GBrowse Details

Vigan.05G190000.01

Basic Information:
Name: Vigan.05G190000.01
Multiple alignment
Variant Information
Position: Chr05:16780760..16784044 (- strand)
Length: 3285
Functional Information:
Description: Similar to Chaperonin-like RbcX protein isoform 1. [XP_007015059.1, Theobroma cacao]
InterPro: Chaperonin-like RbcX (IPR003435)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.26,0.79,28.51,213.76,1.14,11.04,0. 41,75.28
Arabidopsis thaliana homolog: AT5G19855.1
Automatic updates:
Name: NM_001249711 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100526969 (LOC100526969), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:16780760..16780988 (- strand)
Length: 229
Type: three_prime_UTR
Position: Chr05:16780989..16781111 (- strand)
Length: 123
Type: CDS
Position: Chr05:16781594..16781659 (- strand)
Length: 66
Type: CDS
Position: Chr05:16781792..16781849 (- strand)
Length: 58
Type: CDS
Position: Chr05:16782287..16782378 (- strand)
Length: 92
Type: CDS
Position: Chr05:16783344..16783670 (- strand)
Length: 327
Type: CDS
Position: Chr05:16783671..16784044 (- strand)
Length: 374
Type: five_prime_UTR

>Vigan.05G190000.01 class=Sequence position=Chr05:16780760..16784044 (- strand)
GAATCCTTCA CTTTTTTTCT TTTTTCTATT TTCTGTTGGA CAGTTTTGGA CCTCAAAAAT TTGTCTGGTG AAGGTTCGCT
CCCACCCTTC AAAAATCTCA CCTCTACAGT TTTAGTTTAC TTTTCCTTGC ACCCAAAAGC TTGCTACTTC TCTTGTTCAA
CCTTCCCACA AACACTGCAT GCGTCTTTGA CCACACCAAG TTCTTCAATT TCCAATTTTC CTGGTCACCC TCTATTCCTC
TTCCTCCCTA GCTGTACTTT CTGTTGAAGG GTATCTCTAT TTATAGAGTT CCATTGTCTT TTGAGGCAAT TTTGAACCTT
TGGTTTGTGT GTTCTTGAAG AGGTTTTCTG TGGAGATTGG AATAGTGAGA GAGGATGGTG GGTGCTCTGT CTGTTGTGGG
ATCATCAGTG GTGGAATCTC ACACTGGTCC TTGTTTGTGT GTGGATGCTC TTCCCACAAC AACTAGTGTC AATCTGAAGA
GTGGTGGAGA TGTTGTTCTG TGCAAGAATT TGATGGGAAG GAAGCACTTG ACGAAGCATG GTGGAGGAAC CATGAAATTG
AGCAGTTCTT TCATTGATCC TGGAAGAGAG TGGAGACTCT TTGTTAGCAG AAGTTGCAAG AGGCAGCGTA AGGATAGGAG
CGTCGCCATT GTCAACGAGC TTGGAGGCCA ATACGAAGAA GGTTTTGAAG ATGTTAAAAC GGTAACATGT TTGATATATG
CAAAAGAATA ACACAAACAC TTAGATCTGA TATTTTAATA TGTTTGGATC AAAGTTTAAG TTCCAATGAA TTTTCTTTAT
CAACTGAGTT TGCAGAAACA ATAAAATTGA AACTAAACTC GGTTTATAGT CAGAACTAAC TGAAAATCAT ACAACAGACT
TTTTTGTTTT ACTTTTTGAA TGGTTCTTAC TGAAAACTAA GCATGACCTA TTTAGTTTAA GTTTACTATA ACTCGGTTTC
TGCTTTAGCA TTGCTTTTTT TACCTTTTCT AATGAGTGTT TGCTTTATTG CATATTCTAA TTCTAATTTC TAATACATTC
TGAAGTTTAT ATTATAATGC AAAAAATGTC ATTTGTTAGA TGATTGTGAG TCTTAGCTTT CAATGGGAGT CCCAAGAAGC
TCTTAAACTA ATAACCTTCT GCACTATTCT ACCATGAAAT AAGAATGCAA AATTGTTTAT CTCATCGTGA AATGTGTTAA
GGAACAAGAG TTACCTGAAA GAGTAATATA TACATATATT GTGTTCAATA TAATAAAGAT TTCAAAGTAT ATATGTGGGA
AATGTGACAG GATCCTTCTG TTTTTCTTCA ATTTCAGTCT TTAGATGTAT ATGGTCATTT TTTCAAAACG CTGATCTGAA
CTTGTCTCCA TTACAAAGAT GAGAGCTGTT TCCTTTTGAT AAGTTATCAT TTTCTTCTAA TATATATCTC ATGGTGACAG
TGCAAATATC AAAGAAGAGC TCATACAAGT AGTACTACAA ATTACAAAAT GGCTTTTCAT TTTTCCATAA GAGGAAGATA
GTTTTCACTC ATTATGAGTG TTTTATATTC AATGAGATTA TGTTTTTTTA TTACGTTTCT ACCTTTTGAT CATCACCAAT
CTGTCTGCTA TGATACAAAA ACACTAAACG TTGTATGCGA TCTAACTGAT GCATCATTGG AAACAGCAAA TGCTCAACTA
TTTCACATAC AAGGCTGTGA GGACTGTTCT TCATCAGTTG TATGAGATGA ACCCTCCTAA ATATACGTGG TTCTACAAGT
AAGTCAAGTT TCTATTAATT CGAGGAAACA TGTTTCAACC AAGATTTACA TTGCAATGTG ATTATTGTAG TTCGAAATGT
GCTTTTGGTT TTGTTTTCAA GATGTGAACC AAGTGGTGAG GATAAAATTG TTAGTTTTAT TATATCCTTT GCAAATTCTT
GAAAACATGA CAGAATAAAA CAGTGTGATA GTTTTCAATT ATTAGTGAAA ACATGGGAAC TGAAAATAAA AACAAACTGA
ATGGACCCTG AATCTGCTGT GTACATAACA TGAATTCATT GAATATTTCT TCCCCTTCAA ACATGCTAGG AAATAATGAT
TGTTGAAGGA ATAGAGCAAT TTAAGAAGGT TCAGAGTGAT TATTAAAGTA GAATATGGTG ATTCACAGCT ACCTCATAAT
TATTTAGATG TTTGCAATGC TTTCTTTGTT CACAGTTTTG TTGCATCAAA CAAACCAAGA GATGGAAAAC GCTTTATTCG
ATCCCTTGGG AAGGTAATCT TTTGTGCCAA GCTAGTTGGT TCATTCTTTG GAAATTTTCA AATAAAGATA TATGGTATGT
TGTTGGAATT CCTACGTGGA GTAGAGATAA ACATCAAAAT TAATTGATTA ATTTTCAATT CATAGGAGCA ACAAGAGCTT
GCGGAAAGAG TGATGCTAAC TCGGCTTCAC CTTTATAGTA AATGGGTCAA GGTAATAGAA TTGAATACTC TCTTTCTCAA
TGTGTGTGGC TTTAAAGTGA CAGACATTTG ACATTCACTT GAGAAAAATT GAGAAAAATA ATTTTTTGAC ACACTTAAAT
TTTTTACATT CATTTGATAT TATCCTTTTC TACTTTTTAC TCTTTTCTTT CTTGAAAAAA TAAAAAAAAA TTATACTTTT
ATAACCATTT TATCCTTATA TTCGATGTCA AATGAATGTA AAAAATTTAT GTGTTAAAGT ATATTTTTCA TCTATAAAAG
TGAAGAAATA ATGTCATGAC ACACTTTTAC ATTCATTTGA CACATGATAC ATGGATAAAA TGGTCTAAAA AGTGTAAAGT
TTTTAAGTTT TTCAAGAAAG AAGAGAATAA AAAATAAGTA AGGGTAATGT CAAATGAATG TAAAAAATGT AGATGTGTCA
AATAATATTT TTCAGGTATG ATGTAGTTAA CTTTAGAAGC ATTGTTTGTG CAGAAATGTG ACCATGCAGA GATATACAAG
GAAATCTCTG ATGAAAACTT GGAGTTAATG AGGGAACGGC TGATGGAGAC AGTAATATGG CCCTCAGATG ACACAAACAG
TGAAAAAATT GGCTGATAAT TCTTCTCACT TTTTAGTTTC TGTCTTGAGC CTCTTCCTAG TCTAGGTATA TTTTTTTGTT
TCAACATCAA TCTGTTTTGC TTCCAAAATT GTTATTTCTG TCGTTTTCCT TTAATAGGAT TCTCAGTTTT ACGTTATGTA
AATTATGTAT ATAATTGCAC CTCGTTAAAT ACACAGTCCA TTATATATCG GTAGTTTCAA ATGAATTTGC AAGTGTATGA
AAATT

>Vigan.05G190000.01
GAATCCTTCA CTTTTTTTCT TTTTTCTATT TTCTGTTGGA CAGTTTTGGA CCTCAAAAAT TTGTCTGGTG AAGGTTCGCT
CCCACCCTTC AAAAATCTCA CCTCTACAGT TTTAGTTTAC TTTTCCTTGC ACCCAAAAGC TTGCTACTTC TCTTGTTCAA
CCTTCCCACA AACACTGCAT GCGTCTTTGA CCACACCAAG TTCTTCAATT TCCAATTTTC CTGGTCACCC TCTATTCCTC
TTCCTCCCTA GCTGTACTTT CTGTTGAAGG GTATCTCTAT TTATAGAGTT CCATTGTCTT TTGAGGCAAT TTTGAACCTT
TGGTTTGTGT GTTCTTGAAG AGGTTTTCTG TGGAGATTGG AATAGTGAGA GAGGATGGTG GGTGCTCTGT CTGTTGTGGG
ATCATCAGTG GTGGAATCTC ACACTGGTCC TTGTTTGTGT GTGGATGCTC TTCCCACAAC AACTAGTGTC AATCTGAAGA
GTGGTGGAGA TGTTGTTCTG TGCAAGAATT TGATGGGAAG GAAGCACTTG ACGAAGCATG GTGGAGGAAC CATGAAATTG
AGCAGTTCTT TCATTGATCC TGGAAGAGAG TGGAGACTCT TTGTTAGCAG AAGTTGCAAG AGGCAGCGTA AGGATAGGAG
CGTCGCCATT GTCAACGAGC TTGGAGGCCA ATACGAAGAA GGTTTTGAAG ATGTTAAAAC GCAAATGCTC AACTATTTCA
CATACAAGGC TGTGAGGACT GTTCTTCATC AGTTGTATGA GATGAACCCT CCTAAATATA CGTGGTTCTA CAATTTTGTT
GCATCAAACA AACCAAGAGA TGGAAAACGC TTTATTCGAT CCCTTGGGAA GGAGCAACAA GAGCTTGCGG AAAGAGTGAT
GCTAACTCGG CTTCACCTTT ATAGTAAATG GGTCAAGAAA TGTGACCATG CAGAGATATA CAAGGAAATC TCTGATGAAA
ACTTGGAGTT AATGAGGGAA CGGCTGATGG AGACAGTAAT ATGGCCCTCA GATGACACAA ACAGTGAAAA AATTGGCTGA
TAATTCTTCT CACTTTTTAG TTTCTGTCTT GAGCCTCTTC CTAGTCTAGG TATATTTTTT TGTTTCAACA TCAATCTGTT
TTGCTTCCAA AATTGTTATT TCTGTCGTTT TCCTTTAATA GGATTCTCAG TTTTACGTTA TGTAAATTAT GTATATAATT
GCACCTCGTT AAATACACAG TCCATTATAT ATCGGTAGTT TCAAATGAAT TTGCAAGTGT ATGAAAATT

>Vigan.05G190000.01
ATGGTGGGTG CTCTGTCTGT TGTGGGATCA TCAGTGGTGG AATCTCACAC TGGTCCTTGT TTGTGTGTGG ATGCTCTTCC
CACAACAACT AGTGTCAATC TGAAGAGTGG TGGAGATGTT GTTCTGTGCA AGAATTTGAT GGGAAGGAAG CACTTGACGA
AGCATGGTGG AGGAACCATG AAATTGAGCA GTTCTTTCAT TGATCCTGGA AGAGAGTGGA GACTCTTTGT TAGCAGAAGT
TGCAAGAGGC AGCGTAAGGA TAGGAGCGTC GCCATTGTCA ACGAGCTTGG AGGCCAATAC GAAGAAGGTT TTGAAGATGT
TAAAACGCAA ATGCTCAACT ATTTCACATA CAAGGCTGTG AGGACTGTTC TTCATCAGTT GTATGAGATG AACCCTCCTA
AATATACGTG GTTCTACAAT TTTGTTGCAT CAAACAAACC AAGAGATGGA AAACGCTTTA TTCGATCCCT TGGGAAGGAG
CAACAAGAGC TTGCGGAAAG AGTGATGCTA ACTCGGCTTC ACCTTTATAG TAAATGGGTC AAGAAATGTG ACCATGCAGA
GATATACAAG GAAATCTCTG ATGAAAACTT GGAGTTAATG AGGGAACGGC TGATGGAGAC AGTAATATGG CCCTCAGATG
ACACAAACAG TGAAAAAATT GGCTGA

>Vigan.05G190000.01
MVGALSVVGS SVVESHTGPC LCVDALPTTT SVNLKSGGDV VLCKNLMGRK HLTKHGGGTM KLSSSFIDPG REWRLFVSRS
CKRQRKDRSV AIVNELGGQY EEGFEDVKTQ MLNYFTYKAV RTVLHQLYEM NPPKYTWFYN FVASNKPRDG KRFIRSLGKE
QQELAERVML TRLHLYSKWV KKCDHAEIYK EISDENLELM RERLMETVIW PSDDTNSEKI G*