GBrowse Details

Vigan.05G142000.01

Basic Information:
Name: Vigan.05G142000.01
Multiple alignment
Variant Information
Position: Chr05:11581812..11587496 (+ strand)
Length: 5685
Functional Information:
Description: Similar to Proteasome subunit beta type. [T2DN03, Phaseolus vulgaris]
GO: Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603)
Cellular Component: proteasome core complex (GO:0005839)
Molecular Function: endopeptidase activity (GO:0004175)
Molecular Function: threonine-type endopeptidase activity (GO:0004298)
InterPro: Proteasome, subunit alpha/beta (IPR001353)
Proteasome beta-type subunit, conserved site (IPR016050)
Proteasome endopeptidase complex, beta subunit (IPR016295)
Proteasome B-type subunit (IPR023333)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:120.61,90.63,87.16,70.35,140.06,164. 31,108.90,71.81
Arabidopsis thaliana homolog: AT1G56450.1
Automatic updates:
Name: NM_001249039 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527174 (LOC100527174), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249039 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max thr-endopeptidase (LOC100527174), mRNA.
PubMed ID: 23707235 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:11581812..11582010 (+ strand)
Length: 199
Type: five_prime_UTR
Position: Chr05:11582011..11582042 (+ strand)
Length: 32
Type: CDS
Position: Chr05:11582182..11582258 (+ strand)
Length: 77
Type: CDS
Position: Chr05:11582501..11582630 (+ strand)
Length: 130
Type: CDS
Position: Chr05:11582870..11583029 (+ strand)
Length: 160
Type: CDS
Position: Chr05:11583134..11583319 (+ strand)
Length: 186
Type: CDS
Position: Chr05:11586994..11587107 (+ strand)
Length: 114
Type: CDS
Position: Chr05:11587108..11587496 (+ strand)
Length: 389
Type: three_prime_UTR

>Vigan.05G142000.01 class=Sequence position=Chr05:11581812..11587496 (+ strand)
CTTTTTTTTA CTTTAAAGAA CTTTCTGGTT TGGATTGGGG CTTACGAAAT TAAACTCCGA AAACGCCGTC GTTTGATGTG
AAATATATTT AAGCAAGCTA TATTCTACTT TTTCTTCGTG TTCCTTTTCT TTTCTTTTCT TTTCTTCCCT TCTTCTTTAG
CACTGCTACG ACGATCCAAG GTGATAGATA TTTCTTGCCA TGGAAGGTGT AGCTGAATCC CAGCGAACTC TGTGAGTGTA
CTCTCTCTCA CTTCCCCCAT TTTTTCTTCA ATTTTCTTTT TTAGGGTTTT CACAGTGAAT GATTTGATTT TACTCTTAAA
CTGCACATTT TGTCTCATTT CTTTTGCCCT AAACTATGCT TTAACCCTAG GTACCCGTAC GTGACTGGAT CCTCTGTAGT
TGCTATCAAA TACAAAGATG GGATTCTCAT GGCCGCTGAT ATGGGAGGTC TGATATTCAA TTAGCTTTTT ATCTTCGTTT
CACAAAATGC TCTTTATCTG ATTATTGTGG AAGTTGCTTT CTTGGAGTAA TTTGTTTCAA AGAAATGACA TTATCGGAGA
AATAAATTTA GCGATGGTAT TAGTAGTTGA TTTCTGATTC ATGAATCTGC CATGTCTGAA AAGTTCATTA TAGTGTTTTT
AAGTATTCGA AAACTTTGTA TATCATCTGA ATGGGGGATA TGTTGATAGG TTCATATGGA TCTACCCTGC GGTACAAGAG
TGTTGAGCGT ATCAAGCCTA TTGGAAAACA TTCTCTCCTT GGTGCTAGCG GGGAGATAAG TGACTTTCAG GAGATTCTGC
GCTACCTTGA TGAGCTTATG TCAGTACCTT TTCCTTTTAA TAATAATTGT TACGCATTGT GAACCGGTTA TCTCAAATAA
GTTTAGTGTT AAAGGTGTTA TGAGTTAAAA TGGTTTCATC TGCTCCGTTT TCCGCTATGC TTGCTTCTTC TTTTTTTTGG
GCACAGTAAA GTACTCCTTT TGTGTATTTT TTCCCTTTCC TTCCTTGTAC TACAAAAATT CCCATCTAAA TGTTTTTGCT
TTTACTTTTG ATTTGCAGTC TTTATGACAA CATGTGGGAT GATGGGAATT CTCTAGGACC AAAGGAGGTG CACAATTATT
TAACCCGTGT AATGTACAAT CGGCGGAACA AGTTCAATCC TTTGTGGAAT GCACTTGTGC TTGGTGGAGT TAAAAATGGC
CAGAAGTACC TTGGCATGGT ATGAATTTGT GTTTCTTTGT TTGTTTTTTA TTTGCAGTTC CAAATCTGGT ATACCTGCAT
GTTTTTTTCT TTCCAACAAT TAAAATCATG TATCTTATCC AGGTTAACAT GATTGGGATT AATTTTGAGG ATAACCATGT
AGCAACTGGG CTTGGAAACC ATCTTGCTAG GCCAATTCTT CGTGACGAGT GGCATGAAAA CTTGACCTTT GAAGATGGTG
TCAAATTGCT AGAAAAGTGC ATGCGTGTGC TTTTATACCG GGATAGGTCT GCAGTCAACA AAATTCAGGT TTTATACTGT
TTCCTTTTAT GTTCTCTGCT CTACTCTACT CCCTCCTTTC TCCATTTTCC ATTTATCAAA CATGTATTGT GGATAAGTTC
AGAGGGTTTC AATTTGTACA ACCTCAAATG TACATTTCTC ATCTGGATTA TTTATCAAAG CAGTAAAAGG AATTTAAAAG
TGAGTGGGCA TTAGGGAGGC TTTAAAATCT CACAACCTCC TTTTGATGGC CTTTTCCTTC ACTCTAAACT GATTATAATA
AGATATGGGA CCTAGCTTAG ATAAAATTGT TCCTACCAAC TTGACCTATA GTTCATCAAT AACAAGTATG AGCAATTTGT
TTGGGATAGA CCATAGTTAT CTTGTTCAAT GCTCTATAGT CAACCCAACC TCCAACATTC ATCTTTTTTC TTTTCTAAAA
TTAAAAAAAA GTGAAAAATG ATGTTATTGT CCTCCGTTTA CATCTGCCAA TTGTTCCCCT TTGTTAGCTC TACATATAGG
AGAATATTCG TCTCATTCTC ATGTTTATGT TAATTTAAAT ATTTTGCTCA ATATTGTGAT TGGTTTTGGA ATTTATACGA
GAAGCTTTGG AAAATTGGTC GGTGATTTTG TCTGATGTTC TCTAAATTTT GGGTTATGCA TATGGTTCGT GCTGATGCAT
ATATGAGAAA GTTCATCAGT TGGTTTAGTT CCAAAGCATT TCTCACATGC TTACTTAGAT GTTTTTGTGT TTTTTAGGAA
ACTAGAAACA ACGATGAAAG AATAAGACAA AAAAGAAGAA GCAAAGATAA AGTCTTGCAC TGTATTATTC ACTTTACAAT
GTAAAAGCCA AAGCTTTCAA AGGAAAATGA CTTTCCTTTC TCACAGGGTT AACCCTGTCA CAAACATCAA CCCAAAAAAA
CTCCCCTCAA CATTCCACAA GATAAGAATA TATAGACTTT CCTAGAAAGT CTCCTCCCAC GTAACAACTA ATAATTTTAC
TACTTTTATC TTTAAATTTC TTCCTAACCC TCATATTTCT TCGATGCCTA ACATTACTCT CTTGCTGGAA CAACCTTGTC
CTTAAGGTTG AGCTCTGGCA ATTTAAGTTG CTTGAGGCCC TCATGACTGA TTTCTTTATC CATGCACTCA ACTAGCTCCT
TTAAACTAAT CAAAGCGCCA TTGTTGACGT GTTGATCTTT GTTAATATCT TTATCACCAT CCTTATTGCT GACTTGGTCA
TAACTCTTGC AATTAGTTGT CATAAGAAGC AAACCAGAAA CACCTTGATC AGTAACATCT AGAAAAATGT TACCAGGTAC
CATATCAGCG ATTTCCAAGC CAGTAACCTC CACAATAACA TTTTTGGATG TCTTGACAGG AAAAATTTCT TGAAAGGCTC
CAACACATTC CTTATTTTTA ATTTCTAGTT CTGAAGAATC ACAAGTTTCC TCCAGATTAG GTAACAACTT AGATCTTGCT
TCAATTGATG GATTTGGTTT GGGCACCAGC TCCAAGCAGT TTTCTCTCTG GTTCAACAGC ATCTGAATTG TGGTTCAACC
ATTGTATCAA TTTCTGTCAC AGAAACCAAT TTCACATCTG CACCAGAATT ATGTGATTGG CATTCAGATT CAGTGTTCTA
CAATTCGAAC TCTCGAGTAT TTTTGGGACC CAGAGTCAAA TCTATCTGCA AACTAGATAC CTTTTCAGTA TCATGCGAGT
CTTCCACTAG ATGCAAAACG TTACTTGGTT CTTGAAAAAC ATCATCAGCA ATCTTGACAA ATCCAATGTG TATTGTGTCA
ATCAAACTCA CATTGGACAA GACATTCTCT AACAATCTAA CCAACCTCCT CGTGCTATAT GCTCTCTGTG ATGGGATACC
ACTCGGGGAC TGAATCTTGG TGGGGTGCAA ACCGAACGAC TTGTAGCTGT TCTCCCACCA ATGGAGAATG CAGCCTCCAC
CTTGATTGGA TTCAAAATTT CATCCAATCA TTCAACTTGA CTTAGAGCAG CAAGAGCATT AGCCATGGCA ACATTGGTGA
TGTTGGTGGG AATCTTGTAG AAGGTCTGTA GCTTTGCAAA GAAATACTCC GGCAAACGAT CTTTCGGTGT TTGATTTACT
TGTGACATTA ATATCTTGAA TTCTTGCATG AAAAATTTTA CACATCTAGT CTGTTACTGC TGCCAACTCT CAAATAATAC
GCTTCCCCTA TTGCCTCCAG CACTCCTTAG TAGAGTTGTT GCAAGATCTT CCCAAGAAGG GTTCTTGGTT TTTTGTTGCA
AGATCTTCCC TATTGCCTCC AGCTTTCCTT GCTCATTGGC CCATCTCTCC AAAGCACTCA CTTTGCTTTC CATGATTCTC
CCTCAACACA TCTGGTAGGT TGCACCAAAT TTTTAGGAAC CTAGAAACAG TGATGAAACA ACAAGACAAA AAAGAAGCAA
AGATTAAGTC TTGCAATGTA TTATTCACCT TACACTGTAA CAGCCAAAGC TTTCAAAGGA AAACTGTTTT CCTTTCTCAC
AGGATTCTCT CAGTCACAAA CATCAACTAA AAAAACTTCC CTCAACATCC CACGAGATAA GAATATATAG ACTTTACTAG
AAAGTCTCCC CCCATGCAAC AACTAATAAT TTTACTACTT TTATCTTTAA GGGTGTATTC CTTTTAGGGT ATTTACCTGT
TTGTGGGAGA GTAAATGGAG ATGACATGCT TGTCCCTTCC AAGAGACTTG GGGGTAAATG AGGGAGAGTA TTTGTGGAAG
AGAGGTGAGA TTCTATCTCT CCTAAGGTGA GGAGGTGATT TGAGGAGATG AAGAATGCAA TTACCAAATG ATCCTTGGTT
TTTTCTAAAA TTTACAGTCC TCTTTATCTA TGATAACTAA TAATCATAAT AATAATTTTT TTTAATAATA ATAATAATAA
TGAAATATAA AGTATTTAAA AATAATGTTA ATGCAGAATA ATTTAACCAA TTACAGTTTA TTTTAAATTA ATTACACCTA
TCAATTTTTT TATAAGAAAA TCATCCAGGT TTAATTTTGA ATTAATTTTA ACTAATTACA TTTCATTTTC TTTTCATTTT
AATCATAAGG ACAAATATGT ACTCTTATCA CTTAATCTAT TAAAACATTA TTTTTATCTC ACATCCATCA AATTATTCAC
AAATTTTTAT AAATTTTACC TTCAAATTTC TTCACTTTCA CCTCCAAATC CCTTAAAAGG AACAACATCA CTTTATCCTC
CATTCTCTCT CAAATTATCT CTTCAAAAAG AAGAGAGCCT AAATTTCTTT CTAACCCTCT CATTTCTTCC ATGCCCAACA
CAAGCTAGGC GGTAACTACT AACTACTAGA ATGTAGGCTT GTTTATCATT AACTGGTGGT TGTGTCTGCT GATGTGTAAA
ACTTTCAATT TCTTTTGCTG TGCACATTCT GTAGAGTGTT GGTGGTCATT TTTATCAGTC AATCACTGCT CTGCTTGTGT
ACCGTAGGTT CTTGACTGCT AAACTGTATA TATGTTGAAG ATGTTAAATC AGGGGTAAAC TGAACCTCTA TTGCACCCTT
TTGTATCATG TGTGCATGAG GATTGAGGCT TCGATCTGAA CTAAAATTCT CACTTCTTCG CTTTGTTGAA CTGAAATGGG
TTGTAATACA TTGCACTATG AATAATTTAT GATATTTAAT TGTAATGTAC GACGGTTTGC AGATATCCAA AATTACAGAT
GAAGGTGCAA CTGTTTACTC ACCTTTCTCG TTGAAAACGT ACTGGGAGTT CTCTGCCTTC AAGAATCCAA CAGTGGGCGC
TGAAGGTTCG TGGTAGACCA CTCATTGTGA AATGAAACAG AATTTGAAAT TTCAAGGTGT TAATGGGATG TAAAATGAAG
TTAAAATAAC TGTTTTTTTT TATGTCTTTT TAGGTTTGAG CTGATCTGTT TCATTAGAAT CTATATTCCA ATTTCCTTTC
ATTATGACAT TCATAAGATA CTTTTCCTTT CTCAATTGCT TGCATAGACA TTAGTGCGGC CCACCGGTTT GAATTTTAAA
TTAATCATGC AAAGATTTGA AAACGAGTTT CGATTGTTAT GTTTTCTTTT CCTATAAAAA ACTGAATGCA TCTGCCATTT
TGTTTTAGAT GTTGGGTCAC TTGGGATTTC TAGAAGAAAC AATGTAGGGT CATTTTTATA TAATTTTTTG TAGGATAACT
TTTTT

>Vigan.05G142000.01
CTTTTTTTTA CTTTAAAGAA CTTTCTGGTT TGGATTGGGG CTTACGAAAT TAAACTCCGA AAACGCCGTC GTTTGATGTG
AAATATATTT AAGCAAGCTA TATTCTACTT TTTCTTCGTG TTCCTTTTCT TTTCTTTTCT TTTCTTCCCT TCTTCTTTAG
CACTGCTACG ACGATCCAAG GTGATAGATA TTTCTTGCCA TGGAAGGTGT AGCTGAATCC CAGCGAACTC TGTACCCGTA
CGTGACTGGA TCCTCTGTAG TTGCTATCAA ATACAAAGAT GGGATTCTCA TGGCCGCTGA TATGGGAGGT TCATATGGAT
CTACCCTGCG GTACAAGAGT GTTGAGCGTA TCAAGCCTAT TGGAAAACAT TCTCTCCTTG GTGCTAGCGG GGAGATAAGT
GACTTTCAGG AGATTCTGCG CTACCTTGAT GAGCTTATTC TTTATGACAA CATGTGGGAT GATGGGAATT CTCTAGGACC
AAAGGAGGTG CACAATTATT TAACCCGTGT AATGTACAAT CGGCGGAACA AGTTCAATCC TTTGTGGAAT GCACTTGTGC
TTGGTGGAGT TAAAAATGGC CAGAAGTACC TTGGCATGGT TAACATGATT GGGATTAATT TTGAGGATAA CCATGTAGCA
ACTGGGCTTG GAAACCATCT TGCTAGGCCA ATTCTTCGTG ACGAGTGGCA TGAAAACTTG ACCTTTGAAG ATGGTGTCAA
ATTGCTAGAA AAGTGCATGC GTGTGCTTTT ATACCGGGAT AGGTCTGCAG TCAACAAAAT TCAGATATCC AAAATTACAG
ATGAAGGTGC AACTGTTTAC TCACCTTTCT CGTTGAAAAC GTACTGGGAG TTCTCTGCCT TCAAGAATCC AACAGTGGGC
GCTGAAGGTT CGTGGTAGAC CACTCATTGT GAAATGAAAC AGAATTTGAA ATTTCAAGGT GTTAATGGGA TGTAAAATGA
AGTTAAAATA ACTGTTTTTT TTTATGTCTT TTTAGGTTTG AGCTGATCTG TTTCATTAGA ATCTATATTC CAATTTCCTT
TCATTATGAC ATTCATAAGA TACTTTTCCT TTCTCAATTG CTTGCATAGA CATTAGTGCG GCCCACCGGT TTGAATTTTA
AATTAATCAT GCAAAGATTT GAAAACGAGT TTCGATTGTT ATGTTTTCTT TTCCTATAAA AAACTGAATG CATCTGCCAT
TTTGTTTTAG ATGTTGGGTC ACTTGGGATT TCTAGAAGAA ACAATGTAGG GTCATTTTTA TATAATTTTT TGTAGGATAA
CTTTTTT

>Vigan.05G142000.01
ATGGAAGGTG TAGCTGAATC CCAGCGAACT CTGTACCCGT ACGTGACTGG ATCCTCTGTA GTTGCTATCA AATACAAAGA
TGGGATTCTC ATGGCCGCTG ATATGGGAGG TTCATATGGA TCTACCCTGC GGTACAAGAG TGTTGAGCGT ATCAAGCCTA
TTGGAAAACA TTCTCTCCTT GGTGCTAGCG GGGAGATAAG TGACTTTCAG GAGATTCTGC GCTACCTTGA TGAGCTTATT
CTTTATGACA ACATGTGGGA TGATGGGAAT TCTCTAGGAC CAAAGGAGGT GCACAATTAT TTAACCCGTG TAATGTACAA
TCGGCGGAAC AAGTTCAATC CTTTGTGGAA TGCACTTGTG CTTGGTGGAG TTAAAAATGG CCAGAAGTAC CTTGGCATGG
TTAACATGAT TGGGATTAAT TTTGAGGATA ACCATGTAGC AACTGGGCTT GGAAACCATC TTGCTAGGCC AATTCTTCGT
GACGAGTGGC ATGAAAACTT GACCTTTGAA GATGGTGTCA AATTGCTAGA AAAGTGCATG CGTGTGCTTT TATACCGGGA
TAGGTCTGCA GTCAACAAAA TTCAGATATC CAAAATTACA GATGAAGGTG CAACTGTTTA CTCACCTTTC TCGTTGAAAA
CGTACTGGGA GTTCTCTGCC TTCAAGAATC CAACAGTGGG CGCTGAAGGT TCGTGGTAG

>Vigan.05G142000.01
MEGVAESQRT LYPYVTGSSV VAIKYKDGIL MAADMGGSYG STLRYKSVER IKPIGKHSLL GASGEISDFQ EILRYLDELI
LYDNMWDDGN SLGPKEVHNY LTRVMYNRRN KFNPLWNALV LGGVKNGQKY LGMVNMIGIN FEDNHVATGL GNHLARPILR
DEWHENLTFE DGVKLLEKCM RVLLYRDRSA VNKIQISKIT DEGATVYSPF SLKTYWEFSA FKNPTVGAEG SW*