GBrowse Details

Vigan.05G181900.01

Basic Information:
Name: Vigan.05G181900.01
Multiple alignment
Variant Information
Position: Chr05:15658751..15664997 (- strand)
Length: 6247
Functional Information:
Description: Similar to HSP20-like chaperones superfamily protein. [XP_007016106.1, Theobroma cacao]
InterPro: CS domain (IPR007052)
HSP20-like chaperone (IPR008978)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:114.33,49.64,41.52,45.82,40.47,69.22 ,41.86,44.25
Arabidopsis thaliana homolog: AT5G58740.1
Automatic updates:
Name: NM_001249590 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306544 (LOC100306544), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:15658751..15659139 (- strand)
Length: 389
Type: three_prime_UTR
Position: Chr05:15659140..15659226 (- strand)
Length: 87
Type: CDS
Position: Chr05:15663256..15663398 (- strand)
Length: 143
Type: CDS
Position: Chr05:15664391..15664439 (- strand)
Length: 49
Type: CDS
Position: Chr05:15664544..15664692 (- strand)
Length: 149
Type: CDS
Position: Chr05:15664790..15664838 (- strand)
Length: 49
Type: CDS
Position: Chr05:15664839..15664997 (- strand)
Length: 159
Type: five_prime_UTR

>Vigan.05G181900.01 class=Sequence position=Chr05:15658751..15664997 (- strand)
TAATGTATCT CTTTGATCAG AGATTATAAA CTGCAGATTT TACAGTTCCC AAAAATAATA GCAAAGGAAA CAGCGCGAAC
AAAGGAGAAA GCAGAATAAC TGAATAAGAA TCAGAAGAAA GAAGAAAAAG AAAGAGTGTA GAAAACCCTA GAACGTCAAA
TGGCGGAAAA ATTAGCCCCC GAAAAACGTC ACAGCTTTAT CCACAACGGT ACTTTTTAAT TTCTCCATGT TTGTTCTATT
CTGTTGTGAT TTTTCGTCAA TTGAATCCGA ATTAAACAAG CCTGTGTGTG CGCGTGTGAT TCCAGGTGAA AAGGTGTTCG
AGTGGGATCA AACCCTCGAC GAGGTCAATA TTTACATAAA TCTTCCTCCC AACGTCCATT CCAAGCAATT CTACTGTAAG
ATTCAGTCCA AGCACCTCGA ACTTGGCATC AAAGGCAATC CCCCCTATCT CAACGTAAGT ATAATTCTCC TCCTCTTCAT
ATCCTTTCTC AATTTTGTTG TTGCTTTTTT ATTTTATTTT ATTTTTTTCC CCTTATTTAT CTGTGTGTTA TTTCTCAGCA
TGATCTCCCT TGCCCGGTGA AGACAGATTC TTCTTTTTGG ACCCTAGGTA AAGGTTTAAT CAATCCCTAA TTTTTTCCCC
TTCGCCCCAA ATTGATTTGT AGATATAATT TTTTGTTTAA TCATACATGC ACTTACGGTG TAAAAGTCAG TGTTGTTTAT
TGTGATCTAA TCAGAAATAC GATGAAGCCC AGATACTTAG TATGACATGG GTACAATACC ACACGGAATA CGACATGATA
TGTTAAAAAA TTATAAAATA TTTTATATAG ATGTAGAATA ATGATAGTTA AAGAGACATT GATCCTTTTT TATTAATTCA
GAACTATGAT GATCACAATT TACTAAAATA CATCTGTCAT AGTAACGAAA AAGTATAGCT TTTTCTGTAC CATAGCTAAG
CGGATGAACA AAAACATCTA TTGTAGAACT AAAGGTAAAT ATCGACTCTA CACAATAGCT TACAATTCAG AAGCATTGCT
AAATTTAAAT TTCTATCTAA TGTTAATTGT ATGACTCTTC TCTCCTCTGT TTATATCATC GAGAAAAGGC ATAACTTTTA
GGCCAATTTC TCTTATAACA TGACGAAGGA TATGATTGTT CAAGAAGCTT TAGACAAACT TTTTCCAATA CTATTGGGAA
TTATCCAAAT CATAATCTTA AAAGAATCAA ATGAAAAGGA ATTGGATACT TTTTGGATAA TACACCTAAA AGTATCCCAG
AAGTGTCTTA GAAAAGAATT ATAAAATTAA ATAAAAAAGT TGGATACTTT TTGTATACGT ATTTGGAAGC ATCTGAGGAG
TATAAGTCTT TGACATGTGC TACACGATAC ACTCCCATCT CTGAAGTATC GAGTCTCCAT AGAAGAAATA GATATCTGTT
ATAAATTTAT TGATTTTCAT AATAATCTTT TAAGTTCTTG AAATAAGTGT TTGGCTTTGG AATGCAACTA GGAAGATTTT
TTCTTTCAAA ATCAGTGATG AAATAAGTGT GATTTGGTTA AGTTTGTTGG TGATGCTGAT TTTGGAGTTC GACTTGCAGA
GGATGATATA ATGCATATAA CACTGCAGAA GAGAGATAAA GGCCAGACAT GGGCTTCTCC AATATTAGGT CAGGGTCAGT
TGGACCCTTA CTCTACTGAT CTTGAACAGA AGCGTCTCAT GCTTCAGAGA TTTCAAGAGG AGGTAAGTTT TGCTTTCATC
ACAATCCTTT TCCAGGTGTT TCAATTTGGA ATTCATTTGC ATCAATCCCA TGACGTGTAG CATGTGCTTC TTAGTGTCCT
TTGTTGTTAT GGTCTGAAAT TTTAGTAATT CATTTTCAGT CTTCTACATG AAAAATTATA CTATGACATT ATTCTCTTAT
TCCTTGCAAT TCATCTTTAG CTCTCATTTT TTGTTTGTGT GTGTTTGAAG AGAGGTTCGT TCTTTTATCA TGATAATAGC
TCACTCTACT GCATTTGCCC AAGGGTTGGG AGATGGTAGT TTAAAATCAT GCAATTGTTT TTGTGAAAGC ATTCAAAGCA
CTTTTTATGG CAGTACCTTA AGGCTTCAGC TGTGTAACAT TGCATGGTCA AGTGTTTTTC CAGTTTTTAC TTAATGAGGA
AGTTTATAAT TGATTAATTT GGGTCTCAAA TACATGGGGA TATGTTATGA TTATTTGCTC TTTATGTTAT TAATTATGGC
TTAATTAGTA AAATTTGGTT CCTATATTTA GGTCTTTGAT TCATTTTGAT CTTTATAATT TTTTTTAATT GAGTCCCTAT
TTTTAAAAAT ATACTCAATA TAGTTCCTTT CGTTAGATTT GGCATTAACC CTATTCGGAG GGTGTTATTG TCAAAATGTG
GATCATCTTC TTCCTTGGAA TGCCGTTGCT ATTTTTTTGT TTTTTTTTTC TCCCTCCACC TCCCTCCAAG TTGTTTGAGG
TTTTGAATTC AATTACAAGT TGTTGAATTC AATAATTTGG GGCTTTTCTG ATTTAGGGTT TAGGTTGACT AACCTTTCCT
TTGGGAGGTG GAGGGAGGTG GAGAAAGAAA AAAAAAACAA AGGGATTTCT AGGTAGAAGA TGATCCTGAT TTAACATGTG
ACACATTCCA AATGACATTA ATGTCAATTA AACGGAAGGG GTCATGTGAT GAATGTTTTC ACTCTAATAA ACAGGAAGAA
GCTCAACAGA CACTTTGAAA TAAGGTATGA TAAACGGCGT TCCCCAAATA TATTTATCTA TATATTCCAT ATCATCTACA
AGCTAAAAAA TCTAAAATCT ATACAAGCAT ATGAGTTGGA AAAATTCTCA AAAGAAACGC AACTTTTCTA AATGTTTTTA
TTGTTTCATC CTCACTGTTA ACAAAAAGTC GTGTTTCTTT TGAGGATCTT TTTTGTAAAT TTGAGGAACA TAATAAAGAT
GATGATGATA TTGAAATTGA AATTTTTGCT AGATTGTACA TATTACTTGG ATTAGCCAAG TTTTATTTTT CTACTCATGC
TTATATAGGT TTTAAATTTT TTAAGCTTGT AGATAATTTA AAAGATATGG ATAATTGGGG TATGACGATT TATCATACCT
TATTTCAAAG TATATGTCGA GCTTCTTTTG GTTTATTAAA GCGAAAAAAT TCATCTTGTG GCACCTTCGG TTAAATTGAC
ATTAACCTTA TTTGGAAGGT GTCACATCAT CATGTCAATT TCATTTAAAA AAATAGGAGA CCGTATTGAA TCTTTTTTAA
AAAGTAAGGA TTGAGTGAAA AAATATAGGG AATAAAACGA AACAAAGACC TAATTACAGG GATCTAGTTA CTAAATAAGC
CTATTGATTA TTATTGGCAT ATAAGCCTTA TTCCTGAGTA TTTAACCCGT GCCATTCCAA CCTTTATCCA TACCATTTTA
AGATAAAAAA AAAACTACTT TTAATACTAT TTTTAATATA GTTGTGTTGC CCTCAAGTTT TGGTACTGTT CACGTATCAA
AGCACCAAAA CTTCAATCAT TGTCAAAGTT TATTGTTTCT CTGTATTGGA TACATAAAGT ATTACTTTTA TACAATAGCT
AATTGCCTAA CTACTAATAT TAAGAAGCAA TCATCAACAT GGATTCTAGG ATATTAATTC TAATTATTTG ATGTCACTTG
TGTATACTTA AAAATCCTGT GTATTCTACA CTTTAAAAAA ATAATGAATT TTATTATGTT TGTTTCTTTT CCTACTAGTT
AATGGGCTAT TATTATTGCC TTCATATTCA TCTGTTGGGT TTACCCATCT AGCTGTTAGG TTGGATTCCA CTATTTCCAA
AGTGTGTTCT TTGGTTGATA CTTTTTTTGG CCTAAGTAGT GTATAACATT GAGAAGAGGA TCTGATAATT AGCAGGTATT
ATTCATTTCT TCGTACTAAT TTGTGGGTAT CTAATGTGGA TAAAATTGAT GTTAAGATGA AAATTGTAGT TTTTAAGATT
GCTGACTACC AACACTTGAT ACTTTATTTC TAGATGATAA GCTCCCATTT TAGTGTTTGT TTATCCTCTC CAACAAATGT
CAATGAGTTC ACCTATAAAT AAACATACAT TAGACTTTTT CAACGATATT CTTGAACTTG GAAGATAATT TCATTTTTTG
GTGCATCTGC TTAGATCTCG TGCGTACATG ATATTTAAGA TATTTTGAAG TTTCTTGCTA GAGTGTATCC AGAACTCTGA
ATCAAGATTT TACCTTTTTT TTGGCCAACA TGGATTATTC TGGTCTGAAT TGATTGTGTT GAATTTTGAC ACTCCCCCTA
AACAAAAATG GAAATAAGTA TAATGAATTA AAGTTCAATC AACTTGTGCA CTTCAACTTT TATAGAAGTT CTCTCATCTA
ATGTTGCATA AAATTGTTGC ACATAAGCTG ATTTTAATTT TTTGAAGAAG TTTGATTTAT TTTACATTTC TATTTTCTAA
GTGCTTCCCA AAGTCATGGC TTCTAGCTAG TGCTAGTAGC TTCATTACTC TATCCTTCCA ACCCCATCCC TCCTCCTTTA
ATATATGTTA TTGCCATAAC TTATGTAGAA TACTACTCTG TCATCAGATG CAGATTATCC TATCATAACG GAATACATCT
TTTCCCTCTG TACGAATGTT CAAAAATCTG AATCAAACTG AATTGTTTGA AAACTGAACC AAACTGGAAA ACCAGTTTAA
TTAAACTGAA ATATTAAATG GTTTGCGCAA ATGAAATTCA ATGTTTTAAC TGTTTTCTCA AATTTGAACT GTTTTTATGG
TTCGGTTATG TTCAGTGTAA TTATAAATTC AGTTAATTTC AGTTTCTTTA TTAAAAAACA GTTCAGTTTT TAAATTTTAG
TTGGGTTTGG TTCTTATTAG AAGGTGTGTT TAAGCCTAAC TCAACCCCAC AAAACCGGCT TGTAAGGTGA GGTTTGCACC
TCACTTATAT ATTATATTTT GGCCTTATCT CTAGTCAATG TGAGACTTCC AACACATCCC CTCACGCTGA GGTATAGACA
TCTCATACGT GATAGTAGAA ATTGGGTGGT CCAATAACAG CCCGATAGCG GGTGGAATAG AAGAATAGAA TGTCACTTAG
AACTCGCTAG GAAAGGCTCT AACCATGGCT CTGATACCAT ATTAGAAGGT GGGTTTAAGC CTAACTCAAC CCCACAAAAC
CGGCTTGTAA GGTGAGGTTT GCACCTCACT TATATATTAT ATTTTGGCCT TATCTCTAGT CGATGTGGGA CTTCCAACAG
TTCTTAACTG TTTTTTTTTT TTTTCTGAAA CCGCTTCCTG GCTTAGTAGA ACTCACAGAC ATTTTCTATA TAAATACAAT
AGAATTCGCA GAATTCATCG ACATAGTCAA TAAGATAAGG TTTTTCCACT TATTCTGAAA TATCTCGTAG TGCCTGTGGC
AGTTAGTCCA TTGCTGATTC CTGAATTTCT GCATCTTGGA CAGACATAAA GTGATTTAAA AATTAACTTG ATGATTATTA
AATTGCCATT TGGTAAGGTT CAAGAACTGT CTGTTGCACC AGTTAAAGAT TGTGTTACAC TATTGTAGCC TTAGCCATTA
ATAACATTAT TTGATTTAGT TTATAGTGGA ACAATCTTTC TGCTCAAAGC ACCGTTCCTT ATGGTTTAAT GTTGTTGTTT
GTGTGGAACC CAGATTTTAA TAGTTCAGAT TATGATGATC TTATTGCCTT ATTCAAACCA CTACTCATGA TTCTGTTGTG
CCCTCCTGCA GAATCCAGGT TTTGATTTTT CACAAGCTCA ATTTTCTGGA AACTGTCCTG ATCCAAGGAC CTTCATGGGT
GGAATCCGAT CAGATTGATG ATCTTAGATG CTGTTATGTG TATTTGTCTG CTCTAATATG ATGATCAGAT GGTAATAATA
TGTGATATTT GTCTCCTCAT TTGATGTCTT GCAATTGAGG CAGTCTTGAT TGACTTCCTC TAATGAATGA TGACTAAACT
GTATTGAGTC GTGGTGACTC TTGGGCATAT AAGCATGTAT ATAAAACATG GAGCAATTCT ATAACTGAAG GTATTTTAAA
GTCTTCTGTG GATCACCAAA CCATTGAGGA AGAGTTGGTA GCCATATAAA GTATCAACTT TTAGATTCGA TAATACACAA
AATTGATTCT ACCTTACAAA AATCATATAG ATTCTACGAA ATAATTATTT GTTGGTTTCA CTTTTACTGT TAAATGAGGT
GAAAAAT

>Vigan.05G181900.01
TAATGTATCT CTTTGATCAG AGATTATAAA CTGCAGATTT TACAGTTCCC AAAAATAATA GCAAAGGAAA CAGCGCGAAC
AAAGGAGAAA GCAGAATAAC TGAATAAGAA TCAGAAGAAA GAAGAAAAAG AAAGAGTGTA GAAAACCCTA GAACGTCAAA
TGGCGGAAAA ATTAGCCCCC GAAAAACGTC ACAGCTTTAT CCACAACGGT GAAAAGGTGT TCGAGTGGGA TCAAACCCTC
GACGAGGTCA ATATTTACAT AAATCTTCCT CCCAACGTCC ATTCCAAGCA ATTCTACTGT AAGATTCAGT CCAAGCACCT
CGAACTTGGC ATCAAAGGCA ATCCCCCCTA TCTCAACCAT GATCTCCCTT GCCCGGTGAA GACAGATTCT TCTTTTTGGA
CCCTAGAGGA TGATATAATG CATATAACAC TGCAGAAGAG AGATAAAGGC CAGACATGGG CTTCTCCAAT ATTAGGTCAG
GGTCAGTTGG ACCCTTACTC TACTGATCTT GAACAGAAGC GTCTCATGCT TCAGAGATTT CAAGAGGAGA ATCCAGGTTT
TGATTTTTCA CAAGCTCAAT TTTCTGGAAA CTGTCCTGAT CCAAGGACCT TCATGGGTGG AATCCGATCA GATTGATGAT
CTTAGATGCT GTTATGTGTA TTTGTCTGCT CTAATATGAT GATCAGATGG TAATAATATG TGATATTTGT CTCCTCATTT
GATGTCTTGC AATTGAGGCA GTCTTGATTG ACTTCCTCTA ATGAATGATG ACTAAACTGT ATTGAGTCGT GGTGACTCTT
GGGCATATAA GCATGTATAT AAAACATGGA GCAATTCTAT AACTGAAGGT ATTTTAAAGT CTTCTGTGGA TCACCAAACC
ATTGAGGAAG AGTTGGTAGC CATATAAAGT ATCAACTTTT AGATTCGATA ATACACAAAA TTGATTCTAC CTTACAAAAA
TCATATAGAT TCTACGAAAT AATTATTTGT TGGTTTCACT TTTACTGTTA AATGAGGTGA AAAAT

>Vigan.05G181900.01
ATGGCGGAAA AATTAGCCCC CGAAAAACGT CACAGCTTTA TCCACAACGG TGAAAAGGTG TTCGAGTGGG ATCAAACCCT
CGACGAGGTC AATATTTACA TAAATCTTCC TCCCAACGTC CATTCCAAGC AATTCTACTG TAAGATTCAG TCCAAGCACC
TCGAACTTGG CATCAAAGGC AATCCCCCCT ATCTCAACCA TGATCTCCCT TGCCCGGTGA AGACAGATTC TTCTTTTTGG
ACCCTAGAGG ATGATATAAT GCATATAACA CTGCAGAAGA GAGATAAAGG CCAGACATGG GCTTCTCCAA TATTAGGTCA
GGGTCAGTTG GACCCTTACT CTACTGATCT TGAACAGAAG CGTCTCATGC TTCAGAGATT TCAAGAGGAG AATCCAGGTT
TTGATTTTTC ACAAGCTCAA TTTTCTGGAA ACTGTCCTGA TCCAAGGACC TTCATGGGTG GAATCCGATC AGATTGA

>Vigan.05G181900.01
MAEKLAPEKR HSFIHNGEKV FEWDQTLDEV NIYINLPPNV HSKQFYCKIQ SKHLELGIKG NPPYLNHDLP CPVKTDSSFW
TLEDDIMHIT LQKRDKGQTW ASPILGQGQL DPYSTDLEQK RLMLQRFQEE NPGFDFSQAQ FSGNCPDPRT FMGGIRSD*