GBrowse Details

Vigan.05G118000.01

Basic Information:
Name: Vigan.05G118000.01
Multiple alignment
Variant Information
Position: Chr05:9418127..9426805 (+ strand)
Length: 8679
Functional Information:
Description: Similar to Huntingtin-interacting protein K. [A2Q2W3, Medicago truncatula]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.59,6.80,21.78,14.18,32.84,40.28,19.43,20.06
Arabidopsis thaliana homolog: AT3G06610.1
Automatic updates:
Name: NM_001249262 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527445 (LOC100527445), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:9418127..9418266 (+ strand)
Length: 140
Type: five_prime_UTR
Position: Chr05:9418267..9418451 (+ strand)
Length: 185
Type: CDS
Position: Chr05:9425900..9425966 (+ strand)
Length: 67
Type: CDS
Position: Chr05:9426050..9426130 (+ strand)
Length: 81
Type: CDS
Position: Chr05:9426131..9426805 (+ strand)
Length: 675
Type: three_prime_UTR

>Vigan.05G118000.01 class=Sequence position=Chr05:9418127..9426805 (+ strand)
TAGGGCGATC ACAATAAGGG AAGAGGGAGC AGCGCCATTG TTCCTATTGT GGAGACTTTG AATTTTGTCC GAGTGGGTGG
GTTAGGGCAT AGTAGAGCAA AGGGAAGAAG AGAAGGGTGG TGTTAGGGTT TGGAGCAACA ATGGAGGGTG GAGAGGAGGG
AGTGGAGATG GTGGTGGACT CGAAGGACTT ACAGCAACAG AGTAAAGCCT TGGACAAGCT CACTGACCGT GTCGAGGATC
GCCAATTGGA CTCTACTCGC GTCCAGGAGG CAATGGCTTC CATCGCTGCT TCTGCTGAAG CTGATCGCAA TGCCATGCGC
ATCAGGTCAC CTCATCTTCA TTCTCAATGC TTGCTATGCA TCTAAAATCG ATGCCAGCTT TGACTTCATG CATTATAATG
TATACTATGT GGCCTAGGGT TTATGATTGT TAAGTTTTTA CTCTAAACTA TAAGTAACAT AGGATCAGAT TCGTAGAAAG
TAGAAACTAA GTGATGGTGT TGTACTGTTC CCAAGGTTGT TACTTGAAAT ATATCATGTA GAGGACGTAA GGAGTTCAAT
GTAATGATTT TGAAGTAGAA ACTTATAAAG CAACTTAACC ATGCGTCTTG TAAAACAAAG TTATTTGGGG TGTATAGCTT
TTATCTTAGA AGTATGGAGA AATGTAGAAC TGCAATTGTC AGATGCATTA AATGAGTGAC GAATAATTTA GTGGATTAAT
CAAATGGAAT AAGTTCTGAA GTTGCTCCTT CAATTCCAGT TTCGTTTAAC AATTTAAGCT TATAGGACTT TTCAAACTTT
TCCGTGAGAA TTTGTGGAAT AAAAGTAAAA AAGAACAATG AAATCTGGAT TGTGTGATTT GTATTGACGA TGCAAAACTG
CATATAGATT CATTTGTGTC TTGAAACATA GAAAGTCATT TCAGATAGAC CTCATGATAG AAACATGTGG GTAATTGAAT
TGTATCAAGT TGTGGGATTT AAATCATGAA TAGTAAGATT CTACTAACTA TGCTAAGTTT GGATTTTTTT TCTAACGAAC
TAAAAACCTC ATCCAACTTA AATCTTAAGC ATTAGGTGTA TGCATCTTTG TTGCTTATAT GGAGCTTATT TGACACTTGA
ACAATGTTTC CCTTCTTATC CACTAAATTT GCACGGTGAT TTGTCAGCTT TTCATTTTTT CCATCGAAAT AATACCCACA
AGTGTTTGGG TCGTTTTCTT CCAAAGATTG ACAATATTTC CACCTTTTAT CAGTATTGTT ACTGGCCTTG AAGTTTGATG
GTCCTCAACA TTAGTTGCCT TTATTAAAAC TACTGACATG TAACATACAA TTGAGAAGCA ATATATCAAA GTGAGGACCC
TGGAGTCAAA ATTGAAAAAA CGAGTGAACA CAAATATTTA AACAAAGAGG CAATGATGGC CATAGAGAAC AAGGACTCAA
ATAGAATAGA GAAATGGAAA AGAGGTGGAG AGGAAAGACA ATAGAGTGAA ACAAAGTAGC GCAGAAAGGA ACAGAGAGGT
TTCATGACAA AATTTGATGG TTTGTTCACT AGATACAGTG TTCATCGCTG TTTGGTTTAA TAATATAGAA GTGGAGAGGT
CATTCAACTT AGCTTGTGTG TGAAGGTTAT TCAGGTCCCT TTGTTGAAAA CACTAAACGG TTTTTGAACA GTCAAGACTC
GTCATTTAAT TTTTATTGAA AAAAATACAA TGCCTTTTTT CCATGACCAC CAAGATGTGC ATCTCAAAAG CCGTAGGCTG
CAGTATAAGC TCACAATGTT GTTAATATTT GGTGACAAAC TGCTGAAATT CTGTTATCAT AATGCTATGG CCACTATTAG
ACAACACTTA TTAGCATGGT GTATGGGTGT TCTCCTCCTT AATGCAAGGT CAAATCCCAA ATGACCAATA AAAAGTGAAG
ACAGGTGCAC GGTTGAAATT TACCCTTGAA TTTTCAGAGT TAGTATAGTC CCCACCCCTT CCTCAAATGG CACTGTGATT
TGTGACAAAA TAACCCTGAT GGTCTCTTTA ACGTTAGAAA TCTTAAAGGA GTCATGTGGT TCCTAGTTTT ATATTTCATC
TGCATTATAA TGGATGGATA CTTGTAGCTG CTTACTAATG TTCATTTTCC TAAGCTTTCC TGCACTTTAT ACTGTTTTAT
GTCTTTCTAT TTGTTAGGAT ATTTATCCTA TTTTATCATC ATTATAGTGT GTCAAGGGTT ACCCTATTTA TCATGATTAT
ATTATGTCTA GGATTACCCT ATTTATCATG TATTTGTGTA TCAATTTATT CTTATAAATA GAAGATTGTG AGAGGGATCA
ATCAAGCCCT CTAGAATTAT TTTACAGTTT CAATCTTAAG TTGGTATCAG AGCGGGTCGA TCCCGCTCTG GTTTCTGTCT
CGTAATATAT ATTTGTCCGG CGCCACAGTT CTTTGTCGCC CGCCGCTGCC CGCCGCCGGC CACCGTCAAC CGTCGGCCAC
CGTCGGCCGT CGCCGGCCAC CGTCTCCGGC CACCGTCTCC GGCCACCGTC CGGCCACCGT CACCGCCGGC CACTGCCCGC
CATTGCCGGC CACCGTCGTC CATCACTGTC AAAGTTTCCT TCGTCTAAAC CCTTAGGGTT TTCTTGTTCT TCGTTAGTAC
TATTCGTCTT CTTCAGAAAT GGCGTCTGGC AGTACTCTTT CCTTCTCTGG AAGTCCATCA ATTACCTCCG AGAAGCTAAA
TGGAAAAAAT TATCTATCAT GGTCTGCTGC TGTTGAAATG TGGTTCCTTG GCCAAGGGCA TTATGACCAC CTTGAGCGAG
ATGGAAGCCA TGTGCCTACT GAAAAAGCTG ATCAGTGGAA ACAAGCAGAT TTCCAGTTGT GTGCCCTGTT ATGGCAATCA
GTGGAACCCA AACTTTTTGT ATCTTTGAGG GCTTTCAAAA CTTGTCACTC CTTTTGGAAG AAAGCCCAAA ACATTTATGC
CAACGATATT CAACGTCTCT ATGACACTAC GAATAAACTT GCATCTCTTA AAATGGCAGA CCATGATATG GTGTCCTTCA
TGACTGAAGC CCAATCTGCT GTCGAAGAAC TTAGGATGTT TTTGGAAGTA GATCCATTAG AGGATATAAA AAAGAAACTA
GACAAATTCT ACATGGTGTT GATCCTTCGT GCCCTACATC CCGATTTTGA TCATCTCAGA GATCAACTTC TAACTAGTCA
TGAGGTCCCC TCTATGGAAA CATTGACCAC TCGCCTTCTG CGTGTCCCGG TATCTCAAAC TCAAGAAGCG CATGAACTAG
TGGAACCATC TGTCATGGTT GCCACACGAG GAAGAGGAGG ACGTGGCACT AGAGGAGGAG GACGAGGAGG TCGGGGACGT
ACTCAATGCA CATATTGTAA AAGGATGGGT CATACTCAAG AGAATTGCTA CTCCTTACAT GGTTTCCCTT CCAAAACCGC
CAATATTTCG AAGACTGAAA CTTCCACTTT GAAAACTGAA ACCTCTACTT CTATGTTTTC TGAGGATGAA TATCAAGAGT
ATTTAAGGTT AAAGTCTAAC AGCTTGGCAC AACCATCTCA ATCTCCCAAT ACATCAACAG CCTGCGTTTC TCAATCTATG
GAATGTCAAA ATTCATGGGT AATTGACTCA GGTGCTTCTG ATCACATTTC TGGTAATACC TCTTTGTTCT CATCTATTTC
CTTTCGAGAA AAACCTCATT TCATAACTCT TGCAAATGGA TCTAAAACTT CTTCCAAAGG AGTCGGTCAT GTTTCTTTGT
CTCCCTCCCT CAATCTCAAC TCAGTCCTTT TTGTCCCTAA TTGTCCTTTT AATTTAATTT CCTTAAGCCA GTTGACTAAA
ATGTTAAATT GTTCAATAAC CTTTGATCAT AAATCTTTTG TTATACAGGA GCGTGGTTCG GGGAGACAGA TTGGAGAAGG
ATATGAAGCT GGCGGATTAT ACCATTTTGG ATCTCGTCCA AGGGTGTCTT GTGTTGCTGC TCTTAATCCT AAAGTGCTAC
ATGATCGACT TGGCCATCCT CATTTGTCCA AATTAAAAAA GATGTGTCCT GAACTTAGTG GTCTCCAAAC CTTAGAATGT
GAGTCATGTC AATTAGGAAA ACATGTTAGA TCTTCCTTTC CTAAAAGGTC TCAATCAATA TGTAATTCTA GTTTTTCCAT
CATCCATTCT GATATATGGG GACCTAGTCG TATCTCCTCC TTTGGTTATA GATATTTTGT TACCTTTATT GATGAATATT
CAAGATGTAC TTGGGTTTAT CTTATGAAAA ATCGTTCTGA ATTGTTAGCT ATCTTTACAT CCTTTTTGAA TGAAATCAAG
AATCAATTTG GTCAAGTAAT CAAAATATTA AGAAGTGATA ATGCCAAAGA GTATTTTTCA TCCTCCTTTT CTGCCATCTT
GAGTTCCCAT GGTATCTTAC ATCAGTCTAC TTGTCCTCAT ACACCACAGC AAAATGGTAT AGCAGAACGA AAAAATAGAC
ACTTGGTTGA AACTGCTCGT ACCCTTTTGC TTGGTGCCCA TATTCCTGTC CATCACTGGG GGGATGCCAT CTTAACTGCA
TGTTATCTTA TTAATAGGAT GCCCTCCTCC TCTCTTGATA ATAAAGTCCC TTTCTCCATT TTGTTTCCTA ATGATCCTCT
CTTTCATACA TCTCCCCGAG TGTTTGGCTG TGTATGTTTT GTTCATGACA TGTCTCCAGG ACTAGACAAA CTCTCCGCTC
GCGCTCTCAA ATGTGTCTTC TTAGGCTATT CTCGACTTCA AAAAGGATAT CGGTGTTACT CTCCTGAAAC TAAGAAGTAT
TACATGTCTG CCAATGTCAC ATTCTTTGAA CAGACTCCTT ACTTCTCTCC ATCTGTTCAG GATGTTTCTA TCCTCCAGCA
GGTCCTTCCT ATTCCAATGG TTGAGTCAAA TAGCTCCACT GTTTCTGTCA TTCCCAGTCA TGATCACAAT CCTTCTACAC
CTGTTTCTCC ACATACTGAG ATCATCCCAC ACAGGGCCCC AATGGATAGT CCACCTCCCC AAGACAATGG TGAATCTCCT
ACTTCAGATT CTTCTCCCTC GTCACCTCCT CCCACGCCTC CTGGTGCAAA TGATTCAGCA TGGCCTATTG CCCTCAGAAA
AGGTACTCGT TCCACTCGGA ACCCTCATCC CATTTATAAT TTTCTAAGCT ATCATCGATT GTCGCCCTCC TATTTTTCTC
TTTTATCCTC AATGTCCTCT GTTGTTATAC CCAAGAATGT GAAAGAAGCA CTTGATCATC CTGGATGGCG ACAAGCTATG
ATTGCAGAAA TGCAGGCTCT TGACCACAGT AATACTTGGG AGCTGGTGCC CCTTCCCCCA GGAAAAAAGG CGGTTGGTTG
TCGATGGGTG TATGCAGTTA AAGTTGGCCC TGATGGTGAA ATTGATCGGC TCAAAGCTCG GCTTGTTGCA AAAGGTTACA
CTCAGGTTTA TGGTCTTGAT TATTGTGACA CTTTCTCTCC TGTAGCCAAG ATGACTACTA TTCGTCTCTT CTTTGCCATG
GCAGCCATTC GTCACTGGCC ACTTCATCAA TTGGATATCA AGAATGCCTT CCTACATGGT GATCTTGAGG AAGAAGTTTA
TATGGAGCAA CCTCCAGGGT TTGTTGCTCA GGGGGAGTCT GGTATGGTAT GCAAATTGCA TCGATCTCTA TATGGCCTCA
AGCAATCCCC ACGTGCTTGG TTTGGAAAGT TTAGCTCCAT TGTTCAAAAA TTTGGGCTAA AACGCAGTGA AGCAGACCAT
TCAGTTTTTT ATTGTCATTC TTCTCTCGGG AAATGTGTTT ACTTAATAGT ATATGTTGAT GATATTGTCA TTACAGGAAA
TGATGCTGTT GGAATATCTC AACTAAAAGA GTACTTGTGT AGACATTTTC AAACCAAGGA TCTTGGAAGT CTCAAATATT
TCTTAGGCAT TGAAGTAGCG CAATCAAAAG ATGGAGTTGT AATCTCCCAA AGGAAGTATG CTCTTGATAT ATTACAAGAA
ACAAGCATGA TTGATTGTAG ACCGGTAGAC AGTCCCATGG ACCCAAACCA GAAATTAAGG ATAGAAGAAG GTGAATTATT
CTCCGATCCA GAGAGGTATA GGAGGCTGGT TGGCAAACTG ATTTATCTCA CTATTACAAG GCCAGATCTA TCCTTTGCAG
TTGGAGTGGT TAGTCAGTTC ATGCAGGCTC CATGTATTGA CCATTGGAAT GCTCTCATTC GCATTCTAAG GTATGTAAAG
AAGGCTCCCG GGCAAGGATT GTTATATGAA GATAAAGGAA GCATTCATGT CTCTGGGTAT TGTGATGCAG ATTGGGCAGG
TTCACCTATT GATAGACGGT CTACAACAGG ATATTGTGTT TTTCTGGGAG GAAACATTAT TTCATGGAAA AGTAAGAAAC
AGAATGTAGT AGCTCGATCA ACCGCGGAAG CCGAGTATAG GGCAATGGCA TCACTAACAT GTGAACTTAT ATGGGTGAAA
CAATTCCTTC AAGAGGTTAA ATTTTGTGAC ATCCATACTA TGAAGATGTA TTGCGACAAT CAAGCTGCTC TCCACATTGC
ATCAAATCCA GTGTTTCACG AGAGGACTAA ACATATAGAA ATTGATTGTC ATTTTGTTCG TGAAAAGTTG TTGACCAAAG
AAATATGTAC TGAGTTTATT GGGTCAAACG ATCAACTCGC AGATGTATTG ACCAAGTCAT TAAGGGGTCC TCGGATTGAG
TTTATTTGTT CCAAGCTTGG TACATACAAT TTGTATGCTC CAGCTTGAGG GGGAGTGTTA GGATATTTAT CCTATTTTAT
CATCATTATA GTGTGTCAAG GGTTACCCTA TTTATCATGA TTATATTATG TCTAGGATTA CCCTATTTAT CATGTATTTG
TGTATCAATT TATTCTTATA AATAGAAGAT TGTGAGAGGG ATCAATCAAG CCCTCTAGAA TTATTTTACA GTTTCAATCT
TAAGTCTATT ATTCTTTTAC ATATATTGAA AGATCAAGTT GCATTACTAA CAGAAATAGA GTGTGGAAGA GTTTGTTAAG
TTCTAAAGTG ATAATTTAAA TGAGTGAAAT GTGTTTATGT GTGTTTTTGG GTGAGTTTAC AAAATTGATT TTAAAATGAA
GTGATTTATA TGTAGATATT TTATTCTAAA AACAATTCAG TAATAAAACT TACTATACTT TTTTTATCTA ACCAAAAGGT
ACTTAAAGTT GTTCCTACAT AAACTTTGTA CTCAAACTCA ATACCTTAAC TGAGACAAAA CATGTAAACA ATTATCTAAA
TCACATTAGC TGATATTTTA ACGTGATTTA AGTAATTCTA CTTGAATCTA AACGCGCGCT ATGTGAATAA ATAATAGGCT
GAAATAGTCT CTTGGGTCTT TGAAGTTGTA TGTCACCTTT TAGTCAGTCC CTAAAAACAT CGAAATAAAA AATTAGTGCC
CTAAACTAAG ATTTATTAGC TGACTTGACA TGTCATATCT AGCCTATCAT GCCAATTTGA GAACAAGGTG GTAGTTGACG
TGTGGCTTAA TATGTCACAA ACAAACTAAC AGTATTTAGA AGGACCAACA TAATTTTGAA TTTCGATGCT TTTAAAGATT
GGCTAGAGAA GAATACGTAT ACTTTCAAAT ACCTGAAAGA CTAAGCCTGA ATAATGATAA AAAAACTAAA AAGCTGTATG
TTTAATTCTC CATTCCCTCT TTCCTAATCC TGCATTGATA ATCTGTATAA CTTCAATCTC TTAACTGTAG TATATTTTTT
GATCCAATCA CAGGGAGAAA GAATTAGCTG CTGTTAAGAT AAATGCAGCG GATGTTGATA TAATTGCTAA TGAGCTAGAG
GTAACTTCAT CAGATAGTTC ATCAATTCAT CTAGAAATTT TTATTCCAAT GGATTGACAT ACTTTTATTA TTGTTTCAAT
CAGTTGGACA AAAAGGTTGC GGAAAGAACT TTGCGCGAGC ACAAAGGTGA TGCAGTTGCT GCCATTCGGC ACTTGCTTCA
CTAGAGACGT GATAATGAAC AAGGGTCAAT GCTTCAGAAA ATTACTATGC ACCAGCTTAT ATTGTTTTTC ATTTAAATTG
AATCTCAACT GTATTCTGGC CTAATTCATT GAGAAATCAT AAATTTATTG TTGATTAACT GTACCTCTCC TCTCCCTAAT
CTTTCCTGTG CTATAAAAGT AGCCATTATC TAATGGAGAA GTCCTTCATG AAGATCTCCA CGCGTGTCTC ATACACATGC
TTGCTCGTTA AGCACATAGT TGTCAACTTG AAGCCCAGCA TGTGATTTGT TCAAATCAAA TGGTAAAAAG AGCCTTGCTT
TTATGTGCTC TTATGAAATT GTGGTGTGTA ATGCTTGTGC GAATGGCATC TTCTGTTTTG TTTGTTACAT TCAAATTGAT
AAAGTTACAT TTCAGATTTT TGCCATTGTT TCTTGAAATG GACTGTGATG GGATGGAAGT GCCCACATTC TGTGACTTTT
TGCTTATTCA TTAAGATTCC GATAAATTAT GTTACTGGCC CCTTACAATG CCAAGGTCCC CCACCCCCAC TCTATGGTAC
CTTTCCTTTC ACTGTCCATA CGCCATAATA ATGTCTTCAG AGTTATTGTC GTCCCATTTT TTGTTTGTAA CCACTTTTTT
CCACTTTGTG TAATAAAGTT ACAAACCATA TTCATTCAA

>Vigan.05G118000.01
TAGGGCGATC ACAATAAGGG AAGAGGGAGC AGCGCCATTG TTCCTATTGT GGAGACTTTG AATTTTGTCC GAGTGGGTGG
GTTAGGGCAT AGTAGAGCAA AGGGAAGAAG AGAAGGGTGG TGTTAGGGTT TGGAGCAACA ATGGAGGGTG GAGAGGAGGG
AGTGGAGATG GTGGTGGACT CGAAGGACTT ACAGCAACAG AGTAAAGCCT TGGACAAGCT CACTGACCGT GTCGAGGATC
GCCAATTGGA CTCTACTCGC GTCCAGGAGG CAATGGCTTC CATCGCTGCT TCTGCTGAAG CTGATCGCAA TGCCATGCGC
ATCAGGGAGA AAGAATTAGC TGCTGTTAAG ATAAATGCAG CGGATGTTGA TATAATTGCT AATGAGCTAG AGTTGGACAA
AAAGGTTGCG GAAAGAACTT TGCGCGAGCA CAAAGGTGAT GCAGTTGCTG CCATTCGGCA CTTGCTTCAC TAGAGACGTG
ATAATGAACA AGGGTCAATG CTTCAGAAAA TTACTATGCA CCAGCTTATA TTGTTTTTCA TTTAAATTGA ATCTCAACTG
TATTCTGGCC TAATTCATTG AGAAATCATA AATTTATTGT TGATTAACTG TACCTCTCCT CTCCCTAATC TTTCCTGTGC
TATAAAAGTA GCCATTATCT AATGGAGAAG TCCTTCATGA AGATCTCCAC GCGTGTCTCA TACACATGCT TGCTCGTTAA
GCACATAGTT GTCAACTTGA AGCCCAGCAT GTGATTTGTT CAAATCAAAT GGTAAAAAGA GCCTTGCTTT TATGTGCTCT
TATGAAATTG TGGTGTGTAA TGCTTGTGCG AATGGCATCT TCTGTTTTGT TTGTTACATT CAAATTGATA AAGTTACATT
TCAGATTTTT GCCATTGTTT CTTGAAATGG ACTGTGATGG GATGGAAGTG CCCACATTCT GTGACTTTTT GCTTATTCAT
TAAGATTCCG ATAAATTATG TTACTGGCCC CTTACAATGC CAAGGTCCCC CACCCCCACT CTATGGTACC TTTCCTTTCA
CTGTCCATAC GCCATAATAA TGTCTTCAGA GTTATTGTCG TCCCATTTTT TGTTTGTAAC CACTTTTTTC CACTTTGTGT
AATAAAGTTA CAAACCATAT TCATTCAA

>Vigan.05G118000.01
ATGGAGGGTG GAGAGGAGGG AGTGGAGATG GTGGTGGACT CGAAGGACTT ACAGCAACAG AGTAAAGCCT TGGACAAGCT
CACTGACCGT GTCGAGGATC GCCAATTGGA CTCTACTCGC GTCCAGGAGG CAATGGCTTC CATCGCTGCT TCTGCTGAAG
CTGATCGCAA TGCCATGCGC ATCAGGGAGA AAGAATTAGC TGCTGTTAAG ATAAATGCAG CGGATGTTGA TATAATTGCT
AATGAGCTAG AGTTGGACAA AAAGGTTGCG GAAAGAACTT TGCGCGAGCA CAAAGGTGAT GCAGTTGCTG CCATTCGGCA
CTTGCTTCAC TAG

>Vigan.05G118000.01
MEGGEEGVEM VVDSKDLQQQ SKALDKLTDR VEDRQLDSTR VQEAMASIAA SAEADRNAMR IREKELAAVK INAADVDIIA
NELELDKKVA ERTLREHKGD AVAAIRHLLH *