GBrowse Details

Vigan.06G030200.01

Basic Information:
Name: Vigan.06G030200.01
Multiple alignment
Variant Information
Position: Chr06:3479150..3484489 (- strand)
Length: 5340
Functional Information:
Description: Similar to Nuclear transcription factor Y subunit C8. [I3TAY5, Medicago truncatula]
GO: Cellular Component: intracellular (GO:0005622)
Molecular Function: sequence-specific DNA binding (GO:0043565)
Molecular Function: protein heterodimerization activity (GO:0046982)
InterPro: Transcription factor CBF/NF-Y/archaeal histone (IPR003958)
Histone-fold (IPR009072)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:63.44,56.19,19.38,28.69,57.00,35.00, 29.32,18.92
Arabidopsis thaliana homolog: AT3G12480.1
Automatic updates:
Name: NM_001363970 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max class 2 transcription repressor NC2 alpha 4 (LOC100814712), mRNA.
PubMed ID: 25542200 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:3479150..3479730 (- strand)
Length: 581
Type: three_prime_UTR
Position: Chr06:3479731..3480192 (- strand)
Length: 462
Type: CDS
Position: Chr06:3480890..3480947 (- strand)
Length: 58
Type: CDS
Position: Chr06:3481047..3481175 (- strand)
Length: 129
Type: CDS
Position: Chr06:3482414..3482507 (- strand)
Length: 94
Type: CDS
Position: Chr06:3482604..3482676 (- strand)
Length: 73
Type: CDS
Position: Chr06:3484129..3484161 (- strand)
Length: 33
Type: CDS
Position: Chr06:3484162..3484489 (- strand)
Length: 328
Type: five_prime_UTR

>Vigan.06G030200.01 class=Sequence position=Chr06:3479150..3484489 (- strand)
ATTATCTCTC AACACGTCAC CGTTTTGACT CCTTCCTTTT AACACACTCT CACCTTCTTC TGCCTACATG CTTTACATCT
ATTGGGCGGT GACACGATTC CTGTCAATGG CATGTATTTG TAACAAAACC CTTGCTGAGG CATATCTCGT TGAATGAATC
CTTGAGAGAG AGTGGCCTTT GGATCTGAAA TGGGTTTCTT CGATTTCATC GTGTTGATGT TGGGGTCACT CTTTTTGTTC
AAAGCTTTCG ATTTTGCTTT TTTGATCTCT CTCTTCTGCT CCATTTGATT CCCCCAATTC TTCAGTGTTC TAACCCTAAT
CTGTTGCCAT GAGGAAGAAG CTCGATACCC GTTTCCCTGC TGTAAGTGTT CTCCATTTTC TCTTTGTAAA GATTGTATTT
TGTCTTAGGT TTCTGTTATT TGGATGCAAG GAAAAGTGTG TGGAAGTGAC AGCAATTGAG CTAATCTCGA CTGTGCTTTT
GTTTGTCTTT TTTGGTTTTT TTTTCTTGAG AAAAAAAGGT TCTGGTTTAT GATAAATGTT TATACTTTGT TACGATTTAT
GGGTTTCATG TGTTTGGGTT TATGGACTTA ATAATTAAAG TGGGTGATTT TATGTTGATG TGGGTATTCT GGAGACTTGT
GTTACTTTTA GGTTATTGAC ATAGCTTAGG TTTTTTAAAA ATAAAAAAAC TTTTTGGGTT TGTTTGGGAA CTGTGGTTTA
AGGATACTTG ATTGACGTGT CACTGAAGAC TGCTGAAGAG GATACTGATG GGTTTATGTT TTTTGTGTTT CTGATGATTT
TGGTTCTCCC ACAGTCCTCA TTTGTTGTGG ACTTGGGATA GAACCGGCCT TTTTTAAATT CAACAATTCA GTATCCCATT
GTGAAATTAC ATCTTCTCTG AAATTTGAAA TCAGTTTTGC AAGTTAACCT GATTTCTGTT TAAAACGTGT GTCTACTTCA
CATTTTTAAT ATTTTAAAGC CTGAATAAAT TTCTTACATC GCTTGTAAAT GTTAATTATT CTTCAGAATA TGGTGGGCTA
ACTAGTTGCG AGCTGAGTTA ACATCAGTCT TTAATGTACG GTGTCAGGGA TTTATAATAG AATACAGTTA TTCCTTTAAG
GATTGATTAT GATGACATCA ATTAGGAAGA CTATTTGATG TTAGTGACAT TTTCGAATCT ATGGTAATTT TTAGCCAGGT
GTTACTGTTA GGCATAGCTT TGCTAAATCG GGTGGGATAT ACAAGTAAGG AGTAAAGAAG GAATTTGGGT TGCAAGGAGG
GTAGGAAGGA AAAGAAAACA ATTATAAGCA ACGAAAAAGG GAGGGAAGCC ATTGAGGGAG TGTTTTAGGC TGTTTTAGGA
ACTGGTGGAA GAGATGCAGA CACTTGAAGA TTTGTAGTGT TCCATATTTT GTTTCTTGTT TTGTGAGGCA CTCTGGTCTT
TGTAATTGGA GTTTATACCT ATTTCTCTCT GATAAAATAC CTTGTTTCTA TCACTTTTAT CCCATTATAT CTTTCTAGCA
TATAGAAGTC TTCATGTACA ATTAACAAAG ACCTTACAGT AACTACCAAT AATTAGAGAA TTGGGAGACA TGATATTGTT
TTTACCTTAT TTATAAAAGG GTAAAACTTT AGGGAGACAG GGCAAGCCAC TGCTTCTATA AACTTCAAAT CAAGTTATAA
GTTGTAACTA ACACAAGGAC TAATTTGTAA TTTGGCCTCT GTTAAATTCT TCTACTTGTC TTTAAAGTAT CATGAGGAGT
GAGCTCTTGG AAAAGAACAA TTTATTTTGA GTGATGAAAC CTTCAAATTG CAGGCTCGGA TAAAGAAGAT AATGCAAGCA
GATGAGGATG TTGGAAAGAT AGCACTGGCT GTTCCTGTTT TAGTTTGTAA GTTGCTGTGG TTTACTGTAT TGTTAACTTC
AGACCGCTTC TTGCTTGTTT CTCTTATATA TGTTGTTGAC ACTGCTCTTA AATGGATTTC AGCTAAAGCT CTAGAACTAT
TTTTGCAAGA TCTTTGTGAC CGTACTTATG AAATAACTCT TCAAAGAGGA GCAAAGACCA TGAATTCGTT GCATTTGTAA
GTCTGTTTCT TTTGCTTCAA TCTTCCATTT TAGTGATTGG GAACTAACTC GAGAACTTAG TTACAATAAT GCCTTTATAG
AAGATTTCTT TTATATTTTT AGATTTAATT TCAATTTCCA ATTCCCTTTT TCATATATCC AAGTTAAAAA TGGAAGCTAA
ATGTGAGACA GGAAAGTAGT CAGTTTTTAA GCTATAAAAA TTCATAATCA TTTAATCTAA GTATGAATGT TAAAATTTTA
TTAGAAGCAT TTATGTCTAA ACTTAAAAGT TAATGTGCTT GTTGGGGTAT GCATCCATGA TGTGTAAAAT AGATTGTTAA
AGTTTATTGG TATATCTTAT TTGTACTGTC ACTTCAGCAT ATTTTTTGTA TTGGCGTGTT TATGAACTTG TAACATGTTT
TGTATATCTT AACTTGAATC TGAAGGAAAT TATGATAGGA CTGGAAAGAA AAATAAAGGG CACCAGGTTT CAACACTGAA
AACTGCTTAC TACATTGTCA TAAGCTTGCC GATGCTCAAA ATGTTTTAAG TATGGATTAA CTCTTAAAAA AGTTTTCTAA
AAGCAAAAAG GGGAAGGGTT GAGTTCCACC ATGGGCACCA CAGCTTGGCA GTGGCTAAGG GATGACAACA ATTTTCTATC
TTCCAAAAGT CTCATTCACT TGGACTCCAA GTTGTTAAAA ACTAAGATCA AATTAAATCT ATTTTTGTTT TCTGAAACTA
CATTGGTAGC TGTGGCTTTT CCCTGTACTG ACAATTGCAT AAAATAACTG TTAATTCCAC GTATGATTCA CCTTTTTCTC
ACTATTTTAT TAGCCACGGT CTCATATTTT ATTCTTTGTT TGTCTTGCCA TTTGTTTCAC TCCAAAGTCT ATCATAAATA
ATTTTTTTTA CGAGTTAAAC AATTTATCTG GTTGCCTTGT AAATAGGATA CTTGTGATTT CAAATATTAG TGGCTCTTGG
CAATGTTCAA ATTCTGAATT GTGTGCTATA TTTTGGAGGG TATTCCCCCT GTCGATTCTA AAATTTAAGG AATTGATGGC
ACCGAGGAAC TGCCTTAACA ACCCCTAGCA TTTCTTGTGT TCTCAGACAT CTTTTAATTA ATTTTACTAT GATATCCAGA
TTCCGTTTGG TTATGATATT ATATTGTTTC TCTTATCTGC CTTCCAAACT CCATTTATAA TAAGGACTAT GAACTATGAA
ATCAAGTCTA ACAAATTGTG ACTGTAAATT GCAGGAAACA TTGTGTACAA AGCTATAATG TCTTTGACTT TCTGAGGGAC
GTTGTTAGCA GAGTTCCTGA TTACGGTCAT GGTCATGGCC ATGCTGAGGC TGGTGCTGAT GATCGGGCCA TTTCAAAAAG
AAGGTTTGAA TCCAATATCT TTGTTTTGTT TTGTTTTACC CTTCTGATAT GCATATTGTT AGTTATGTAC TTAACATTTA
ACAATGCTGT CTACTTTTCC AGGAAAGCTG TTGGTGATGA TTGTAATGAC AGTGATGAAG AGGTTAAGAG AAGCAAGATG
GTAATTTAAT TTTTTTATGT ATTTGCACAA AAACCCTTAA TAACATACTA CTCAATCATA ATTAATGCTT GTGGCAACCC
TCTTGTTCCC TTTTGTTTAC ATAATTTTTT GTTTTAATTT CTCATTTAGT GCCAATCACG CATTCATGAT TAAGCCTTTT
CCACAAAATG CCTCATATCT TACCAGTAAC ATAGAATCCA AATTGTGTTT AACTTTATAG AAAAATGAAG TCCCCTAAAC
GATTGTATAA AAATATACTC CACAAGGTTT TGATATTATC ATTTTCAGTT TTAGTTCCAC AAAAAACCAG TACTTACACA
TCTACATGTC TACGACTTTC TTTAAAATGT TACCATATCT GGCACCCTAT AAAAGGGCTA TTTGGTTTGA GAAGTTTTCT
ATTTTCATTT GTAATTACAA AAAGGTCACC TTGTTTACAT TTTATTTGCT ATTTTTAAAA CTTTGAACTG GAAATAGTGG
TAATTGCTAT TTATTGTTTT ATGTTTTCAT TAATTCTAAG TTGAAATACT AAATAACAAA AAAAAATATT TTCTCAAACC
AATGCTTTTA CTAGCATAGT TTGTCATCTG TAGAACACAA AAATCATGAG AGTCTTGCAA ATGATGTTGG TATATATACC
TAGCAGACCC TTGATGTACA TCATGTTTTG CTCAATAATG TTTTTCTTCT ATTCCAGCAA GAGTTGAGCC ACACTGGCAG
TACTGGTAGG GGAAGAGGCC GGGGTAGAGG TAGAGGCCGT GGCCGAGGGC GACCACCTTT AGTAAGAGAC ACATATCATC
AGGATGCTGA ATCTGAGCCA TGCCCCTCTG TTCAGCCGAG CAACCAACAA AGTGCTATCC CAAGTGTTGC AGTGGACAGT
GGTTCTGAGT CAAAAGATAT ACCAAAGGAG GAGAATGTTG CAGCTCCTGT TGTAAGCGCT GATTCACTCC GAAACATTGA
CCTGAATGCC ATTACGAATG AAAATGATGA CAAAAAAGCT AGCGTGGCAG AACCTCCTTC AACAGAGGGC AAGCATGAAG
AGATTCTGGG GTGGCCCCTT TCTGATGTGG ACAAGATGGC CATTGATTCG ACACAGCTTG CGCAGCTGAG TAGGCCATTA
GAAGAGGAGG AGGAAGATTA TGACGAGGAG GAGGGGTAAA TATTATAGTC TTTGGGTGAT TAGATTAGTG AAAAAGCTCA
TGATAACTGT AGAATAAGTA CATACTAGTG TTATGATTAT GAGTACCCAC TAGCTGTCAA AACATGTCCC ATGTTGGCGG
CTGGCTGAAA AAAGGGTCTG AATGTACCTT CAGATCCCCT TTTTATTAAT CCGGTTTGTA TGTGTAGCTG ATGATGTATC
GTTCAATTGA CCAGTAATGT TAGCTTTGTA CTCTTAGGTC TACAATGTAT GTATATCACA ATTCTAGATG GAGTGAAATT
TATGCATGCA ACCTTATTTA ATATTGCTGC AGAAACTTTG ACTATTTGCC AGTCTCTCAG CTAATGTCTA TCCCTTTTTG
GCAAAGATGG ATTGGCATAT CTATACAAGC AGGGCTGGCT AAAGTAGTTT TGTATCATTT GCATTGCTTC AGAATTAGAT
AAATAGTTAT TCTGGTGAAG TTTTACAAAA ATCAAAACAG TGAAGTCTCT GTTATAAAAA CTTTGTTGAG TTTGTTTATT
TGAGTTTTTT ATGTTTTTAA AACTCATCAC AAAAGCATCG GTAGAAAAAG CAGTCTGACA 

>Vigan.06G030200.01
ATTATCTCTC AACACGTCAC CGTTTTGACT CCTTCCTTTT AACACACTCT CACCTTCTTC TGCCTACATG CTTTACATCT
ATTGGGCGGT GACACGATTC CTGTCAATGG CATGTATTTG TAACAAAACC CTTGCTGAGG CATATCTCGT TGAATGAATC
CTTGAGAGAG AGTGGCCTTT GGATCTGAAA TGGGTTTCTT CGATTTCATC GTGTTGATGT TGGGGTCACT CTTTTTGTTC
AAAGCTTTCG ATTTTGCTTT TTTGATCTCT CTCTTCTGCT CCATTTGATT CCCCCAATTC TTCAGTGTTC TAACCCTAAT
CTGTTGCCAT GAGGAAGAAG CTCGATACCC GTTTCCCTGC TGCTCGGATA AAGAAGATAA TGCAAGCAGA TGAGGATGTT
GGAAAGATAG CACTGGCTGT TCCTGTTTTA GTTTCTAAAG CTCTAGAACT ATTTTTGCAA GATCTTTGTG ACCGTACTTA
TGAAATAACT CTTCAAAGAG GAGCAAAGAC CATGAATTCG TTGCATTTGA AACATTGTGT ACAAAGCTAT AATGTCTTTG
ACTTTCTGAG GGACGTTGTT AGCAGAGTTC CTGATTACGG TCATGGTCAT GGCCATGCTG AGGCTGGTGC TGATGATCGG
GCCATTTCAA AAAGAAGGAA AGCTGTTGGT GATGATTGTA ATGACAGTGA TGAAGAGGTT AAGAGAAGCA AGATGCAAGA
GTTGAGCCAC ACTGGCAGTA CTGGTAGGGG AAGAGGCCGG GGTAGAGGTA GAGGCCGTGG CCGAGGGCGA CCACCTTTAG
TAAGAGACAC ATATCATCAG GATGCTGAAT CTGAGCCATG CCCCTCTGTT CAGCCGAGCA ACCAACAAAG TGCTATCCCA
AGTGTTGCAG TGGACAGTGG TTCTGAGTCA AAAGATATAC CAAAGGAGGA GAATGTTGCA GCTCCTGTTG TAAGCGCTGA
TTCACTCCGA AACATTGACC TGAATGCCAT TACGAATGAA AATGATGACA AAAAAGCTAG CGTGGCAGAA CCTCCTTCAA
CAGAGGGCAA GCATGAAGAG ATTCTGGGGT GGCCCCTTTC TGATGTGGAC AAGATGGCCA TTGATTCGAC ACAGCTTGCG
CAGCTGAGTA GGCCATTAGA AGAGGAGGAG GAAGATTATG ACGAGGAGGA GGGGTAAATA TTATAGTCTT TGGGTGATTA
GATTAGTGAA AAAGCTCATG ATAACTGTAG AATAAGTACA TACTAGTGTT ATGATTATGA GTACCCACTA GCTGTCAAAA
CATGTCCCAT GTTGGCGGCT GGCTGAAAAA AGGGTCTGAA TGTACCTTCA GATCCCCTTT TTATTAATCC GGTTTGTATG
TGTAGCTGAT GATGTATCGT TCAATTGACC AGTAATGTTA GCTTTGTACT CTTAGGTCTA CAATGTATGT ATATCACAAT
TCTAGATGGA GTGAAATTTA TGCATGCAAC CTTATTTAAT ATTGCTGCAG AAACTTTGAC TATTTGCCAG TCTCTCAGCT
AATGTCTATC CCTTTTTGGC AAAGATGGAT TGGCATATCT ATACAAGCAG GGCTGGCTAA AGTAGTTTTG TATCATTTGC
ATTGCTTCAG AATTAGATAA ATAGTTATTC TGGTGAAGTT TTACAAAAAT CAAAACAGTG AAGTCTCTGT TATAAAAACT
TTGTTGAGTT TGTTTATTTG AGTTTTTTAT GTTTTTAAAA CTCATCACAA AAGCATCGGT AGAAAAAGCA GTCTGACA

>Vigan.06G030200.01
ATGAGGAAGA AGCTCGATAC CCGTTTCCCT GCTGCTCGGA TAAAGAAGAT AATGCAAGCA GATGAGGATG TTGGAAAGAT
AGCACTGGCT GTTCCTGTTT TAGTTTCTAA AGCTCTAGAA CTATTTTTGC AAGATCTTTG TGACCGTACT TATGAAATAA
CTCTTCAAAG AGGAGCAAAG ACCATGAATT CGTTGCATTT GAAACATTGT GTACAAAGCT ATAATGTCTT TGACTTTCTG
AGGGACGTTG TTAGCAGAGT TCCTGATTAC GGTCATGGTC ATGGCCATGC TGAGGCTGGT GCTGATGATC GGGCCATTTC
AAAAAGAAGG AAAGCTGTTG GTGATGATTG TAATGACAGT GATGAAGAGG TTAAGAGAAG CAAGATGCAA GAGTTGAGCC
ACACTGGCAG TACTGGTAGG GGAAGAGGCC GGGGTAGAGG TAGAGGCCGT GGCCGAGGGC GACCACCTTT AGTAAGAGAC
ACATATCATC AGGATGCTGA ATCTGAGCCA TGCCCCTCTG TTCAGCCGAG CAACCAACAA AGTGCTATCC CAAGTGTTGC
AGTGGACAGT GGTTCTGAGT CAAAAGATAT ACCAAAGGAG GAGAATGTTG CAGCTCCTGT TGTAAGCGCT GATTCACTCC
GAAACATTGA CCTGAATGCC ATTACGAATG AAAATGATGA CAAAAAAGCT AGCGTGGCAG AACCTCCTTC AACAGAGGGC
AAGCATGAAG AGATTCTGGG GTGGCCCCTT TCTGATGTGG ACAAGATGGC CATTGATTCG ACACAGCTTG CGCAGCTGAG
TAGGCCATTA GAAGAGGAGG AGGAAGATTA TGACGAGGAG GAGGGGTAA

>Vigan.06G030200.01
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK TMNSLHLKHC VQSYNVFDFL
RDVVSRVPDY GHGHGHAEAG ADDRAISKRR KAVGDDCNDS DEEVKRSKMQ ELSHTGSTGR GRGRGRGRGR GRGRPPLVRD
TYHQDAESEP CPSVQPSNQQ SAIPSVAVDS GSESKDIPKE ENVAAPVVSA DSLRNIDLNA ITNENDDKKA SVAEPPSTEG
KHEEILGWPL SDVDKMAIDS TQLAQLSRPL EEEEEDYDEE EG*