GBrowse Details

Vigan.05G113000.01

Basic Information:
Name: Vigan.05G113000.01
Multiple alignment
Variant Information
Position: Chr05:8919369..8923023 (- strand)
Length: 3655
Functional Information:
Description: Similar to Epsilon 1-COP. [T2DNN5, Phaseolus vulgaris]
GO: Biological Process: retrograde vesicle-mediated transport, Golgi to ER (GO:0006890)
Molecular Function: structural molecule activity (GO:0005198)
Molecular Function: protein binding (GO:0005515)
InterPro: Coatomer, epsilon subunit (IPR006822)
Tetratricopeptide-like helical (IPR011990)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:96.66,90.66,74.35,35.78,100.34,116.0 7,64.72,65.90
Arabidopsis thaliana homolog: AT1G30630.1
Automatic updates:
Name: NM_001249986 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max epsilon1-COP (COPE1), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254128 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max epsilon2-COP (COPE2), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:8919369..8919768 (- strand)
Length: 400
Type: three_prime_UTR
Position: Chr05:8919769..8919865 (- strand)
Length: 97
Type: CDS
Position: Chr05:8921363..8921442 (- strand)
Length: 80
Type: CDS
Position: Chr05:8921759..8921914 (- strand)
Length: 156
Type: CDS
Position: Chr05:8922147..8922282 (- strand)
Length: 136
Type: CDS
Position: Chr05:8922378..8922529 (- strand)
Length: 152
Type: CDS
Position: Chr05:8922603..8922854 (- strand)
Length: 252
Type: CDS
Position: Chr05:8922855..8923023 (- strand)
Length: 169
Type: five_prime_UTR

>Vigan.05G113000.01 class=Sequence position=Chr05:8919369..8923023 (- strand)
GACTGGGCAG AGAATATGAA GCCCGTGTTA TCACTGTTTA GACGTTGATG GCAGGCCCAA TAACAGCCCA GAATACTGAG
AACACGAAAC AAAAAGTGCG AGTGACCGAG CGAGTCTAAG TTCTCTCTCT CTGAATCGTT TGAGTGATCG CTGAGATCTG
AATCTATCTA TGGCGACACC GGACCACCTG TTCAACCTCC GCAACAATTT CTACCTCGGC GCCTACCAAG CCGCCATCAA
CAGCAGCGAC GTCTCCAACC TCTCGGAAGA AGACGCCCTG GAGCGCGACA CCCTCGTCCA CCGCTGCTAC ATCGCCCTTG
GCCAGTTGCA GTTCGTCATT TCCGAGATCC ATGACGATGC TCCCACTCCT CTCCAAGCCG TCAAACTCCT CGCCCTCTAT
TTCTCCTCTC CCGACACCAA GGCATGCTTC CTTCATTTTC TCCTCAATTT CTCGTTTCAT CCATCTCATC CCCTCTCCTC
TCGAAAATTC GCAGGACTCT GCCATCTCCA GCCTCAAGGA ATGGCTCGCG GATCCCGCCA TCGGAAACAA CCCCACTCTC
AGGCTCGTCG CCGGTCTCGT CTTCCTCCAC GAGAATGATT TCAACGAAGC ACTTAAACAC ACCAATGCCG GAGGGACCAT
GGAACTGTAT AACTCTTCTC TCTCTTTTTT CTCTTGTTTT TATTTTAATT ATGTCGTTTC GTTATTGTAA TTGTTTTTAT
GTTTTTTTTT TTTGCTTTCA GGCACGCATT GAATGTTCAG ATCTTCATTA AGATGCATAG GTCGGATTAC GCGGAGAGGC
AGCTGCGGAT CATGCAGCAG ATTGATGAGG ATCACACTCT CACTCAACTG GCCAATGCGT GGCTCGATTT GGCTGTGGTA
TTAATTAATT AATTAATTTA TGATAGTTGT TGTGATAAGA AATTAGGAAT TATAATTGTT GGAGATGTGA TATGTGATCA
AATTCAAGTA CGAAAGTGAT AGATTCTTCT ACTTTCAAGC TGATTATGTA AGATTGAGTT AGGATTAACA GCTAAGTAGA
ATAATAGTAA AAGAGTGATG AAATTTGGTG TGTTTTATTG ATGGGTTTGG CCGAATGGTG GTGGATCAGG GAGGGTCGAA
GATTCAGGAG GCGTATCTGA TATTCCAAGA TATGTCGGAG AGGTATCAGT CCACCAGTTT GCTTTTGAAT GGCAAGGCGG
TTTGCTGCAT GCACATGGGC AATTTTGACG AAGCAGAGAC CCTTTTGGTT GAAGCGCTGA ACAAGGCACG TTTTACGTAC
TGTTTTTATT CTATGAGTGT TCTCTTCCAT GGATTGGACA TTATAATTGA CTTTTTTTAT TGTGTTTATG ATTTATAAGT
TTTTAACTTG CTGAGTTATT TTCCTAGAAT TTGTAATTGT TATAGGCAGA CACACCATTT TTGGGGAGTA TGTAGGGGAA
GTTAGAGAGA AATAGAAACA TGAGGAGAAG GAAGAGGGAA AAAGTGATAC ACGTGATTAA GCTGTTGTTC TGAAATGGCA
TTTCCATGGT TGATTTGTTG TTTTGGAATA TGAGTGATGA AAATTTGTGT GGCTTATACA GGATGCCAGG GATCCTGAAA
CGCTAGCCAA TCTAGTTGTA TGCTGTCTTC ACCTTGGCAA GCCATCTAAC AAATCATTCA GGTACTTGTT CCGCCAAAAC
CCTTTTCTTC TCTTACATTT AATAGTTATC ACTTATGTGT ATTGAAAATA TCCTATTGGG TGGAATAATG TGGAATATGC
TAGGTGTATT TTTGTAGATG GAGTTATGCC TTCCTAACTT GTTAAAAAAA TTTCACAGCT CTTAAGTTTT AAATGGTGGT
ATTTTTTGAA TGAGAGCTCC AAGATCGTCA CAGATGGAGC AATGTCTTCA ATCCATGTCT TCATTCTTGT TAAAAGCCGA
TGAATACAGT GCTAGAATTT ATATGAATTC GATATTGAAC CAATCAATAT TCCATGGATC ACGGATTTTA AATGCAAACT
TCACCATGAT TCTTAGTTTG GCTTGTTTCT CCCCCAATTT GGAGTGCCTA ACCTTATCAA CAACATATCA ATACTGAATT
TCTCACTCTT AACATAGCCT TTAACAGCTA TAGTAATTAG TGAAGTTAAC ATCAGCTATA TGAAAGAGAG AACATGAATT
GGCCTCAAAT ATGAATTAAA TTTAGTAACT GTTGGAGATC TTTTAAGAGT AGCAACTGAG TAGTGCAAGT TCAAATAGTA
AAATGGTAAT ATCATAAGTC CAAAACTTTA ATAAAATATA TAGAAAATGC ACAACATGTT AGAAATACAC AATACAGATT
TGTTCAATTT AAAGGGTTGA ATAATGTCGT TCAAAACTAT TTTGGAAGTG AACATTGAGC AACCCTTAAT CTAAAAGAAA
GGTGATTTTA AACATTTCAA GTGTATTGAC AAAAATACTG TTATTTACAT TTTGAAATTC GATATTACAA GTAAATTAAT
TTTTGAAACT TCTTTCTTCC TCTGCCCTGT GTTGAACTAA ACAGTTCCTA ACTCCAAATT CCTTTGTAAA AATAGCTTGC
ATCTTCAATC TGTTGTTGTG ACGACATTCC TTAACTTTTA ATAACCTATA TTGCTGGAAG TCTTACGGTG ATTAGAGACA
AGATTAATTT ATAATATGTA AATAAGTGTA AACCTCGCCT TACAAGTCGG TTTTGTGGGT TGAGTTAGGT TTAAACTTCA
CTTTTTAACA TGGTATTAGA GTCATAGTTT AAAGCCTATT CTAACAAGAT TTGTGTTTGT TGGACATGTT CCACTCTCGG
ACTACTCATT AATTTCTAGT CATTGAGATA TATACACCTT AGGGTAGTGT GTAGGAAGTC TCACATCACT TAGAGATAAG
ATTAATTTAT AATATATAAA TAAATGCAAA TTTCATTTTA TAAGTTGATT ATGTAGGATT GAGTTAGGTT TAAAGTCCAT
TGTTTAAAAT GTATATTTTT ACAAGTGACG TTTCTTATTT GATTGAATGT CCCGTTGTAC TTCTGGATTT GTGCTTTTCC
TTTTGAATTT ATTCCTTGCC TTCCGTTTGT CACTTGATCT GGTGTGGTAT TTCTCATTCT TCAAAATCTT CTCCCGTATA
TTTTTTTAAC GATGTATTTG ACTTGTTTTG CTTTGCAGCC AGCTGAAACT TTCTCACGCA GATCATGTAC TCGTCAAGCG
GGTAACATCA GCTGAAGAAA GTTTTGATAG AGCGCTACAA ACATTTTCTT CATGAGTCGA TTATTCAATT TCTTTCGGGA
GTTGAATGGT TTGTGGTCTT CCATGCAATT TTTACACCTT GTCGTGGCCA TTGTATTGGG TTGCGTATCT TAGAACATAA
TCAACTGGGT AATGTGGCAT AGTATTCAAA TTTATAACAT TGGTTTACTG AGTCTTGATG TTGTAAAAGC TACATCTGAC
ATTAAGCAAG TTCATTTACA TCGTATATTT TACTAAAAGA GCAAGAAATG CCAATAGGTA TTTTTGAGTA AACAAGATCA
CTGTTGTGTG GATGGATTGG CGAAGCTGTA TTCTATTCTA TTTTATCCGA AGTTTTGCAT TCTTCTATTT GTATCTCTCA
TCTCAAAATA AAAATATTGT GGTGAATTAG GTATTTACCT ACTAAATTGT GTATA

>Vigan.05G113000.01
GACTGGGCAG AGAATATGAA GCCCGTGTTA TCACTGTTTA GACGTTGATG GCAGGCCCAA TAACAGCCCA GAATACTGAG
AACACGAAAC AAAAAGTGCG AGTGACCGAG CGAGTCTAAG TTCTCTCTCT CTGAATCGTT TGAGTGATCG CTGAGATCTG
AATCTATCTA TGGCGACACC GGACCACCTG TTCAACCTCC GCAACAATTT CTACCTCGGC GCCTACCAAG CCGCCATCAA
CAGCAGCGAC GTCTCCAACC TCTCGGAAGA AGACGCCCTG GAGCGCGACA CCCTCGTCCA CCGCTGCTAC ATCGCCCTTG
GCCAGTTGCA GTTCGTCATT TCCGAGATCC ATGACGATGC TCCCACTCCT CTCCAAGCCG TCAAACTCCT CGCCCTCTAT
TTCTCCTCTC CCGACACCAA GGACTCTGCC ATCTCCAGCC TCAAGGAATG GCTCGCGGAT CCCGCCATCG GAAACAACCC
CACTCTCAGG CTCGTCGCCG GTCTCGTCTT CCTCCACGAG AATGATTTCA ACGAAGCACT TAAACACACC AATGCCGGAG
GGACCATGGA ACTGCACGCA TTGAATGTTC AGATCTTCAT TAAGATGCAT AGGTCGGATT ACGCGGAGAG GCAGCTGCGG
ATCATGCAGC AGATTGATGA GGATCACACT CTCACTCAAC TGGCCAATGC GTGGCTCGAT TTGGCTGTGG GAGGGTCGAA
GATTCAGGAG GCGTATCTGA TATTCCAAGA TATGTCGGAG AGGTATCAGT CCACCAGTTT GCTTTTGAAT GGCAAGGCGG
TTTGCTGCAT GCACATGGGC AATTTTGACG AAGCAGAGAC CCTTTTGGTT GAAGCGCTGA ACAAGGATGC CAGGGATCCT
GAAACGCTAG CCAATCTAGT TGTATGCTGT CTTCACCTTG GCAAGCCATC TAACAAATCA TTCAGCCAGC TGAAACTTTC
TCACGCAGAT CATGTACTCG TCAAGCGGGT AACATCAGCT GAAGAAAGTT TTGATAGAGC GCTACAAACA TTTTCTTCAT
GAGTCGATTA TTCAATTTCT TTCGGGAGTT GAATGGTTTG TGGTCTTCCA TGCAATTTTT ACACCTTGTC GTGGCCATTG
TATTGGGTTG CGTATCTTAG AACATAATCA ACTGGGTAAT GTGGCATAGT ATTCAAATTT ATAACATTGG TTTACTGAGT
CTTGATGTTG TAAAAGCTAC ATCTGACATT AAGCAAGTTC ATTTACATCG TATATTTTAC TAAAAGAGCA AGAAATGCCA
ATAGGTATTT TTGAGTAAAC AAGATCACTG TTGTGTGGAT GGATTGGCGA AGCTGTATTC TATTCTATTT TATCCGAAGT
TTTGCATTCT TCTATTTGTA TCTCTCATCT CAAAATAAAA ATATTGTGGT GAATTAGGTA TTTACCTACT AAATTGTGTA
TA

>Vigan.05G113000.01
ATGGCGACAC CGGACCACCT GTTCAACCTC CGCAACAATT TCTACCTCGG CGCCTACCAA GCCGCCATCA ACAGCAGCGA
CGTCTCCAAC CTCTCGGAAG AAGACGCCCT GGAGCGCGAC ACCCTCGTCC ACCGCTGCTA CATCGCCCTT GGCCAGTTGC
AGTTCGTCAT TTCCGAGATC CATGACGATG CTCCCACTCC TCTCCAAGCC GTCAAACTCC TCGCCCTCTA TTTCTCCTCT
CCCGACACCA AGGACTCTGC CATCTCCAGC CTCAAGGAAT GGCTCGCGGA TCCCGCCATC GGAAACAACC CCACTCTCAG
GCTCGTCGCC GGTCTCGTCT TCCTCCACGA GAATGATTTC AACGAAGCAC TTAAACACAC CAATGCCGGA GGGACCATGG
AACTGCACGC ATTGAATGTT CAGATCTTCA TTAAGATGCA TAGGTCGGAT TACGCGGAGA GGCAGCTGCG GATCATGCAG
CAGATTGATG AGGATCACAC TCTCACTCAA CTGGCCAATG CGTGGCTCGA TTTGGCTGTG GGAGGGTCGA AGATTCAGGA
GGCGTATCTG ATATTCCAAG ATATGTCGGA GAGGTATCAG TCCACCAGTT TGCTTTTGAA TGGCAAGGCG GTTTGCTGCA
TGCACATGGG CAATTTTGAC GAAGCAGAGA CCCTTTTGGT TGAAGCGCTG AACAAGGATG CCAGGGATCC TGAAACGCTA
GCCAATCTAG TTGTATGCTG TCTTCACCTT GGCAAGCCAT CTAACAAATC ATTCAGCCAG CTGAAACTTT CTCACGCAGA
TCATGTACTC GTCAAGCGGG TAACATCAGC TGAAGAAAGT TTTGATAGAG CGCTACAAAC ATTTTCTTCA TGA

>Vigan.05G113000.01
MATPDHLFNL RNNFYLGAYQ AAINSSDVSN LSEEDALERD TLVHRCYIAL GQLQFVISEI HDDAPTPLQA VKLLALYFSS
PDTKDSAISS LKEWLADPAI GNNPTLRLVA GLVFLHENDF NEALKHTNAG GTMELHALNV QIFIKMHRSD YAERQLRIMQ
QIDEDHTLTQ LANAWLDLAV GGSKIQEAYL IFQDMSERYQ STSLLLNGKA VCCMHMGNFD EAETLLVEAL NKDARDPETL
ANLVVCCLHL GKPSNKSFSQ LKLSHADHVL VKRVTSAEES FDRALQTFSS *