GBrowse Details

Vigan.05G180600.01

Basic Information:
Name: Vigan.05G180600.01
Multiple alignment
Variant Information
Position: Chr05:15512455..15514831 (+ strand)
Length: 2377
Functional Information:
Description: Similar to Omega-3 fatty acid desaturase, endoplasmic reticulum. [P32291, Vigna radiata var. radiata]
GO: Biological Process: lipid metabolic process (GO:0006629)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water (GO:0016717)
InterPro: Fatty acid desaturase, type 1 (IPR005804)
Protein of unknown function DUF3474 (IPR021863)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.58,4.13,66.05,48.32,3.33,24.44,1.2 4,27.23
Arabidopsis thaliana homolog: AT2G29980.1, AT3G11170.1, AT5G05580.1
Automatic updates:
Name: NM_001249746 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max omega-3 fatty acid desaturase D (FAD3-2b), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249746 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max microsomal omega-3 fatty acid desaturase (FAD3-2b), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250014 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max microsomal omega-3 fatty acid desaturase (LOC547470), mRNA.
PubMed ID: 21117867 NCBI(pubmed)
18256901 NCBI(pubmed)
Status: Known Variant
Name: NM_001250014 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max microsomal omega-3 fatty acid desaturase (FAD3.4), mRNA.
PubMed ID: 21117867 NCBI(pubmed)
18256901 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:15512455..15512511 (+ strand)
Length: 57
Type: five_prime_UTR
Position: Chr05:15512512..15512807 (+ strand)
Length: 296
Type: CDS
Position: Chr05:15512910..15512999 (+ strand)
Length: 90
Type: CDS
Position: Chr05:15513114..15513180 (+ strand)
Length: 67
Type: CDS
Position: Chr05:15513344..15513436 (+ strand)
Length: 93
Type: CDS
Position: Chr05:15513549..15513734 (+ strand)
Length: 186
Type: CDS
Position: Chr05:15513813..15513893 (+ strand)
Length: 81
Type: CDS
Position: Chr05:15514135..15514272 (+ strand)
Length: 138
Type: CDS
Position: Chr05:15514413..15514604 (+ strand)
Length: 192
Type: CDS
Position: Chr05:15514605..15514831 (+ strand)
Length: 227
Type: three_prime_UTR

>Vigan.05G180600.01 class=Sequence position=Chr05:15512455..15514831 (+ strand)
TATAAATGAT CCCTCTCCAA AGAAACATTG TAACAGAGAA AGAACCATCG AGAAAAAATG GTTCAAGCTC AAACTCTGCA
GCATTTTGGT AATGGGGCAA GGGAAGGAGA TCAAACTTAT TTTGATCCAG GTGCTCCACC ACCCTTTAAG ATTGCAGATA
TCAGAGCAGC AATTCCCAAG CATTGCTGGG AGAAAAGCAC ACTGAGATCT CTCAGTTATG TTCTCAGGGA TGTCTCAATG
GTCACAGCAT TGGCGGCTGC AGCAATTGCC TTCAATAGCT GGTTCTTCTG GCCACTCTAT TGGCCTGCAC AAGGCACAAT
GTTTTGGGCC CTGTTTGTTC TTGGACATGA TTGGTATCTC AATAAGAATT GATTATGTTA TTTCACTTAG TTTTGCGTGA
TTATAATCCA TGTTTTTCAT CTTGGTGAGT TCTAATTTGT TGATGCTTTG AACAGCGGGC ATGGAAGTTT TTCAAACAGT
TCCAAGTTGA ATAGCTTTGT GGGCCACATC TTGCACTCCT TGATCCTTGT ACCATACAAT GGATGGTCGG TTCCTTTTAG
CAACTTTTCT TGTTCACATT GTCCTTGAAT TTCTTTTGTT TCCTAAATCT TTATTCTGAT TTGACAACCT AACCATTTCA
CAACTCATGG ATTCTGCAGG AGAATCAGCC ACAGGACTCA CCACCAAAAC CACGGCCATG TTGAGAACGA TGAATCCTGG
GTTCCGGTAT GAGTTTCCTT AGTTTCCACT TTTTTCTCTT TTCTCAGTAT CCATCAATGA TTAGATTTGT TGGTTCGATA
CAAGAAGAGG AGGAAGAGGA AAAATCTAGG TATTTGAATG AACTTCATGA GGCAGTTCAT GATTGTTGTG TCTTTTTGAT
TTACCTCAGT TAACGGAGAA AGTTTACAAG AATCTAGACA ACATGACAAG AATGCTGAGA TACTCTTTTC CTTTTCCAAT
CTTTGCATAT CCCTTTTATT TGGTGAGAGC ATTATTTTAT TCTAGTTTTT AATTCCTGTT ATTCCTGATA TATCTTACCT
TAAACTCTGA ATTCTCCATC TCTCACTCTC ATTCTGATAT GAACCATATT TCAGTGGAAC AGAAGCCCAG GGAAAGAAGG
TTCTCATTTC AACCCTTACA GCAACTTGTT CTCCTCTGGT GAGAGAAAAG GCGTGGTAAC TTCGACCCTG TGTTGGGGCA
TCGTGCTTTC TCTGCTTCTC TATCTTTCCC TAACAATAGG TCCAATTTTC ATGCTCAAGC TCTATGGGGT ACCCTATTTG
GTAATCTATC TCTGTCACAC TCTTCACTAT TAATTGGTTA ACTCATTTCC AACCATTTAC TTACTTCAAC TTGTGTAGAT
CTTCGTCATG TGGCTGGATT TCGTCACCTA CTTGCACCAT CATGGTTACA CGCATAAACT ACCTTGGTAC CGGGGCCAGG
TATCATCCTT AAACATCATT TATCTCATTA ATATTTCAAG ACAATTACAA AAGTAACTAC CTTTCAATTT ATTAGATTTA
TGACCACCTT TCTTTGACTA TTTTCACTAT TTTCACCCAC TTTGGTCCAA TTTGTCACAT GGTCATTTAA ACAATCAACA
TATTTATGTG CAATTTTGCC ATTCTTGAAA AGAAGATATT ACATCATCCA TCATGTTACT CTGTCTGTGT AATTTCACAG
GAATGGAGCT ATCTAAGGGG TGGTCTTACA ACAGTAGATC GTGACTATGG TTGGATTAAC AACGTTCACC ATGACATTGG
CACTCATGTT ATCCATCACC TTTTCCCTCA AATTCCACAT TACCATTTGG TGGAAGCGGT ATTCTCTTCT TTCTCCACAG
ATCATTATAC AGATCAAAAG TAGTATCAGT TAAATAATCA CAATAATATT TTCCTTTTTT TCTATGGTTC TGATATGCCC
TTTTCTTCCT TTTTTTTTCT ATTGTTTTGG CACCACAGAC TAAATCAGCA AAATCAGTGC TTGGAAAGTA TTATCGTGAG
CCTCAGAAAT CTGGGCCATT GCCATTTCAT CTATTGAAGT ACTTGCTACA AAGCATAAGT CAGGATCACT TCGTTAGCGA
CACTGGGGAC ATTGTGTACT ATCAGACTGA TCCCAAGCTC CACCAAGATT CTTGGACCAA GTCCAAGTAA AAAAGTTTTG
ATGCTACCAA ATTGACCTAT TTCTCCCTAA AATATTTCCT ATGTAACTAA GAACATATAT GTGCTACCTA CTCAAATCAA
TTGTTAGGTA ACATGTATAA GCTTTCATAA ACCATACATG CTAGAAAGCA CTTACTTTGA AAAGCATGAT ATGTTAGAAA
TGAATCTGTT TCTCAACACC CTGATCAATT AATATACTTC AATAAGCGTT TCTGTTA

>Vigan.05G180600.01
TATAAATGAT CCCTCTCCAA AGAAACATTG TAACAGAGAA AGAACCATCG AGAAAAAATG GTTCAAGCTC AAACTCTGCA
GCATTTTGGT AATGGGGCAA GGGAAGGAGA TCAAACTTAT TTTGATCCAG GTGCTCCACC ACCCTTTAAG ATTGCAGATA
TCAGAGCAGC AATTCCCAAG CATTGCTGGG AGAAAAGCAC ACTGAGATCT CTCAGTTATG TTCTCAGGGA TGTCTCAATG
GTCACAGCAT TGGCGGCTGC AGCAATTGCC TTCAATAGCT GGTTCTTCTG GCCACTCTAT TGGCCTGCAC AAGGCACAAT
GTTTTGGGCC CTGTTTGTTC TTGGACATGA TTGCGGGCAT GGAAGTTTTT CAAACAGTTC CAAGTTGAAT AGCTTTGTGG
GCCACATCTT GCACTCCTTG ATCCTTGTAC CATACAATGG ATGGAGAATC AGCCACAGGA CTCACCACCA AAACCACGGC
CATGTTGAGA ACGATGAATC CTGGGTTCCG TTAACGGAGA AAGTTTACAA GAATCTAGAC AACATGACAA GAATGCTGAG
ATACTCTTTT CCTTTTCCAA TCTTTGCATA TCCCTTTTAT TTGTGGAACA GAAGCCCAGG GAAAGAAGGT TCTCATTTCA
ACCCTTACAG CAACTTGTTC TCCTCTGGTG AGAGAAAAGG CGTGGTAACT TCGACCCTGT GTTGGGGCAT CGTGCTTTCT
CTGCTTCTCT ATCTTTCCCT AACAATAGGT CCAATTTTCA TGCTCAAGCT CTATGGGGTA CCCTATTTGA TCTTCGTCAT
GTGGCTGGAT TTCGTCACCT ACTTGCACCA TCATGGTTAC ACGCATAAAC TACCTTGGTA CCGGGGCCAG GAATGGAGCT
ATCTAAGGGG TGGTCTTACA ACAGTAGATC GTGACTATGG TTGGATTAAC AACGTTCACC ATGACATTGG CACTCATGTT
ATCCATCACC TTTTCCCTCA AATTCCACAT TACCATTTGG TGGAAGCGAC TAAATCAGCA AAATCAGTGC TTGGAAAGTA
TTATCGTGAG CCTCAGAAAT CTGGGCCATT GCCATTTCAT CTATTGAAGT ACTTGCTACA AAGCATAAGT CAGGATCACT
TCGTTAGCGA CACTGGGGAC ATTGTGTACT ATCAGACTGA TCCCAAGCTC CACCAAGATT CTTGGACCAA GTCCAAGTAA
AAAAGTTTTG ATGCTACCAA ATTGACCTAT TTCTCCCTAA AATATTTCCT ATGTAACTAA GAACATATAT GTGCTACCTA
CTCAAATCAA TTGTTAGGTA ACATGTATAA GCTTTCATAA ACCATACATG CTAGAAAGCA CTTACTTTGA AAAGCATGAT
ATGTTAGAAA TGAATCTGTT TCTCAACACC CTGATCAATT AATATACTTC AATAAGCGTT TCTGTTA

>Vigan.05G180600.01
ATGGTTCAAG CTCAAACTCT GCAGCATTTT GGTAATGGGG CAAGGGAAGG AGATCAAACT TATTTTGATC CAGGTGCTCC
ACCACCCTTT AAGATTGCAG ATATCAGAGC AGCAATTCCC AAGCATTGCT GGGAGAAAAG CACACTGAGA TCTCTCAGTT
ATGTTCTCAG GGATGTCTCA ATGGTCACAG CATTGGCGGC TGCAGCAATT GCCTTCAATA GCTGGTTCTT CTGGCCACTC
TATTGGCCTG CACAAGGCAC AATGTTTTGG GCCCTGTTTG TTCTTGGACA TGATTGCGGG CATGGAAGTT TTTCAAACAG
TTCCAAGTTG AATAGCTTTG TGGGCCACAT CTTGCACTCC TTGATCCTTG TACCATACAA TGGATGGAGA ATCAGCCACA
GGACTCACCA CCAAAACCAC GGCCATGTTG AGAACGATGA ATCCTGGGTT CCGTTAACGG AGAAAGTTTA CAAGAATCTA
GACAACATGA CAAGAATGCT GAGATACTCT TTTCCTTTTC CAATCTTTGC ATATCCCTTT TATTTGTGGA ACAGAAGCCC
AGGGAAAGAA GGTTCTCATT TCAACCCTTA CAGCAACTTG TTCTCCTCTG GTGAGAGAAA AGGCGTGGTA ACTTCGACCC
TGTGTTGGGG CATCGTGCTT TCTCTGCTTC TCTATCTTTC CCTAACAATA GGTCCAATTT TCATGCTCAA GCTCTATGGG
GTACCCTATT TGATCTTCGT CATGTGGCTG GATTTCGTCA CCTACTTGCA CCATCATGGT TACACGCATA AACTACCTTG
GTACCGGGGC CAGGAATGGA GCTATCTAAG GGGTGGTCTT ACAACAGTAG ATCGTGACTA TGGTTGGATT AACAACGTTC
ACCATGACAT TGGCACTCAT GTTATCCATC ACCTTTTCCC TCAAATTCCA CATTACCATT TGGTGGAAGC GACTAAATCA
GCAAAATCAG TGCTTGGAAA GTATTATCGT GAGCCTCAGA AATCTGGGCC ATTGCCATTT CATCTATTGA AGTACTTGCT
ACAAAGCATA AGTCAGGATC ACTTCGTTAG CGACACTGGG GACATTGTGT ACTATCAGAC TGATCCCAAG CTCCACCAAG
ATTCTTGGAC CAAGTCCAAG TAA

>Vigan.05G180600.01
MVQAQTLQHF GNGAREGDQT YFDPGAPPPF KIADIRAAIP KHCWEKSTLR SLSYVLRDVS MVTALAAAAI AFNSWFFWPL
YWPAQGTMFW ALFVLGHDCG HGSFSNSSKL NSFVGHILHS LILVPYNGWR ISHRTHHQNH GHVENDESWV PLTEKVYKNL
DNMTRMLRYS FPFPIFAYPF YLWNRSPGKE GSHFNPYSNL FSSGERKGVV TSTLCWGIVL SLLLYLSLTI GPIFMLKLYG
VPYLIFVMWL DFVTYLHHHG YTHKLPWYRG QEWSYLRGGL TTVDRDYGWI NNVHHDIGTH VIHHLFPQIP HYHLVEATKS
AKSVLGKYYR EPQKSGPLPF HLLKYLLQSI SQDHFVSDTG DIVYYQTDPK LHQDSWTKSK *