899..25726936 (+ strand)
Length: 4038
Functional Information:
Description: Similar to Uncharacterized protein. [I1LS12, Glycine max]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: Tetraspanin (IPR000301)
Tetraspanin/Peripherin (IPR018499)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:105.66,35.71,23.65,28.08,28.68,42.44,29.64,25.90
Arabidopsis thaliana homolog: AT2G20740.1
Automatic updates:
Name: NM_001249433 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527459 (LOC100527459), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:25722899..25723089 (+ strand)
Length: 191
Type: five_prime_UTR
Position: Chr06:25723090..25723262 (+ strand)
Length: 173
Type: CDS
Position: Chr06:25724105..25724204 (+ strand)
Length: 100
Type: CDS
Position: Chr06:25724899..25724979 (+ strand)
Length: 81
Type: CDS
Position: Chr06:25725105..25725209 (+ strand)
Length: 105
Type: CDS
Position: Chr06:25726010..25726198 (+ strand)
Length: 189
Type: CDS
Position: Chr06:25726199..25726936 (+ strand)
Length: 738
Type: three_prime_UTR

>Vigan.06G133900.01 class=Sequence position=Chr06:25722899..25726936 (+ strand)
ATAAAGTAAT CTAAAGGAAA AACTTATAAC CTCCTTGCTC TCTTCGAATC CGTTAAGCGT ACGAGCCCTA GATTTCGATC
TAGGGTTTCT TTGCGCTCTA GTTCAATTTT CAATTCTGCT TTCATTGGAT TCTGGGGGTT AAGTTGTTCT TACATTATTC
CATTTCCCAC GAATTAGAAA TCACAAAGAA AATGGTGAGG GTGTTGAGAA GCTGCATTCA ATCCATATTG AAGCTGGTGA
ACTCGGTGAT TGGGATGGCC GGGTTAGCCA TGATTCTGTA CTCCGCTTGG ATGATTAGGG TTTGGCAGAG GGAGATGGGT
GACCTCCCCT TTGGTCACGA TTCTGATGAT TATCCACCTC CATGGTAAAA TATTCATTTT TTTCCTCCAT TTTTTTTTTC
TATTTATCCT TGTATTAATG AATGAGAAAA TTTGGATTTC GATTGACCAG TGAAGATGGA TTTCAATATT TTTAATAATG
AAATAAAATA TTAAAAATTA TGATTTGATT TTATGATATT AATGTGTTTT TATTGCTTTT GTACTAAAAT GTTGAATGAA
AGATAACGTT CTAGGAAACC AAAGGAGTTA ATTGTGGAAG AGAGAAATGT TGATTGGGGG AGTCGTTTTT GTCATCATAA
AGCTGTTGAA TTTTGTGCTC TGTCCACTTG CAAGCTCTTA ATGGAATTAA GAGAACCGGG AAATCAATTA TGTATTACCC
GGACTTTTGG AGCAGGGTTG GGGTTCTGGC TTAGGATATA AATATATTCA AGGTGTTAAA TTGTGGTCAC AATAGCAGTT
TTGTTATGAT TCTTGATATT GAAGAAAAGT TATTGTAGTT GTAGAAACTT CAAGAACCTT AACGTTAGAC ACAAACCAGT
TTTTAAAACC TTAGATTTGT TCATTGTGAG GAGCACTGGA TGGTACAAAA AATTTATGTG ATACAAATCT TTTGAACGTG
AATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATATATATT TTGTGGGAAT
TGCAGGTGGG GGAGGGGATG TTGTCAAACT GATTGCTTAT TTTTGTGATC TTTATGGATA GATATACTCA GTATTTCCTG
CTAGTTTAAT TCCGCTTTAC ATTATTAAAT TTTCTGGTCT GTATGGATAG ATTCTGAAGA CATGTTTTTT TTTCTTTTGA
AATCAGGTTC ATTTACACGT TTCTTGGCCT TGGAGCGGTG TTCTGTGTAG TAACGTGTTT AGGTCATGTA GCTGCAGAAA
CTGCTAATGG CTGTTGCCTG TATTTGGTAT CCTTTTCTTT TAGTCTACCA TTATTTTAGT AACAGATACG GCTCTGATGC
TACACATGGA TATGGCATTT CTTAAAATTT AGGTTGCAAG CATGGGAGTA CAAATAACAT TTATGTGAAA AATTGTATAT
ATTGTAGCAT ATCATAAAAT AAACTAAAAT ATAAATGCAT CATAAAATTA CTCTTACGGT ATTTTTGAAG CAATTTCTCT
ACATCTAAAT TATAATTTTT TTAATTTTAA GTGCTAAATG CATAGTATGG AAAAATGTTT TAATTTAATA AAATACGTAA
GTTATATTTA AGGTAGCTAG CTAACAATTT AAATAATTTT TACTGCTGAA AGTTTTAATT TTTTTCACTG AATTTGAGAC
ATACAATTTT AATTGCTGAT GTTAGTTTTT TTATTTTTAT TTTTATTTTA TTTTTATTTT ATTTATTTAT TGTTATAATA
CAATATTTAA GATAAGTATA ATCATTTAAT AATTTACGTA AGGGAATGTT CACCGTTCAA TGTAGTCATT AATTCCCTCT
ACCGAATTAT TATCACTTAG TTGCACTTTT GGTGACTGTT AAACAACCAC TATTATGTTT CAGTGCTGAA ACTTTTAGTT
TTATGCAGTT AGTTGTGTTC AATAGCAAAG CCATCTCATT AAGTGGTCAT TAAGGCAATG TTAACCTTGA CTGCTTACAG
TATATGGTGT TTGTGGTTTT GCTTCTCATG CTGGAGGCTG CATTAACTGT TGATGTATTT GTGAATCAGG ACTGGGAGAA
GGTATTGTTG TCTATAAAAA ATAATTTCAA TAATGTTTTT GTTAATTCAA TGCTTTTATA TTTTAAAGTC TTCTCTTCCT
GTGACATATT GAATCTGATC CATCTAAACG TGAAAATTGG AGTCAGGACT TCCCAAAGGA CCCCTCTGGG AGTTTTGATC
AGTTCAAGAA TTTCATCAGA TCAAATTACG AGATGTGCAA ATGGGTAGGC CTGTTTCTTG TTTCTGTACA GGTAAATCTC
TCTCTTCTCT GTCTGTGGCT GTAATAATTT ATGATACAAT TATTGTTGAA GCATATTATT TACCTATTGC CAAAGTTTCC
TACTGAATTC CCACTTCCAA GATCATTGCA AGTTTTAAAC ACAAGATTTT TAATTAAAGG GAACTTTGTA TTCAGGTTTT
CAAGATTGTC TAAGTAGCTT CTTTCTCTTA TAAAGCATAT CGAGAAAACT GTCTCCAATG ATTACAGTAT ACTGAATTCT
TTTAAAAAAT ATTGCTTTCC CAAAGCAAGT TTAGGGAACC ATAGTGTGTA AGACTAACAT GATAAGCACT ACACAGCGGA
AACTTTCTTC TTTTGAACAC ATATCTCTTT CATACGGTCA ATAACAGCTT TAATCTGTAA TGAAAAGATG GAAAATGAAA
ATATCAGCTT TCATCATTTC TTTCTAACTG TATCCTGTTT ATTGTCCCTT TTATATTTAT CTCTTTGGTT CCTCTACTGA
TAATTTTAAT GCATATTTTA TTATTAAGGG ATTCTTATAG GTAGTACTCC TGTTGTTGAT GAGATCTAAA CTGTCATTCT
AGGTATATAA TTAACATGTA AAACAACTGC CAACTGGTAC AATGTGTATA CTCTCTCTAA TTCATTTGTT CTGTCAGTAA
ACTACGTAAT CAGCTAGTGC ATATTTCTTG TTACACTTTG TTACATATTT CTACTTGCTT TTGGTTCCAA AATCTGAAGA
TGGAGTTACA TTTGGAATTT GGTTAATGAA TGATGCATTG ACGGATGGCT GCCTGTGCTG TTAACAAGCA GGGACTCTCT
TTACTATTGG CAATGATACT CAAAGCACTA GGACCACATC AATATTATGA TAGTGATGAT GAATATACTC CTGACAGGGT
GCCACTCTTG AAGAATGCTC CACCTCAATA TGTTGTTGTT GATCCAGGAT ATGCACATGG AAATGAAACA TGGAATAGGG
TAAGTGGCAA GGTAAACTAG ATTGGAATTC TTTTCTTGAT CTTAACTTTC TTATTTGAGT CGTCACGGAT TTTCTTTATG
ATTTAGTTTC ACTACTACTC TGTTTAATTA CGTATTATCA TGCCCCAGTC TCATTGTTAG GTGGTTTGAA TAGGCAAGTT
GGCTTATAGA CTGTACGTCG GTGTATACTG AAAATTTGAA AGTGATGATG TATTAGATTG AATCTTTAGT ACTTATGATA
GCGATCTCAA TTTTCTTCAT TCATTTTTCG GAACTTTTTT TTGGAAATTA GAGCATTAAC CTCTACTGAT GCTTTATTGT
TGCATGATAT TGATTTAATT TTAATGTTAA CACTATTCTG TCAGTGGTCA AATACATTAT GAAGTCGCTT TATGATTTCA
TTTAGTCACT ATTTATTTGT TTCCTTGGTG AGACAAGTCC TGGTTATTGT TTTACTGTAT AGTGGTCAGC ATGTTAAATC
TTAGCTCTAG CTTTGAACTT CTCTCCATTT AAATGAAAGT TTCCTTCTTT AATCAGTCAA ATAGGTAAGG CCATAGCCTT
CAATTTAACC TTGACGTCTG GATCCATGGA AAGTGAGGCA AGCAGTCCTT TTTTATGCCA ATTGGTTTAG AAGATGACCT
ACACGCTGGA GACGGATTAA CTATTGAATC AATGGCTATG GGAGAAACAA GTGCTTATCG TGATCCTGGG GACAAATAAA
CCATTTTCAC ACAGTTGTGA GTAAACGTGT GTAATCAT

>Vigan.06G133900.01
ATAAAGTAAT CTAAAGGAAA AACTTATAAC CTCCTTGCTC TCTTCGAATC CGTTAAGCGT ACGAGCCCTA GATTTCGATC
TAGGGTTTCT TTGCGCTCTA GTTCAATTTT CAATTCTGCT TTCATTGGAT TCTGGGGGTT AAGTTGTTCT TACATTATTC
CATTTCCCAC GAATTAGAAA TCACAAAGAA AATGGTGAGG GTGTTGAGAA GCTGCATTCA ATCCATATTG AAGCTGGTGA
ACTCGGTGAT TGGGATGGCC GGGTTAGCCA TGATTCTGTA CTCCGCTTGG ATGATTAGGG TTTGGCAGAG GGAGATGGGT
GACCTCCCCT TTGGTCACGA TTCTGATGAT TATCCACCTC CATGGTTCAT TTACACGTTT CTTGGCCTTG GAGCGGTGTT
CTGTGTAGTA ACGTGTTTAG GTCATGTAGC TGCAGAAACT GCTAATGGCT GTTGCCTGTA TTTGTATATG GTGTTTGTGG
TTTTGCTTCT CATGCTGGAG GCTGCATTAA CTGTTGATGT ATTTGTGAAT CAGGACTGGG AGAAGGACTT CCCAAAGGAC
CCCTCTGGGA GTTTTGATCA GTTCAAGAAT TTCATCAGAT CAAATTACGA GATGTGCAAA TGGGTAGGCC TGTTTCTTGT
TTCTGTACAG GGACTCTCTT TACTATTGGC AATGATACTC AAAGCACTAG GACCACATCA ATATTATGAT AGTGATGATG
AATATACTCC TGACAGGGTG CCACTCTTGA AGAATGCTCC ACCTCAATAT GTTGTTGTTG ATCCAGGATA TGCACATGGA
AATGAAACAT GGAATAGGGT AAGTGGCAAG GTAAACTAGA TTGGAATTCT TTTCTTGATC TTAACTTTCT TATTTGAGTC
GTCACGGATT TTCTTTATGA TTTAGTTTCA CTACTACTCT GTTTAATTAC GTATTATCAT GCCCCAGTCT CATTGTTAGG
TGGTTTGAAT AGGCAAGTTG GCTTATAGAC TGTACGTCGG TGTATACTGA AAATTTGAAA GTGATGATGT ATTAGATTGA
ATCTTTAGTA CTTATGATAG CGATCTCAAT TTTCTTCATT CATTTTTCGG AACTTTTTTT TGGAAATTAG AGCATTAACC
TCTACTGATG CTTTATTGTT GCATGATATT GATTTAATTT TAATGTTAAC ACTATTCTGT CAGTGGTCAA ATACATTATG
AAGTCGCTTT ATGATTTCAT TTAGTCACTA TTTATTTGTT TCCTTGGTGA GACAAGTCCT GGTTATTGTT TTACTGTATA
GTGGTCAGCA TGTTAAATCT TAGCTCTAGC TTTGAACTTC TCTCCATTTA AATGAAAGTT TCCTTCTTTA ATCAGTCAAA
TAGGTAAGGC CATAGCCTTC AATTTAACCT TGACGTCTGG ATCCATGGAA AGTGAGGCAA GCAGTCCTTT TTTATGCCAA
TTGGTTTAGA AGATGACCTA CACGCTGGAG ACGGATTAAC TATTGAATCA ATGGCTATGG GAGAAACAAG TGCTTATCGT
GATCCTGGGG ACAAATAAAC CATTTTCACA CAGTTGTGAG TAAACGTGTG TAATCAT

>Vigan.06G133900.01
ATGGTGAGGG TGTTGAGAAG CTGCATTCAA TCCATATTGA AGCTGGTGAA CTCGGTGATT GGGATGGCCG GGTTAGCCAT
GATTCTGTAC TCCGCTTGGA TGATTAGGGT TTGGCAGAGG GAGATGGGTG ACCTCCCCTT TGGTCACGAT TCTGATGATT
ATCCACCTCC ATGGTTCATT TACACGTTTC TTGGCCTTGG AGCGGTGTTC TGTGTAGTAA CGTGTTTAGG TCATGTAGCT
GCAGAAACTG CTAATGGCTG TTGCCTGTAT TTGTATATGG TGTTTGTGGT TTTGCTTCTC ATGCTGGAGG CTGCATTAAC
TGTTGATGTA TTTGTGAATC AGGACTGGGA GAAGGACTTC CCAAAGGACC CCTCTGGGAG TTTTGATCAG TTCAAGAATT
TCATCAGATC AAATTACGAG ATGTGCAAAT GGGTAGGCCT GTTTCTTGTT TCTGTACAGG GACTCTCTTT ACTATTGGCA
ATGATACTCA AAGCACTAGG ACCACATCAA TATTATGATA GTGATGATGA ATATACTCCT GACAGGGTGC CACTCTTGAA
GAATGCTCCA CCTCAATATG TTGTTGTTGA TCCAGGATAT GCACATGGAA ATGAAACATG GAATAGGGTA AGTGGCAAGG
TAAACTAG

>Vigan.06G133900.01
MVRVLRSCIQ SILKLVNSVI GMAGLAMILY SAWMIRVWQR EMGDLPFGHD SDDYPPPWFI YTFLGLGAVF CVVTCLGHVA
AETANGCCLY LYMVFVVLLL MLEAALTVDV FVNQDWEKDF PKDPSGSFDQ FKNFIRSNYE MCKWVGLFLV SVQGLSLLLA
MILKALGPHQ YYDSDDEYTP DRVPLLKNAP PQYVVVDPGY AHGNETWNRV SGKVN*