GBrowse Details

Vigan.06G040800.01

Basic Information:
Name: Vigan.06G040800.01
Multiple alignment
Variant Information
Position: Chr06:4932387..4936397 (- strand)
Length: 4011
Functional Information:
Description: Similar to 50S ribosomal protein L13, chloroplastic-like. [XP_004516022.1, Cicer arietinum]
GO: Biological Process: translation (GO:0006412)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L13 (IPR005822)
Ribosomal protein L13, bacterial-type (IPR005823)
Ribosomal protein L13, conserved site (IPR023563)
Ribosomal protein L13 domain (IPR023564)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:12.06,11.25,25.30,112.28,5.97,12.02,5.77,16.49
Arabidopsis thaliana homolog: AT1G78630.1
Automatic updates:
Name: NM_001248906 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 50S ribosomal protein L13 (LOC100305981), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:4932387..4932994 (- strand)
Length: 608
Type: three_prime_UTR
Position: Chr06:4932995..4933111 (- strand)
Length: 117
Type: CDS
Position: Chr06:4933612..4933782 (- strand)
Length: 171
Type: CDS
Position: Chr06:4935231..4935416 (- strand)
Length: 186
Type: CDS
Position: Chr06:4936043..4936291 (- strand)
Length: 249
Type: CDS
Position: Chr06:4936292..4936397 (- strand)
Length: 106
Type: five_prime_UTR

>Vigan.06G040800.01 class=Sequence position=Chr06:4932387..4936397 (- strand)
CTTATATCTC CTAGTCCCAT ATCGCTCAAT CGCTAAACGT TATCCAAACA AAAGAAACAC TGAAGGAAGC CATATAGCGA
AAGAGATAGA GCGATAAAGC GAGACAATGG CGCTGCTGTG TGGTTCAACT TCTGTAACTC CGTTACTTTC CCACAAGAAC
GTGGTCGCAG CCTCTACAAA ATCTTCCTTT GGAGGCTTCC AATTGTCACT TCCAAAGCTT ACATTAACTT CTTCTGTTCG
AACCCTTTTA CCCTCAAATT CCCGTATCCG TTGTCAACAG GAATCTACCA CACCTGCCCC AGTCGAAGAC CCGCGTTTCG
CCTGCGTCGA GCCCGAACCC CGATTCAAAG GCCCGGTACA ATGCAACCGT TGTTTTTTTT TTTTTAAACT TATGAAGAAG
TCAATTTCAT TTTATTTGGA GGAACTTTGG TAGAATAGCT CATCCAAACA TACCTTTAAT AGGTAGTCGC TAAGTTTAAC
TAAATTCTTA TATATTTTTC TCTGTTGATT TAGTGCTTAG TTTTAATTAA ATTGTAACTT TTTTTTTATT TAAGTCTCTA
AATTAATTAC TCATCGTCAT TTCGGTCCCT GAGCAGATTT TAATATTATC ACTAAAGTCA CCTAAAATGA GTGGTGGGTT
ATAGTTGGGG AGATTTTTTG ATTTGGTTAA TAGTAAGGAT TAATGTGACT GTCAATTACA ATTTTAGGAA CTAAATTGAC
CATTTATTCT TTTTGTTTTC ATTTTATTTT CTTTTTTAAT TCTTTAAGTG GTTTTTAATC TTTACGTCAG TTTTTCTATT
GAAGTTAGTT TGAAGGTGGA TTCTAGTGTT TGTTATGAAT TTCAAAAGAA TACTGATGTT AAATTTAAGT GTCTGAATGC
AATTTTTGTA CGTGTTGTTG TCTTTAAAGA TTTTTAACTT TATTGATGTT TTTTATTTTG TTGGGTGAAT TTGAACTCCC
CAACCAAAAA ATAAATTGCA GGACATTTGG AACAAGAGCT GGTATCCAAA AGCTGCAGAT CATGTAAATA CAGAGAAAAC
ATGGTATGTT GTTGACGCTA CAGATAAAGT TCTTGGAAGA TTAGCTTCTA CAATTGCTAT TCACATCCGA GGGAAAAACT
TAGCAACCTA CACACCCAGT GTGGACATGG GTGCATTTGT AATTGTGGTA TGTAGCTCTG CATAGGTTAT TTCTCATGTA
GTTATGATTA TATTTATGCA TTCTACCTGT CTGTTTGTGA GTGGCAATGG AAGTACTACT TCAATTGTAT AAACCCTTTG
TTAATTAGCT AGAACAGGGT ATGTATAGAA AGATTAGGAG GGGAAGTTGT AGATTTGGAA TAGGAATTTT GCGAAGGAGT
AAGTATAGTC TCTTGGATAC TTGGTATTTC AGAAGGAGAA AGAGAAACAT CCATTGGGGT TTTTGGAATT GACCAATAGT
TGCCAGGAGT TTATTACATT TTTATCTTTC TTTTAAATGG TAGGCCTTAT GATTTGAATT TGAACCTAAC ATTTTTTTTT
TATCGGCAAT GTTAGTTAGT ATTTGTTTCC AACTTTATCA CTAAATCATC CTTTTATCTC CAAATTTGAA CCTAGCATAG
TTACACAAAA CTAACTTGTA AGATAACATT AATTTCCACT TATACACTAT ATTATGGCAT AAAACTGATA CAAGACTTGG
GTTTTTCGCA ATAGTAGGGA ACAACAAAAA TGAATTACAT GCAACTGATA TCATGTTTTA TTAAGTTAAC GTTATCATTT
TTAGCTCTAT TTCTGTAATA ATCTTCTATT TGACAGCACC TTCAATTAAA TTATATATTT TTTGTATATT GGTTCTCAAC
TTTAGCTGTA ATCAATGTAT TGTTTTTTGC ATCATATTTG GAAAAATCTT GATTAAGCTG CACTTAATCA TTTTATGTTT
GAGTACATGA TTTTTGGATT GTTTAAATTG CTGCAAAAGC ATTATTCTTT TATATAATCA GTTAATTATC ATTCCATTAT
GTAAATATGA AGATAGGGAT TCTTCTGCAT TTAAATTTTC CAATATCCCT ATATTGTAAA TAGTTTGTTA GATATATTAT
CTTTATCTTT TATCTTAGTT AGTTGGTTAT TATTTCTTAT CTATATTTTG GACTTAGTCC ATATTTCTTT TATTATAAAT
AGGAAACTCT ATGTGTATAT TGAACCCAAG AGAGATTAAT CTCATACTTT GTTTTCACTA TATTCAACAC AGTTTTTATG
CAATATTGCA GTTGATGTTT GATTTCAATT ATATAATCTT GAGGACAACT TATGATCCAA GAACAGTTTT CAAATTTCGT
TGATAAACAG TTTTTCTAGA AGAAAAATGA AAAGGTATAT TAAGGAAACA CGATCTCCTT TATGAAAATA TTCTATATTA
ATGATAACAT TACTGCTTGG TTTCTCACTT TTCACACGAT TGTCTGTGTT AGGCAGCCTG AACCTTATGG AGAAGGTTTA
AGTAATAAGA ATGTATCTGA TTATATTTTC TTCTTTTCCT ATTGATGAGT GAAGGACATG TGCTACTTAC ATATAAAGTT
TTGTGATGCC ATACCAAGTC TGAATCTGTT TATTATTTAA CTTGGGGCTC GAAAGGTAAA TGCTGAAAAG ATTGCTGTAT
CTGGGAAAAA GAGGACTCAA AAGCTTTATA GAAGACACTC TGGAAGACCT GGTGGTATGA CGGTGGAGAC ATTTGCTCAG
CTGCAAAACA GAATTCCTGA AAGAATTATT GAACATGCTG TTCGGGGCAT GCTTCCAAAA GGGAGGGTAA GTTCAAGTGT
GGTTGAATAT TTTTCTAAGA CATGCCCATA TCGGAAGTAG AAATGTTAAA CCGACTTGTT GTTGTATGGT AATTGTAGAG
ATAGTAACAA TTCTAAATTG GGTGATTAGT TTTCATGACA TTCCACATGT AAGATTCAGC CCCATAATTG ATGGAAGAAT
TTAGTGGTGA AGAATGAAGT GAATCCCAGG ATTGTAAATT AGCCGAAGAT TTTTGTGTTG AAAGGAATGC GTGGATATTT
TGAAGGACAG ACTATACTCA TGATCATGCT TTGGGACATG ATTTTCTTTT TGCGCTGTTC AACGCAAGAG TCATTTTTCT
GGTGTTCCTA TATTTCAGGA CTGGAAAACT CTTGCGTTGG TAATTTTATC TTCTAAGGAT GGTTAACTTC ATGTGCTATA
TGCTCTTTGA TTTATTTATT TCTGTGAAAA TAATGCTCAG TTTTTCGTTG AATCGACTAT AATCAAGGGT TGCTTGTTTT
ATTTAGCTTG GCAGGAGACT ATTCACCCAC CTGAAGGTTT ACAAGGGCCC CGATCATCCA CATGCGGCAC AAAAGCCCAT
TGACTTGCCA ATAAGGGATA AGAGAATACA ACTCCAGAAA TAGGTCACAG TTGCCGTCGA GAAAATGGAA TGATATATGA
CAATCGTAAC TCTATCCATT TTGCAGAACA TCGAGTTTCC TGCTTTGGCT TCCACCTTGC TGATGTCTTC CATTAATGTT
TATATTGTCT GTAGAGGTAA CTGATTATTG TATTATTTTG TTTGTGTTTA AGGTCCTTTG TTGAATCTTC ATAATATTTT
TGTTGTAGAT TTGAATCTTA GTCATGTCAT ATTTTTTAAT ATGCTTGAGT TTATTGTCAG CTTTATTATT TGAAGGAAAC
GTCCATGCCT TTTATTTTTT TCTTTAATTG TTTAGACCCC AAAATGGAAA GAAAAAAATG AATCGAAGAA AAGAAGATCG
AAGTGGAGGT TATGCCACTT TCTACTAGCT CTAGTACTGT ATGATATTGC TTTGTCATGC ATTTCATATA TGTGTTTGAC
TACAGTAGAT TTGGACTTAG AGAGAAGGAT ACATTGAGAG AGTGTCTTTG TATTGCTTCT TGTAAAACTC AATCTATATA
GTGCATGTGC TTTCAATCCC AGGTTGATTG AAAGAGACTA GATGTAGGCA TTGAAGCGGA ACCAGTATAA ACCTTAGTGT
GGTTCTTTCT A

>Vigan.06G040800.01
CTTATATCTC CTAGTCCCAT ATCGCTCAAT CGCTAAACGT TATCCAAACA AAAGAAACAC TGAAGGAAGC CATATAGCGA
AAGAGATAGA GCGATAAAGC GAGACAATGG CGCTGCTGTG TGGTTCAACT TCTGTAACTC CGTTACTTTC CCACAAGAAC
GTGGTCGCAG CCTCTACAAA ATCTTCCTTT GGAGGCTTCC AATTGTCACT TCCAAAGCTT ACATTAACTT CTTCTGTTCG
AACCCTTTTA CCCTCAAATT CCCGTATCCG TTGTCAACAG GAATCTACCA CACCTGCCCC AGTCGAAGAC CCGCGTTTCG
CCTGCGTCGA GCCCGAACCC CGATTCAAAG GCCCGGACAT TTGGAACAAG AGCTGGTATC CAAAAGCTGC AGATCATGTA
AATACAGAGA AAACATGGTA TGTTGTTGAC GCTACAGATA AAGTTCTTGG AAGATTAGCT TCTACAATTG CTATTCACAT
CCGAGGGAAA AACTTAGCAA CCTACACACC CAGTGTGGAC ATGGGTGCAT TTGTAATTGT GGTAAATGCT GAAAAGATTG
CTGTATCTGG GAAAAAGAGG ACTCAAAAGC TTTATAGAAG ACACTCTGGA AGACCTGGTG GTATGACGGT GGAGACATTT
GCTCAGCTGC AAAACAGAAT TCCTGAAAGA ATTATTGAAC ATGCTGTTCG GGGCATGCTT CCAAAAGGGA GGCTTGGCAG
GAGACTATTC ACCCACCTGA AGGTTTACAA GGGCCCCGAT CATCCACATG CGGCACAAAA GCCCATTGAC TTGCCAATAA
GGGATAAGAG AATACAACTC CAGAAATAGG TCACAGTTGC CGTCGAGAAA ATGGAATGAT ATATGACAAT CGTAACTCTA
TCCATTTTGC AGAACATCGA GTTTCCTGCT TTGGCTTCCA CCTTGCTGAT GTCTTCCATT AATGTTTATA TTGTCTGTAG
AGGTAACTGA TTATTGTATT ATTTTGTTTG TGTTTAAGGT CCTTTGTTGA ATCTTCATAA TATTTTTGTT GTAGATTTGA
ATCTTAGTCA TGTCATATTT TTTAATATGC TTGAGTTTAT TGTCAGCTTT ATTATTTGAA GGAAACGTCC ATGCCTTTTA
TTTTTTTCTT TAATTGTTTA GACCCCAAAA TGGAAAGAAA AAAATGAATC GAAGAAAAGA AGATCGAAGT GGAGGTTATG
CCACTTTCTA CTAGCTCTAG TACTGTATGA TATTGCTTTG TCATGCATTT CATATATGTG TTTGACTACA GTAGATTTGG
ACTTAGAGAG AAGGATACAT TGAGAGAGTG TCTTTGTATT GCTTCTTGTA AAACTCAATC TATATAGTGC ATGTGCTTTC
AATCCCAGGT TGATTGAAAG AGACTAGATG TAGGCATTGA AGCGGAACCA GTATAAACCT TAGTGTGGTT CTTTCTA

>Vigan.06G040800.01
ATGGCGCTGC TGTGTGGTTC AACTTCTGTA ACTCCGTTAC TTTCCCACAA GAACGTGGTC GCAGCCTCTA CAAAATCTTC
CTTTGGAGGC TTCCAATTGT CACTTCCAAA GCTTACATTA ACTTCTTCTG TTCGAACCCT TTTACCCTCA AATTCCCGTA
TCCGTTGTCA ACAGGAATCT ACCACACCTG CCCCAGTCGA AGACCCGCGT TTCGCCTGCG TCGAGCCCGA ACCCCGATTC
AAAGGCCCGG ACATTTGGAA CAAGAGCTGG TATCCAAAAG CTGCAGATCA TGTAAATACA GAGAAAACAT GGTATGTTGT
TGACGCTACA GATAAAGTTC TTGGAAGATT AGCTTCTACA ATTGCTATTC ACATCCGAGG GAAAAACTTA GCAACCTACA
CACCCAGTGT GGACATGGGT GCATTTGTAA TTGTGGTAAA TGCTGAAAAG ATTGCTGTAT CTGGGAAAAA GAGGACTCAA
AAGCTTTATA GAAGACACTC TGGAAGACCT GGTGGTATGA CGGTGGAGAC ATTTGCTCAG CTGCAAAACA GAATTCCTGA
AAGAATTATT GAACATGCTG TTCGGGGCAT GCTTCCAAAA GGGAGGCTTG GCAGGAGACT ATTCACCCAC CTGAAGGTTT
ACAAGGGCCC CGATCATCCA CATGCGGCAC AAAAGCCCAT TGACTTGCCA ATAAGGGATA AGAGAATACA ACTCCAGAAA
TAG

>Vigan.06G040800.01
MALLCGSTSV TPLLSHKNVV AASTKSSFGG FQLSLPKLTL TSSVRTLLPS NSRIRCQQES TTPAPVEDPR FACVEPEPRF
KGPDIWNKSW YPKAADHVNT EKTWYVVDAT DKVLGRLAST IAIHIRGKNL ATYTPSVDMG AFVIVVNAEK IAVSGKKRTQ
KLYRRHSGRP GGMTVETFAQ LQNRIPERII EHAVRGMLPK GRLGRRLFTH LKVYKGPDHP HAAQKPIDLP IRDKRIQLQK
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