GBrowse Details

Vigan.05G140700.01

Basic Information:
Name: Vigan.05G140700.01
Multiple alignment
Variant Information
Position: Chr05:11485765..11490418 (+ strand)
Length: 4654
Functional Information:
Description: Similar to Uncharacterized protein. [I1JRL7, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Tetratricopeptide-like helical (IPR011990)
Tetratricopeptide repeat-containing domain (IPR013026)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:37.13,40.47,25.45,28.04,44.11,35.94,37.09,27.97
Arabidopsis thaliana homolog: AT3G04830.1
Automatic updates:
Name: NM_001255446 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ER membrane protein complex subunit 2-like (LOC100796542), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:11485765..11485933 (+ strand)
Length: 169
Type: five_prime_UTR
Position: Chr05:11485934..11486120 (+ strand)
Length: 187
Type: CDS
Position: Chr05:11486327..11486391 (+ strand)
Length: 65
Type: CDS
Position: Chr05:11487081..11487129 (+ strand)
Length: 49
Type: CDS
Position: Chr05:11488269..11488363 (+ strand)
Length: 95
Type: CDS
Position: Chr05:11488593..11488678 (+ strand)
Length: 86
Type: CDS
Position: Chr05:11488786..11488845 (+ strand)
Length: 60
Type: CDS
Position: Chr05:11488950..11489031 (+ strand)
Length: 82
Type: CDS
Position: Chr05:11489222..11489335 (+ strand)
Length: 114
Type: CDS
Position: Chr05:11489610..11489780 (+ strand)
Length: 171
Type: CDS
Position: Chr05:11489781..11490418 (+ strand)
Length: 638
Type: three_prime_UTR

>Vigan.05G140700.01 class=Sequence position=Chr05:11485765..11490418 (+ strand)
TTCTGAGGCG GAACCTGGAG TGAAAGTGCG ATCCCACTGT ATTTCATCTC GTCTCACTCC GGGTGTGTAT TTTCAACGAC
AGAGAGACAG CGATCGATAT TTGCAGCAAC AGATCGAAAA TCTGTTTATC GATTTGTTGG ATCTGCGTTT GTGAATTGTG
GGAAAGAAGA TGGTTACCAA AACAGAGGAG ACTCAATTGA ACAGGCTTGA AAATCAGGTC GACAACGGCG GCGGCGGCGC
CTGGGACTAC CTCTGCCTTG TCAGAAAGCT CAAGGTTCGC CGTTCCCAGA AGGTTCTGAA GCATGGCCTC TCCATCTTGA
ACGACCCCAA ACAACGATCC TCTCTAGGCG CCGATGGTCA CTCCTCCTTC GCTACTGACC TAATTTTTGT TGTTATGATT
CTATTGCGTG ATTCTGTTAT TTATGATTTT ATGCGGTGAT TTTTGGAGCT TCGAATTTCA CTGTCTTGTA AAACCTTGTT
TTTTCAGCTA TGCTTTACTT GCAGGTATAT ATCTTTCACT GAATTTGACT TTTGACTAAT GTTTGGGTAT TTGTGTGTGC
AGAATGGACC TTGTACGAAC AGGTTGCAGT TGCTGCTATG GATTGTCAAT GTCTCGACGT TGCCAAGGTC TCGATCTAAT
TTGGTCGTGT TTCTTGTATA ATGAATTGTA AATTTTATTG GGCACTATTC TACAAATCGT AAAATAATAG CCTCCTTTCG
TTGAAACAAT GTTGTTGGAG TGAATTTCTT ATGTAGTGTA ATGATTACTC AATCAGGAAT CTTATGCACG GGTTGAATCT
TACTTATTTG AAATAGTTGG AACTTGCACT TTACTCTCTT GTCACTTGTG TTGTGGAGGT TCTGATTATG CACCAGAGAC
GGTTGCTTGT GAGTTTTACC TGGAGTTATA ATCTTGCTTG ATGTTTTTTT TTTGGTGCTG CGTAATGGTT GATTTTCAAT
ACGTACCTTG TAAGGTTATA GTCCACTGCA TTTGATTGCT GTTCAATTTC TGGGTAGTTT TTGTTTTAAG TTTGATTCCC
TTTTGGCCCT TTATTCTCTG TTGATGATGG ATGGAGGAAA TAATCGTTTT CTGATCTTGC TATACCGTTA TTCATTCACT
GTGTTGTATC GTTGTTTTTA AAGTTCTTGG CAAGATGTTT GATCTTGTTT GCTTTTGTAA GTTCCGAGCC TGCAAATTAA
TATGCTGCTG AACTTGTATG TTGTCATCAT GTTGTCCTCT TCGTATGATA AGGGAAAACA TCATGTTTGA GATTTTATGT
CTTGAAGTTG ATAATATTTT TCTTCTTCTT TATCAGGACT GTACAAAGGT TCTTCGGAAG AGATTCCCAG ATAGTAAAAG
AGTTGGTAAG TTGATATTAT CTATACCTTT TAACCATGTT TTGATTTTGA GTTAGTTATA GAACCATCTA CACAACTCTT
GACATAGAAA CGATTCTCTA TAAGCTTTTG GGGGCAGGGG GAATTAAATT GTACCACCTG AACTCAGAGC TCATTTTTTA
CAGTTCTAAT CTTAGATGCA GATTTAATAG TTGTGCAGGC AGCATTACGA ATGCTGGTGA CACGTGCCTT ATAATTGGCC
AGTCTACATA TTGGTGCTGC TAGGCTAAGA AACTGTTTCT AGTGACATTG CAATGATTGA GCTGTCTAAT TTATATCTTG
AGCCCTATTA TAATTTTCCC AAAACACGAA CTGTATTGTT TACTTGTCCC AGATCAGGTT CTTGAAACAA ACTTTTAGAC
CGGTGGATAA TTTAGATAAT TTGTATTCAA TTCTTTGAAG AGGAATGTTA GGGCTATGTT TGGTAAAATT AGCTCAAGAT
AGTTGTTGAA AAGAAATCTG AAAAAACTAC ACAAAAAGTG TTTTAATAAA AGTAGCTGCC TGAAAGCTGT AAAAGAACAA
AAGAAGACAT GATTAATTGT TGAATCAAAT CTTTATATTA GGTAATTACG TATTTTCAAT AATTATAAAT TTATATTATC
GTAATTTAAA TTATTTTATT TGTATAAATT AAGTTCCAAG TAATATTTGT GTAAATATGC ATTGTTAATT ATAATTTAAA
ATATCTATTA TTTCTCAATA ATTTTTTTAT TAAAAATTAA AATACATAAT TAAATAATTA AAATAATAAT AAACAAGTGT
TGCATTAAAT CAATAATCCA AAAAAGTGTA CAAGTAAAAC ATAATCCAAA AATTGTAGTC ATAAACATGG GGTTTTCTAT
TATTATTTCA AGGGGTAAGA TGGTAAATTA TAGGTTTCAT CTAGATAGAT TATTTTGAAA GCTAATGGAT TAGCTTATTG
AAATAACCTA AAAGCTAAAT ATTTTTTCAA AATTTCATTT ACTAATTTCA TCTATAATCT AGATGAAATG CTTTATAAAC
CACACTCTGT AACATAACTA CACACAATCC AAATATATCT ATGCATATGC AAGCTCCTGT TCTCTCTTAA GAAAGAATTG
ATTTAAGCTT CAAAATTGTT ACAGGTAGGC TGGAGGCAAT GTTGTTTGAA GCAAAAGGAT CCTGGGATTT GGCAGAAAAG
GCTTACGCAA GCCTTTTGGA GGACAATCCT CTTGACCAAG TAAACTCACG TAACCTTATG GGGAAACCAA AAAGGGGAAC
TGTTGGTTGT TCAGTTACTC TATGTGATGA GACAAAAATC ATATAATTGT GGCTTCTTCT TTTTGTGTTT TGTTATTTCC
ACTTGATTTT AATATTTCGG TTTTACATTA AACAGGCCAC GCATCCTGTG TAAAGAAAGC CAAAAAGCTA AAGTGTTTAA
TCTTCTTGGT TGTTGTGATT TTGTGCAGGT CATCCATAAG AGGAGGGTGG CAATGGCAAA GGCCCAAGGC AACATTTCTG
TGGCTATTGA CTGGCTTAAT AAATATCTAG AAACGTGAGA CTAATGTTAA AAGTTTTATT TTCTTCCATA ACTAAAAAAA
ATTAGTTTCT GATTTACATA AGAAAATATT GCATGTATCT GAATTATTCT CGTTATAACA GATTCATGGC AGATCATGAT
GCATGGAGAG AACTGGCTGA AATATACGTT TCCCTGCAAA TGTTAGTTTT ATTCTACCAT TTATCTTCCC GCTGCAAGGG
TAACATTGAT ATTGCTAATT ATTTATCCGC CTTTTGTTTA TTTTGGCTTT CTGTCTACGT AATAGGTATA AACAAGCAGC
ATTTTGTTAC GAGGAGTTGA TATTATCTCA ACCTACTGTT CCACTATACC ATTTAGCATA TGCTGATGTG AGTAACTTCT
TTATGAAATG TGATCACTTT TTTTTTAGGT CAAATAAATT CTTCTCCTCC TCTCATTTCT TTGCTCCGGT AGTAACCAAC
AAGGCACAGA AAACACTGCA TGCTAGAGGT GTAGTAGCAT AGCAAGAGTC TTACTTTTAT TGCATAAGGA CGTTTTCTTG
ATTTGTGGCA TTGTCAGGTG CTTTATACGC TTGGTGGATT AGAAAACCTC CAAACTGCCA AGAAATACTA TGCGTCTACT
ATTGATTTGA CTGGAGGCAA AAACACCAGA GCGCTCTTTG GGATATGCCT GGTAAGATCT TCCATGAGTA TTAATTTTGT
GTGGTCCTCT GCAACTGCAA GTTATCGTCT GTGTGAACTG ACTATAGTTT GTTTTAATTT GGAATTTAGT TGAACCTATG
TTTTGTTGGT TGCCAAGAAA GTCATCATTT AGTTTTTACT TCAGAAGATT TCAGTTTTCC TTCGTAGATT CTTGATCTTC
TCCTTAATAA GGATCTCTGG ATTCTTCTTT CCGAAACTAT TAATTGATAT ATGCCTGAAA TTTTAGTTTT GCTCCTGTTC
TCCAGTGCGC TTCTGCTATT ACGCAGCTTA CGAAAGGGAA AAGCAAGGAG GAGAAAGAAG GGTCACAGTT ACAATCTCTA
GCGGCCAAAG TATTGGAGAA AGATTACAAA CAGAGAGCTC CGGACAAGCT TCCTCAACTT ACAACTGCCT TAAAGAGTTT
AACATTGTCA TCATGATGCA GCGTCTCTTA AAGATTATTA TTTGATCACT TTTTGAAATT TTCTAAGATT GTTGCCAGCT
TGAATTAACG CACTTAGATT TTCTGAGTCA TTTTCTTCTC AATATTAAAA TGAAAATTCT TAACTTTCTG CAGTTTACCT
TACATAATGA ACTATTTATT GAAAGACATT TAAAGTTTCA GATGGCCTGG ATCCAAAGGT ATTGTCATAG CTTTGAGGAT
GCATAAGATG GGGGCATGAT TTGTTTTTGA CATCCTTTTG CCACTTATTA TTTTCGGTGG CTATACAAAT TAAGTTAAAA
TATTAATCTC CCTCCTTGTT TAATCATTTA CGTTAGTGTA ACATTATGAT TTGATGATGT AGCTCGTTGT ACTGTTAATG
GATCCCAGTC ACACAGTTTG GGGCAGCAGA ATTTTGCACT GCTCTGGCAT TGGAGAAAGT GACAACTCAA TCCTATTTTT
GGTATCAAAT ATTTGTTCCT TCGAGGTCGT GCTCGCTTGG ATTAATTTAT TTTGAAGATT TATTTCGTAA ATTTTATATT
TAGATCTTGA AATATAAATA TAGGAATATC ATGTCACTTT TATGAATTTA ATTCAAGTTT ATTCGTCAAA TTAAGGTTCA
TGTGGTAAAA TATA

>Vigan.05G140700.01
TTCTGAGGCG GAACCTGGAG TGAAAGTGCG ATCCCACTGT ATTTCATCTC GTCTCACTCC GGGTGTGTAT TTTCAACGAC
AGAGAGACAG CGATCGATAT TTGCAGCAAC AGATCGAAAA TCTGTTTATC GATTTGTTGG ATCTGCGTTT GTGAATTGTG
GGAAAGAAGA TGGTTACCAA AACAGAGGAG ACTCAATTGA ACAGGCTTGA AAATCAGGTC GACAACGGCG GCGGCGGCGC
CTGGGACTAC CTCTGCCTTG TCAGAAAGCT CAAGGTTCGC CGTTCCCAGA AGGTTCTGAA GCATGGCCTC TCCATCTTGA
ACGACCCCAA ACAACGATCC TCTCTAGGCG CCGATGAATG GACCTTGTAC GAACAGGTTG CAGTTGCTGC TATGGATTGT
CAATGTCTCG ACGTTGCCAA GGACTGTACA AAGGTTCTTC GGAAGAGATT CCCAGATAGT AAAAGAGTTG GTAGGCTGGA
GGCAATGTTG TTTGAAGCAA AAGGATCCTG GGATTTGGCA GAAAAGGCTT ACGCAAGCCT TTTGGAGGAC AATCCTCTTG
ACCAAGTCAT CCATAAGAGG AGGGTGGCAA TGGCAAAGGC CCAAGGCAAC ATTTCTGTGG CTATTGACTG GCTTAATAAA
TATCTAGAAA CATTCATGGC AGATCATGAT GCATGGAGAG AACTGGCTGA AATATACGTT TCCCTGCAAA TGTATAAACA
AGCAGCATTT TGTTACGAGG AGTTGATATT ATCTCAACCT ACTGTTCCAC TATACCATTT AGCATATGCT GATGTGCTTT
ATACGCTTGG TGGATTAGAA AACCTCCAAA CTGCCAAGAA ATACTATGCG TCTACTATTG ATTTGACTGG AGGCAAAAAC
ACCAGAGCGC TCTTTGGGAT ATGCCTGTGC GCTTCTGCTA TTACGCAGCT TACGAAAGGG AAAAGCAAGG AGGAGAAAGA
AGGGTCACAG TTACAATCTC TAGCGGCCAA AGTATTGGAG AAAGATTACA AACAGAGAGC TCCGGACAAG CTTCCTCAAC
TTACAACTGC CTTAAAGAGT TTAACATTGT CATCATGATG CAGCGTCTCT TAAAGATTAT TATTTGATCA CTTTTTGAAA
TTTTCTAAGA TTGTTGCCAG CTTGAATTAA CGCACTTAGA TTTTCTGAGT CATTTTCTTC TCAATATTAA AATGAAAATT
CTTAACTTTC TGCAGTTTAC CTTACATAAT GAACTATTTA TTGAAAGACA TTTAAAGTTT CAGATGGCCT GGATCCAAAG
GTATTGTCAT AGCTTTGAGG ATGCATAAGA TGGGGGCATG ATTTGTTTTT GACATCCTTT TGCCACTTAT TATTTTCGGT
GGCTATACAA ATTAAGTTAA AATATTAATC TCCCTCCTTG TTTAATCATT TACGTTAGTG TAACATTATG ATTTGATGAT
GTAGCTCGTT GTACTGTTAA TGGATCCCAG TCACACAGTT TGGGGCAGCA GAATTTTGCA CTGCTCTGGC ATTGGAGAAA
GTGACAACTC AATCCTATTT TTGGTATCAA ATATTTGTTC CTTCGAGGTC GTGCTCGCTT GGATTAATTT ATTTTGAAGA
TTTATTTCGT AAATTTTATA TTTAGATCTT GAAATATAAA TATAGGAATA TCATGTCACT TTTATGAATT TAATTCAAGT
TTATTCGTCA AATTAAGGTT CATGTGGTAA AATATA

>Vigan.05G140700.01
ATGGTTACCA AAACAGAGGA GACTCAATTG AACAGGCTTG AAAATCAGGT CGACAACGGC GGCGGCGGCG CCTGGGACTA
CCTCTGCCTT GTCAGAAAGC TCAAGGTTCG CCGTTCCCAG AAGGTTCTGA AGCATGGCCT CTCCATCTTG AACGACCCCA
AACAACGATC CTCTCTAGGC GCCGATGAAT GGACCTTGTA CGAACAGGTT GCAGTTGCTG CTATGGATTG TCAATGTCTC
GACGTTGCCA AGGACTGTAC AAAGGTTCTT CGGAAGAGAT TCCCAGATAG TAAAAGAGTT GGTAGGCTGG AGGCAATGTT
GTTTGAAGCA AAAGGATCCT GGGATTTGGC AGAAAAGGCT TACGCAAGCC TTTTGGAGGA CAATCCTCTT GACCAAGTCA
TCCATAAGAG GAGGGTGGCA ATGGCAAAGG CCCAAGGCAA CATTTCTGTG GCTATTGACT GGCTTAATAA ATATCTAGAA
ACATTCATGG CAGATCATGA TGCATGGAGA GAACTGGCTG AAATATACGT TTCCCTGCAA ATGTATAAAC AAGCAGCATT
TTGTTACGAG GAGTTGATAT TATCTCAACC TACTGTTCCA CTATACCATT TAGCATATGC TGATGTGCTT TATACGCTTG
GTGGATTAGA AAACCTCCAA ACTGCCAAGA AATACTATGC GTCTACTATT GATTTGACTG GAGGCAAAAA CACCAGAGCG
CTCTTTGGGA TATGCCTGTG CGCTTCTGCT ATTACGCAGC TTACGAAAGG GAAAAGCAAG GAGGAGAAAG AAGGGTCACA
GTTACAATCT CTAGCGGCCA AAGTATTGGA GAAAGATTAC AAACAGAGAG CTCCGGACAA GCTTCCTCAA CTTACAACTG
CCTTAAAGAG TTTAACATTG TCATCATGA

>Vigan.05G140700.01
MVTKTEETQL NRLENQVDNG GGGAWDYLCL VRKLKVRRSQ KVLKHGLSIL NDPKQRSSLG ADEWTLYEQV AVAAMDCQCL
DVAKDCTKVL RKRFPDSKRV GRLEAMLFEA KGSWDLAEKA YASLLEDNPL DQVIHKRRVA MAKAQGNISV AIDWLNKYLE
TFMADHDAWR ELAEIYVSLQ MYKQAAFCYE ELILSQPTVP LYHLAYADVL YTLGGLENLQ TAKKYYASTI DLTGGKNTRA
LFGICLCASA ITQLTKGKSK EEKEGSQLQS LAAKVLEKDY KQRAPDKLPQ LTTALKSLTL SS*