GBrowse Details

Vigan.05G123800.01

Basic Information:
Name: Vigan.05G123800.01
Multiple alignment
Variant Information
Position: Chr05:9927792..9931382 (+ strand)
Length: 3591
Functional Information:
Description: Similar to NC domain-containing protein-related. [XP_007051493.1, Theobroma cacao]
InterPro: LRAT-like domain (IPR007053)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.39,1.04,14.77,5.82,16.54,67.93,14. 13,18.13
Arabidopsis thaliana homolog: AT1G01225.1
Automatic updates:
Name: NM_001249712 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527481 (LOC100527481), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249712 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527481 (LOC100527481), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:9927792..9928279 (+ strand)
Length: 488
Type: five_prime_UTR
Position: Chr05:9928280..9928373 (+ strand)
Length: 94
Type: CDS
Position: Chr05:9930306..9930988 (+ strand)
Length: 683
Type: CDS
Position: Chr05:9930989..9931382 (+ strand)
Length: 394
Type: three_prime_UTR

>Vigan.05G123800.01 class=Sequence position=Chr05:9927792..9931382 (+ strand)
ACCCTTGTGT ATTACGTTAA TAGTTTAATA CCTAGACACC ATTGTCCACG CCGGGTCAAC TGTTAAGGAG AAGAGTCCAA
AACCATAAAA AAACTAGCCA AAGATTCATC ATTATTAATC ACCATCCGTC CATTCGTAAT CCATGATGAT GATGGCGATC
ATCGTCGTCG TCGCTATCGG TATGTGCCAC AGAAACAACC CTTTAACAAA GGTTGGCATT TGGATTGGGT GAGGGTAGTT
GATGAGAAGG TTACCATCGA TTGCCACACA CATTCCAATT CCACACGCAA TTACGTTTGG TTTTCAGTTA ATTTTCAGAA
CGACAATAAA ATAATATTCT TGCTGTTGAA TAATTAGGAT TGGTGTGGGG CCAAGTCTAA TATAATAAGA AAATTGGCAC
TCTTTCTTTC TGCTCTGCTA TGCTACAACC ACTGAAGCTT GGAGCGGTGT TACAGTGACA GTGGCGAGTT TTAGAGTGAG
AGTGAGAAAT GGGTCTGATT TCTAACAGAG TGGAGAGACA CGAGATCAAG CCTGGCGACC ATATCTACAC CTACAGAGCT
GTTTTCACTT ATTCTCATCA TGGTCTTTCT CAATCTCTCT TTTTCCTCTC AAAATTAAAT TTCATTTTTT TATTTGTCGA
TTTTATTCTA TTTATTTGCA ATGTGATTTC TTTGATCTAG CTTTCAGCAA TTGGGTTTTC TGCATCGCCT CCTGCATTTT
GTATTTTTTT TTGTTTGCCC TTTTTCTGTT TGAGAAAAAA AATGTGTGAT GTGTTTGCAG AATTGCAAGT GGGTCGATAG
TGATGTTGTT GTTGAAGGAC CCCCGACCCC CGTCTCCCGC CACGGGGAAA ACGTTTGTTT TTGCTTTGTC AATTCAATTT
GGGTTTCGTG ATTTGTAAGA AAAAATTGTT CTTTTTTGAC TTTCGATTGA TGGGTGTTGT AGAGGATTTT TTTTTTTCTC
TCTTCTTTCA ATGAGTAAGT TTTTGTGTGA TGTTCGCTGG GTCCCGTGAC CCTTTTGTTT CCCCGACTCT TCTTGGTGTC
CATGACGTTG ATTTTGGTTC CTTTACCCGC TGGTGGCTGG AACTGGACTC CTTTTATTTG TGCATGTGCT GCTATCATTG
CCATAATGAG TATGCTTTGT TTAGCTTTAT GTTTAGGAGG CAATGCAATA ATTTGGTAAC ATTCAACATG GTGTCAAAGT
GGCATTGTAA AGCAGAATGT GTATGGGATG GTAATATGAA ATGTGAGCAA ATTAATTATG AATTTATTTT TTGCTGGATT
AGGAGCTGTC TAAGGTTCAA TTGATAAACA TTAAGTATTC TCTGCACACA GTTGTAAGCA GAGGCATGTA CTTGTTAAAG
CGAGGAAGCA AAGCCCTCAA TTAAACTAAA CTTTCTTTCC ACTAGATGTA AATCAGACTT TATTTGTTTG AAATTCAACA
TAATTACTTG TGACTTTGAG TGAAATGATC AGTTGCAGAT GTTCATATGG ACTGATTGAC GAGTATGGAG CGAGTATCAT
TCAGATTTCA CTTAAAGTAG TCTAACTTAG TACCTTTGGA AGAGAATTTT TGTCATGGAA CAAATACTGT GCCTCTGTAA
TGATAGTAAC ACTGCTACTG TAGAAATCAT CTTTACAATT TCTGGAAATA AGTTTATATT TCAATGAAAG CCATCTAGTG
GTTTTGGACA ATGGGAGTTC TGTTTCCGGG GTCATGAATC TCTGCATAGA AGACTGTTGA TTGTGGCAGC ACGGAATTAG
AATTTTACGT CACTTACTTG TCTTTATTTA CTTATTTCCA TAACATTATA GGTGGGTTAA CTCTGCCATC AGTGTGGTCT
TTTTCTATGC TTACTAATGT CAGTAGCTGT GTTTATCATA TAGAGTTATG GGTATCATTA TGTTTGGATT ATTTTGTGAA
ATATCAAGTG TTTATTTGTG ATGCTCTTTT TATGGAGTTA TATCACCCAT TGTAAGTTTT CAAGGTAGAT GACGCAGGCA
AATGGCTAGG GGATTTATCT TGCCATGAAG ATGAATACAT TTTTTTTCTT ACTACTCAAG GATCAATTTC TATATTATGA
GCGATGCGAA TTATATTAGC CATCTAATTT TTTAATGTTA GTACTATCTG TTTTCCCTTC TCAAATTTAT AACACATTTC
TTTTACACTG TCTCGGTGTA TGCTGCATGC TGCGGGTCAA TTATACTTTA GCTTTTTAGC TTTAGTTGCT AAGACCTCCT
TGCTTATTTA ATCCTTACGA CATCCATGAT GAGAATATCT GTTATTGATT GATTTTGTTA GTTTGAAGGC AAATTTTTCT
ACTGTTTTCT CTCCAGTTTG TCAGAATCCG ATGGGAGATG CTGCTGCTTT GTAGTATCAA CCTTTTCCTG CAGCTTACCC
CTTATTCAAA TTGATTTGAT CAAAATATAT GACATCTAAC TAAATTCAGA TGTATATTGA ATCAAGCTTA AATTTAACTT
AGATTAAATC TAAATACCAT GAAATACCAT GCAGGCATTT TTGTTGGGGG AAGCAAGGTT GTACATTTCA GACCTGAAAG
AAACTTAAAG TCAATTGCTG AGACATCATC AAACTTGGAT GATCCAACAT CCAACCCATG TCCAACCTTT CCTGACTGTG
GATTCAGACA GCCAAACAGT GGCGTAGTTC TTTCTTGCTT GGACTGCTTC CTTCGAAATG GATCTCTTTA CTGTTTTGAG
TATGAAGTTT CACCATCTGT TTTCCTCACC AAAATAAGGG GTGGCACATG CACTACTGCA TCATCTGACC CATCAGAGAC
TGTTATCCAT CGAGCAATGT ATCTTCTTCA AAACGGCTTT GGTAATTATG ATGTTTTTAA GAACAACTGT GAGGATTTTG
CCCTGTACTG CAAAACAGGT CTTTTGATAC AAGATAGGCA AGGGGTTGGA AGAAGTGGCC AAGCTTCTTC TATCATCGGT
GCCCCATTGG CTGCAATGAT TTCTTCTCCC CTCAAGTTAC TAATGCCAAG TCCTGTTGGT GTTGCTACTG TAACAGCAGG
AATGTACTGC ATGAGCAGAT ATGCGACTGA CATTGGTGTC AGAAGTGATG TGATTAAGGT TCCGGTCGAA GATTTGGCTG
TGAACCTTGG ATGGAATTGT CCTGAGGAGG AGGTCGCTGA AAATGAAACT TCAGACGGAC AGATCATTAC CAGATGATTT
AGCATTGCAC TTCAAACGAA ACTGCTTCGT GTCTCACTGT TACTTGATAC ACCAGTTCAT AGCAGATGTG TCTTCATGCA
TGTTACATCT TCTGTAAGAC AAGACTCAAT GGTTTCTTTC TCATTCCTTG CCGTCATTGG TGTCTGTCTA GTTATTCAAG
TTGTGCATGG GATGAAATTG CAATAATATT AATTACAGTA GTAACTATAA TCTGATGTGT TCCTTTGGAT AATTTTTCTC
TTGATTGACC ATAATGCAAC ATTTACCTAC AATAGTGATT GAACCATCGT CTGCAACATA GAACATCACA TTTGACTATT
TTACGCTATG TTGTTAATCG TGCTTTTGGG TTGAAAGTTG ATCATGTTTA ATTTATCCAG ATAGAAGGCG G

>Vigan.05G123800.01
ACCCTTGTGT ATTACGTTAA TAGTTTAATA CCTAGACACC ATTGTCCACG CCGGGTCAAC TGTTAAGGAG AAGAGTCCAA
AACCATAAAA AAACTAGCCA AAGATTCATC ATTATTAATC ACCATCCGTC CATTCGTAAT CCATGATGAT GATGGCGATC
ATCGTCGTCG TCGCTATCGG TATGTGCCAC AGAAACAACC CTTTAACAAA GGTTGGCATT TGGATTGGGT GAGGGTAGTT
GATGAGAAGG TTACCATCGA TTGCCACACA CATTCCAATT CCACACGCAA TTACGTTTGG TTTTCAGTTA ATTTTCAGAA
CGACAATAAA ATAATATTCT TGCTGTTGAA TAATTAGGAT TGGTGTGGGG CCAAGTCTAA TATAATAAGA AAATTGGCAC
TCTTTCTTTC TGCTCTGCTA TGCTACAACC ACTGAAGCTT GGAGCGGTGT TACAGTGACA GTGGCGAGTT TTAGAGTGAG
AGTGAGAAAT GGGTCTGATT TCTAACAGAG TGGAGAGACA CGAGATCAAG CCTGGCGACC ATATCTACAC CTACAGAGCT
GTTTTCACTT ATTCTCATCA TGGCATTTTT GTTGGGGGAA GCAAGGTTGT ACATTTCAGA CCTGAAAGAA ACTTAAAGTC
AATTGCTGAG ACATCATCAA ACTTGGATGA TCCAACATCC AACCCATGTC CAACCTTTCC TGACTGTGGA TTCAGACAGC
CAAACAGTGG CGTAGTTCTT TCTTGCTTGG ACTGCTTCCT TCGAAATGGA TCTCTTTACT GTTTTGAGTA TGAAGTTTCA
CCATCTGTTT TCCTCACCAA AATAAGGGGT GGCACATGCA CTACTGCATC ATCTGACCCA TCAGAGACTG TTATCCATCG
AGCAATGTAT CTTCTTCAAA ACGGCTTTGG TAATTATGAT GTTTTTAAGA ACAACTGTGA GGATTTTGCC CTGTACTGCA
AAACAGGTCT TTTGATACAA GATAGGCAAG GGGTTGGAAG AAGTGGCCAA GCTTCTTCTA TCATCGGTGC CCCATTGGCT
GCAATGATTT CTTCTCCCCT CAAGTTACTA ATGCCAAGTC CTGTTGGTGT TGCTACTGTA ACAGCAGGAA TGTACTGCAT
GAGCAGATAT GCGACTGACA TTGGTGTCAG AAGTGATGTG ATTAAGGTTC CGGTCGAAGA TTTGGCTGTG AACCTTGGAT
GGAATTGTCC TGAGGAGGAG GTCGCTGAAA ATGAAACTTC AGACGGACAG ATCATTACCA GATGATTTAG CATTGCACTT
CAAACGAAAC TGCTTCGTGT CTCACTGTTA CTTGATACAC CAGTTCATAG CAGATGTGTC TTCATGCATG TTACATCTTC
TGTAAGACAA GACTCAATGG TTTCTTTCTC ATTCCTTGCC GTCATTGGTG TCTGTCTAGT TATTCAAGTT GTGCATGGGA
TGAAATTGCA ATAATATTAA TTACAGTAGT AACTATAATC TGATGTGTTC CTTTGGATAA TTTTTCTCTT GATTGACCAT
AATGCAACAT TTACCTACAA TAGTGATTGA ACCATCGTCT GCAACATAGA ACATCACATT TGACTATTTT ACGCTATGTT
GTTAATCGTG CTTTTGGGTT GAAAGTTGAT CATGTTTAAT TTATCCAGAT AGAAGGCGG

>Vigan.05G123800.01
ATGGGTCTGA TTTCTAACAG AGTGGAGAGA CACGAGATCA AGCCTGGCGA CCATATCTAC ACCTACAGAG CTGTTTTCAC
TTATTCTCAT CATGGCATTT TTGTTGGGGG AAGCAAGGTT GTACATTTCA GACCTGAAAG AAACTTAAAG TCAATTGCTG
AGACATCATC AAACTTGGAT GATCCAACAT CCAACCCATG TCCAACCTTT CCTGACTGTG GATTCAGACA GCCAAACAGT
GGCGTAGTTC TTTCTTGCTT GGACTGCTTC CTTCGAAATG GATCTCTTTA CTGTTTTGAG TATGAAGTTT CACCATCTGT
TTTCCTCACC AAAATAAGGG GTGGCACATG CACTACTGCA TCATCTGACC CATCAGAGAC TGTTATCCAT CGAGCAATGT
ATCTTCTTCA AAACGGCTTT GGTAATTATG ATGTTTTTAA GAACAACTGT GAGGATTTTG CCCTGTACTG CAAAACAGGT
CTTTTGATAC AAGATAGGCA AGGGGTTGGA AGAAGTGGCC AAGCTTCTTC TATCATCGGT GCCCCATTGG CTGCAATGAT
TTCTTCTCCC CTCAAGTTAC TAATGCCAAG TCCTGTTGGT GTTGCTACTG TAACAGCAGG AATGTACTGC ATGAGCAGAT
ATGCGACTGA CATTGGTGTC AGAAGTGATG TGATTAAGGT TCCGGTCGAA GATTTGGCTG TGAACCTTGG ATGGAATTGT
CCTGAGGAGG AGGTCGCTGA AAATGAAACT TCAGACGGAC AGATCATTAC CAGATGA

>Vigan.05G123800.01
MGLISNRVER HEIKPGDHIY TYRAVFTYSH HGIFVGGSKV VHFRPERNLK SIAETSSNLD DPTSNPCPTF PDCGFRQPNS
GVVLSCLDCF LRNGSLYCFE YEVSPSVFLT KIRGGTCTTA SSDPSETVIH RAMYLLQNGF GNYDVFKNNC EDFALYCKTG
LLIQDRQGVG RSGQASSIIG APLAAMISSP LKLLMPSPVG VATVTAGMYC MSRYATDIGV RSDVIKVPVE DLAVNLGWNC
PEEEVAENET SDGQIITR*