GBrowse Details

Vigan.06G115800.01

Basic Information:
Name: Vigan.06G115800.01
Multiple alignment
Variant Information
Position: Chr06:22557423..22561481 (- strand)
Length: 4059
Functional Information:
Description: Similar to ATP synthase protein I. [G7JCK8, Medicago truncatula]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:21.74,18.98,39.00,159.12,18.65,44.42,19.29,32.90
Arabidopsis thaliana homolog: AT2G31040.1
Automatic updates:
Name: KM399999 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ATP synthase protein I-related protein mRNA, partial cds.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Name: KM400017 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris ATP synthase protein I-related protein mRNA, partial cds.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:22557423..22557600 (- strand)
Length: 178
Type: three_prime_UTR
Position: Chr06:22557601..22557733 (- strand)
Length: 133
Type: CDS
Position: Chr06:22558382..22558450 (- strand)
Length: 69
Type: CDS
Position: Chr06:22558718..22558813 (- strand)
Length: 96
Type: CDS
Position: Chr06:22559336..22559427 (- strand)
Length: 92
Type: CDS
Position: Chr06:22559565..22559645 (- strand)
Length: 81
Type: CDS
Position: Chr06:22559894..22559989 (- strand)
Length: 96
Type: CDS
Position: Chr06:22560166..22560244 (- strand)
Length: 79
Type: CDS
Position: Chr06:22560350..22560399 (- strand)
Length: 50
Type: CDS
Position: Chr06:22561046..22561357 (- strand)
Length: 312
Type: CDS
Position: Chr06:22561358..22561481 (- strand)
Length: 124
Type: five_prime_UTR

>Vigan.06G115800.01 class=Sequence position=Chr06:22557423..22561481 (- strand)
ATTGTTTGGC AACCAACTAG TATGTGTAAA CATGACAGAC ACACAATTGA CGACATCATT TCTTTGTAAC TGTCGGCCCT
TCATTGCCCT GTCTTCGTAG GATTGCATTG CCATAACACG AAAAATGGCA CTTGTGAGCC ACGTTTGTGT GCGCTGTGCA
GCCACACCCA CTTCTCCAGA GTCTCCAAGC TCCGCGCCCT TGAGAGACCC AAAGCAGACC AAAGTTATCC TTCCCAAGAA
GAAGCCCGTG AAATGGTCCA CTGGGATGGC TCCTGGGGAG TACGGTGGTC CTCCCACCAC CACCAAGCTC CGCAAGTACT
GGGGTGGCGA TGATGAAGAC CCTTTGGCCT CTGATGACTA TATGTGGAAC AAAGAGTTTG TGGGTCGCTT CAAAAAGTTG
ATTCAAGATC CTCAAGCTCC AACCCCTCCT GCAAAGGTCT GAACTTTGGG TCAATTTGTT CTCTCACTCA CCCAATGTCC
ATCTGGGTTC GTGGTTTTTA AAATTCTGAT GTTGTGTATT GGTGTCTGTT TTTGTTGGAA ACTTGGATTG ATGTTGAACA
GCTGTTTGTG GGAGCACTGT CCTTGTGGTT ATGGTGATTG CTTTTTCTTT TGGCCTTTTT GTGCGTTTGA AATGATGAAC
TAGAGAAACA GATGAAATAA TCTCAATCAA TTACCTAATA TTGATTTTTT TGACTTTGTG TAAATATCTT TACTCGTGTA
ATCAATCCAT ATCCCCGTCA ACACTTGAAC TAACATTACA GGCCCCTGTA TTTCCTAAAA CAGATCCGCT TTATTTCTGT
GCGTAGGCGA ATGTGTAGAT TTACTCACAG TATATATACT TATCAAATGT TGACGTTGAC GTATATATAC TTATCATTCC
TGAAACATGG AATAATTCAG ACTTTACTTT TGATGAATAC AACAGTCATT TTGTTGACGT AGGTAGCTGA TCCCACCTAG
TGGGAGAAGG CCTTAGTTTT TGGTGGTGGT AACTCAAGAA ATGTTGGTGA ATGATTCAAG ATTATTTAAA TTTGTTTGTT
TCTATGTATT TGTTCTGACA TCAATTAAAT TCCTGTCAAC AGGAAGAGCC TTCAGGGTTT CTAAGCTTAA ATAGAGTCAT
GAGCCTGGAC AGGTCTCTTT CTACAATATT TAAATTAAAG TCTGCAAATC TGGTTGAATT ATTCTCTTTC TTTTGTTTAT
TATTTATCTA TAATGTTATT TTAATCATGA ACTGCAGTTT GGAAGTTGAT TTGAGTAAAG AACTTACAGC TCCTTTAAAT
CATAATGCAC ACAAGCAAGC TGAGGCAGAA ACTGATGTGA GAGATTTGTC TCTTCCCTTC ATTTTCCCCT GATTATTATG
TCATTGTGGA TTGATGACTT GTGGCATATC TCCAGCACTA GTGGGTTATG TTTTGGGGTA AATTGGGTAC ATACCTTGTA
ATGTTTCTCT ACATGATTCA TTTCATTTAA CTTTAACTGA AATGATGATC AGGAGACTAG AAATAACAGG GTAAAATATA
GAGCAGCACC AACACGCCGG GAGCAAGAAA AATGGAATAG AGCTACCAAG GCTGCAACTG GGGGAAGTGT AAGTAATGCT
TTTCTATTTC ATCTTAACTC TCTACATTAA GATCTAGCAT TGCACTTACT AACTGCATAT ATTTCTAACT TATATAACCT
TGGAGAAATC AATATTTACT GCGGTAAGAC ATTGCACTCA ACCAATGATA TATTTTTGAC TCAAAACAAA CCTTGACAAC
CTATGTACCA TTAGTATGTT TAGAACTTGA ATTTTACTAT TCAAAGGTCT GATTTAGAGT AGCTGTACTG CTATAGGATG
TGATGTTCCG CGAAATAAAG CAGTCTCGGG AAGATCCTAA AGTATTGGCT GCTCAAGCTC AAGAGCAGTA TGATAAGGTA
TTAAGCATTA TTGTCTGGTT AATTTTTTCT TTTTTGTTAG AGGTCATATG AATAAGTACC CTCTATTGTT TTGGCATTCA
CCAAATATCA AGTTTTTGTT AATTTTGTTC TTAAACATAT TTTTTGTTTT TCAGTTAAAG AAGAAGTTGC AAGTCCTTAC
CTTGGGTATT GGTGGTGTTG GTCTGGTTTC AGCATACGTT TCTTACACTC CTGAGATTGC AGCTAGGTAC TTGAATTCTT
CATGCTCCTA CTGATTTAGT TATCCTGAAT TCATGACCTT CCTCAATCTA TTCTATCTTT TGTAGATGCT AGCTAATATG
GTTCAATTGA GAGCTAAAAA TCAGTTCAAT ATAAAACCAC CATCCAGTAA ACATACGAAA AGGATTATAT AAACTAAAAA
CTTATTGACA TGGGATATGG TGTTGTTCTA GATTAGTTTA CCTAATGAGG ATTCAAACAT TTATTAGTTA ATTCACTTCA
TATTTAAAAC ATTTCTCCTT TCTGAACTTT TTAAGAAGCT TATAGTAATG TGTTTTGAGA ATTTAGGTGG GATAGAGAAA
CAAAGATTTT TCTTTTAATA GAAACGTTAT GGAAGGAAAT AAATGTTAAG ATATTTGTAT TCCCTGCATT TGAACAGAAT
GAGGAATTGA ATGGGAATGT ATTAGTTAAA TGATAATACT GGTTAACATC AGAGAGAAAG ATGTAAAGGT TTACTCATTT
GTTTAATATT TTTCTTTCAT GCATTCAGTT TTGGAGCTGG TTTTCTTGGT TCTTTGGCGT ACATTCGCAT GCTGGGAAGT
AGTGTGGACT CGCTAAAAAC TGATGGTGCA AAGGCTGTTG TCAAGTAATC TATATAGATG ATAGATTTAC TATTCAGAAT
TTAGTTTCTT TACTGGATAA ACTTGACTCT TGTATTGTAC TGTTCATCCC TATAAAAAAG TCCTATTAGA TGTCTTTCAC
AGTTTCTCTT CAACAAAGTA AGTCAACTTG GTCCGAATTA GATTCAAACA ATTTGTTGCT CATTTTTAAT GTGAAAATTG
TGGAGGTCAG TTTGTTTTTC ACCTTGTTTT TTTGTTATAA ACAACATAGG CTTATTGGCT GTTACTTGCA GGGGAGCAAT
TGGGCAGCCA AGATTGCTGG TTCCTGTTGT TCTAGTCATG GTCTATAACC GCTGGAATGC GTAAGTCCTC TTTTCATTTG
TAATTTCAAC ATTTATTATT TATTATGTTG TCCATTAAAT CAATTTGATT CGCAAACAAA TATTCCTGAT CAAGTTTTTA
GTTTTTCCAG GTACGGACGG CTCTTGTCAT GATTTTGTTT TTTCTTTCAT TTGGTTGAAC TTACTTTTGC CTTAATCTTT
CTTTTCTTTT TTTCCTTCTT CCTAAGAAAA CTTTTGAATA ATAGGCAATC ATAACCTTGA AAGTATCATT TGCAAGGCAT
TTTGACTGCC TTATATATGT TATTACCTAG ACATGATATC CAAATACATT GATGTTTGGA TTATGTATTT GATTGGATGT
CATTTTTGTC AATGATTTGT AGGTCTTGTG GCACTTCTTT GAGTCCAGTT TTTCTGCTGA GTTATTTTTG TGTTATCCTC
TTATGTGTCT TCAAAATCCA CTACTTTTGG TATATTAAAA AGATTTTTAA TATATTTTAA AACATAAAAG TCAGTGTAAA
CCAATGTATT TTAAGGGCAC AACAAAGGAC AAAAGAAAAA AAATTCATTA GAGAATCCAA ATTCCACTTG TTACTTTTTG
AAGAACGAGG TGAATGTACA TTGGTATTTA TTTGTGAACC TACTTATCTT AGTTTCTCCT GATTGCAGTA TTCTGGTTCC
AGAATTTGGA TATATGCACT TAGAATTGAT ACCAATGCTC GTAGGCTTTT TCACATACAA GATTGCTACT TTTGCTCAAG
CTATAGAGGA GGCAATTACT GTAGCTACAA GAAAGACCTG AAGAATGCAT TGTCATTGTA TATGGGGTTT CTCCCACATT
TGGAGCCTAT AAATTGTATT TGTTTATGTT TTTCCATATT TGGATTATTG ATACTTATAT ATTTAGTCTA CTATCCCATA
TGCTTTATGT CTTAAGTCTT TTCTCCCACA GCAAGAACTT TTCGATTTCA TTTTTCTCA

>Vigan.06G115800.01
ATTGTTTGGC AACCAACTAG TATGTGTAAA CATGACAGAC ACACAATTGA CGACATCATT TCTTTGTAAC TGTCGGCCCT
TCATTGCCCT GTCTTCGTAG GATTGCATTG CCATAACACG AAAAATGGCA CTTGTGAGCC ACGTTTGTGT GCGCTGTGCA
GCCACACCCA CTTCTCCAGA GTCTCCAAGC TCCGCGCCCT TGAGAGACCC AAAGCAGACC AAAGTTATCC TTCCCAAGAA
GAAGCCCGTG AAATGGTCCA CTGGGATGGC TCCTGGGGAG TACGGTGGTC CTCCCACCAC CACCAAGCTC CGCAAGTACT
GGGGTGGCGA TGATGAAGAC CCTTTGGCCT CTGATGACTA TATGTGGAAC AAAGAGTTTG TGGGTCGCTT CAAAAAGTTG
ATTCAAGATC CTCAAGCTCC AACCCCTCCT GCAAAGGAAG AGCCTTCAGG GTTTCTAAGC TTAAATAGAG TCATGAGCCT
GGACAGTTTG GAAGTTGATT TGAGTAAAGA ACTTACAGCT CCTTTAAATC ATAATGCACA CAAGCAAGCT GAGGCAGAAA
CTGATGAGAC TAGAAATAAC AGGGTAAAAT ATAGAGCAGC ACCAACACGC CGGGAGCAAG AAAAATGGAA TAGAGCTACC
AAGGCTGCAA CTGGGGGAAG TGATGTGATG TTCCGCGAAA TAAAGCAGTC TCGGGAAGAT CCTAAAGTAT TGGCTGCTCA
AGCTCAAGAG CAGTATGATA AGTTAAAGAA GAAGTTGCAA GTCCTTACCT TGGGTATTGG TGGTGTTGGT CTGGTTTCAG
CATACGTTTC TTACACTCCT GAGATTGCAG CTAGTTTTGG AGCTGGTTTT CTTGGTTCTT TGGCGTACAT TCGCATGCTG
GGAAGTAGTG TGGACTCGCT AAAAACTGAT GGTGCAAAGG CTGTTGTCAA GGGAGCAATT GGGCAGCCAA GATTGCTGGT
TCCTGTTGTT CTAGTCATGG TCTATAACCG CTGGAATGCT ATTCTGGTTC CAGAATTTGG ATATATGCAC TTAGAATTGA
TACCAATGCT CGTAGGCTTT TTCACATACA AGATTGCTAC TTTTGCTCAA GCTATAGAGG AGGCAATTAC TGTAGCTACA
AGAAAGACCT GAAGAATGCA TTGTCATTGT ATATGGGGTT TCTCCCACAT TTGGAGCCTA TAAATTGTAT TTGTTTATGT
TTTTCCATAT TTGGATTATT GATACTTATA TATTTAGTCT ACTATCCCAT ATGCTTTATG TCTTAAGTCT TTTCTCCCAC
AGCAAGAACT TTTCGATTTC ATTTTTCTCA 

>Vigan.06G115800.01
ATGGCACTTG TGAGCCACGT TTGTGTGCGC TGTGCAGCCA CACCCACTTC TCCAGAGTCT CCAAGCTCCG CGCCCTTGAG
AGACCCAAAG CAGACCAAAG TTATCCTTCC CAAGAAGAAG CCCGTGAAAT GGTCCACTGG GATGGCTCCT GGGGAGTACG
GTGGTCCTCC CACCACCACC AAGCTCCGCA AGTACTGGGG TGGCGATGAT GAAGACCCTT TGGCCTCTGA TGACTATATG
TGGAACAAAG AGTTTGTGGG TCGCTTCAAA AAGTTGATTC AAGATCCTCA AGCTCCAACC CCTCCTGCAA AGGAAGAGCC
TTCAGGGTTT CTAAGCTTAA ATAGAGTCAT GAGCCTGGAC AGTTTGGAAG TTGATTTGAG TAAAGAACTT ACAGCTCCTT
TAAATCATAA TGCACACAAG CAAGCTGAGG CAGAAACTGA TGAGACTAGA AATAACAGGG TAAAATATAG AGCAGCACCA
ACACGCCGGG AGCAAGAAAA ATGGAATAGA GCTACCAAGG CTGCAACTGG GGGAAGTGAT GTGATGTTCC GCGAAATAAA
GCAGTCTCGG GAAGATCCTA AAGTATTGGC TGCTCAAGCT CAAGAGCAGT ATGATAAGTT AAAGAAGAAG TTGCAAGTCC
TTACCTTGGG TATTGGTGGT GTTGGTCTGG TTTCAGCATA CGTTTCTTAC ACTCCTGAGA TTGCAGCTAG TTTTGGAGCT
GGTTTTCTTG GTTCTTTGGC GTACATTCGC ATGCTGGGAA GTAGTGTGGA CTCGCTAAAA ACTGATGGTG CAAAGGCTGT
TGTCAAGGGA GCAATTGGGC AGCCAAGATT GCTGGTTCCT GTTGTTCTAG TCATGGTCTA TAACCGCTGG AATGCTATTC
TGGTTCCAGA ATTTGGATAT ATGCACTTAG AATTGATACC AATGCTCGTA GGCTTTTTCA CATACAAGAT TGCTACTTTT
GCTCAAGCTA TAGAGGAGGC AATTACTGTA GCTACAAGAA AGACCTGA

>Vigan.06G115800.01
MALVSHVCVR CAATPTSPES PSSAPLRDPK QTKVILPKKK PVKWSTGMAP GEYGGPPTTT KLRKYWGGDD EDPLASDDYM
WNKEFVGRFK KLIQDPQAPT PPAKEEPSGF LSLNRVMSLD SLEVDLSKEL TAPLNHNAHK QAEAETDETR NNRVKYRAAP
TRREQEKWNR ATKAATGGSD VMFREIKQSR EDPKVLAAQA QEQYDKLKKK LQVLTLGIGG VGLVSAYVSY TPEIAASFGA
GFLGSLAYIR MLGSSVDSLK TDGAKAVVKG AIGQPRLLVP VVLVMVYNRW NAILVPEFGY MHLELIPMLV GFFTYKIATF
AQAIEEAITV ATRKT*