GBrowse Details

Vigan.05G109000.01

Basic Information:
Name: Vigan.05G109000.01
Multiple alignment
Variant Information
Position: Chr05:8507076..8512160 (- strand)
Length: 5085
Functional Information:
Description: Similar to PMP, putative. [B9RWJ6, Ricinus communis]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:96.20,65.03,96.89,85.94,95.21,101.32,145.82,85.90
Arabidopsis thaliana homolog: AT3G24160.1
Automatic updates:
Name: NM_001253086 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100817223 (LOC100817223), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:8507076..8507511 (- strand)
Length: 436
Type: three_prime_UTR
Position: Chr05:8507512..8507580 (- strand)
Length: 69
Type: CDS
Position: Chr05:8507996..8508201 (- strand)
Length: 206
Type: CDS
Position: Chr05:8508423..8508528 (- strand)
Length: 106
Type: CDS
Position: Chr05:8510139..8510276 (- strand)
Length: 138
Type: CDS
Position: Chr05:8510364..8510471 (- strand)
Length: 108
Type: CDS
Position: Chr05:8510568..8510641 (- strand)
Length: 74
Type: CDS
Position: Chr05:8510759..8510845 (- strand)
Length: 87
Type: CDS
Position: Chr05:8510936..8511011 (- strand)
Length: 76
Type: CDS
Position: Chr05:8511114..8511209 (- strand)
Length: 96
Type: CDS
Position: Chr05:8511797..8511874 (- strand)
Length: 78
Type: CDS
Position: Chr05:8511989..8512057 (- strand)
Length: 69
Type: CDS
Position: Chr05:8512058..8512160 (- strand)
Length: 103
Type: five_prime_UTR

>Vigan.05G109000.01 class=Sequence position=Chr05:8507076..8512160 (- strand)
AAAGCCCAAA CGAGCCTGTG CTATTGGCTG TTTCATTATT GCAAGAAACA ACAAGCACGT TGCTGAAGTA GAACCTCTGG
ATCTCTCTAT CTTTCTCTCT GCGATGGAGT TTCGCGTTTC CGTTATTTGG AGCGTCGTCC TCGTTGTCTC CTTATTCTGT
CCTCAAATCA GGGTTAGTTT CTCTTTCTCT GTAATCTCTT TAATCTGGCA AGCCCGTACG CACTCGATGG CGGTTTTGAT
CTAACGATTT CCTCTTTCTT TTATTCGGTT GTTTGTGTTA TCGCAGGGTG AGGCTTCTGG TTCACTCACC TTCGTTGATA
GTTCCAGTCA TCAATTCCTT CGCGCCAGAT CATCAAATGA TGAGGTTCCG ATTCTTCTTT TTCTCGTTTC TGCATTTTAT
GTTACATTCC AATTCATCTC GCTGACCGAT GCGAACATCA GTTGTTTAAT TGAATACGGT TCTACCGAGC TTCGATTTGA
GTTGATTTTG AAAATCAGGT GCGTACAAAT TTAAAAATAA ATAAATTAAA ATCCATTTTG GAGTCTTATG AATAAATCAT
GCAATATGAG CCTTCGGCCT AGTTGTTACT GTTGGAAACG TGGGGGGAAG TGACACTTGA CAAATGAATA CGAACTCTCG
TTAGATGTGA GAACTGAATT GCAACATCTT CTCTTGTTTA TATTGTATGA GTTGGAGTCC TATCTAAATT TTTCCAAATG
ATATTTATAA TGACACGGTT TTAACTGTAT TACTGCAACT TATATTATAA TTTTACCTAC ACATTTGTTC ATTTTGGGGA
CATTGATTTC TGTTGAATTT AAAGGTGAAT ATTCTCTTCA CTTTCATCTT TTCCATGTTC CCCTTAGTTT CACGATTGAT
ATTACTGCAT TCTGTTCAAC GCTTAAATCA ATAATGATGA TCTCACTGAG TGGTACAATT CCACTTTGCA GCAACCTTCA
TTCTTGCTTC GGGATGTTAG CGCTCTTGTG TCAGTTTTGC TTGGTTTTGC TCCTCCTTCC ACCCTTTCAG CTGCCAGCTC
ATCCAAGGTC ATTTGAAATC ATTAGTGGTG TTCTGTTTTC ACCACATTAG TCATGTTACA TCGTACTTAT ATTAGGTTTG
ATTGATGATA ATATTTTTTC TTTCTGCAGT TGAACAAGGT TCTGAGTCCT AACCCATTCA AGAGGCCTCG TGCTGTATTT
TTGCTGGAAG TGAATGGAAT CAATGGTCTC TGGCCATCGA TTAACTATAA TAATCAATTT CTATATTATG TCCTCTATTT
CATAAAAATA TAATTGTAGT GAATTATGCA TGCAGGTCTT GGGAAAATTG CTCAGGATAG TCCAATGTTC AGCAATTCAT
TTTGGAGTAT AAATTCAGAT AAAGTTGACA TTGAACTCCC AGGTGAGGCT TTAAAAAGTA CATTTTTGAA AAGAAATAGA
ATATGATGAA AATGGTGGTA GGCATTTACT AATTTTTTGT AAGAAGCATT TCATTTTCAT TTTGTTTAAA TTTATGCAGA
TGAAAGCGAT GTTTCTGTTG TTTCTTTGGA TGATCAACTG GAACTCTGGA CTGACAAAGA AATCAGAGAT TTTGTTAGTT
TTGATTTATA TTATCCATGT CTATGAGCTA TTTCCATATT ATTTGATTAT CACGTCATAC GTGAAAATGA CTTTGTCTTG
TTTTCTTAGT CATCTTTGAT AGATGGATCA TATGTTCCCG ATGCCTTTGT GCCATTAAAT GGAGTGCTTT CCATTCCATT
GGCAAATGGT GCCTCAGTGA ATTTCCGTAT GTCAGAGGTA TGATGAAGAT TTTAAGGTAT ATTTTTCTGC TTAAATGTGA
AGTTGTTAAG ACTGACTGAG GGGTTTCCAC ATGTGCGTTT GCAGAAAGCT GAAAGGATGT TTGTTTTTGG TCTTATGTCT
CTTATGCATG ACGTAAAAAG AGCAATTCAA CTGCATGATG ATTTATCACA GACTACAAAG AGTCCAGCCG AGCTGTTAAT
GGGATGCTTC AATGGCATTA AGGTATGCCA TGTTCTTCTT CACTCACTTT CTTGTTTTTA ACCATTTTTT CCTTTGAATT
TCTGGAATAA CTGACATGTA ACTTGCACTA TTTTCCCAGA AACTGAGTTA GGGCCACTTA AGACAGTTGT GTAGAAATTA
ACCGCAACAG AAAACAGATC TGTATTAGAA ACTCTAGAAT TATGTGTAGA AGATAACTGG TAGTAATTAG TTCTGTATAA
CTGTAGGATG GCAGTTATGT GTAACCAACA AATGCTGGCA ATTATGTATT AGGAGTAAAG TTACAATACT GTCATAATTT
TATAGTTTCC ATCATATTTA TGTGCAGCAT TATCTAATAT ATATATAGTG GTTTATTGGC TTTCCATCAT TTTCCACAAT
ATGCACAATA GCAATGAAAT GGAACACTCA GCAAGAGTGT TTACATGGCT GCATTCTTGG CTAGAGGGGG TGTTCAAAAA
GGTTAAACTG CATTGAATTG TGTGATAGTG GAATTAAACT GAAATATAGT TTTCAGGAAT CGACTGAATT GAAAAGCAAA
GTGAGTAAAT TTGATCTGTA CTGTTTCTAA ACTGTGAACT TTATTTGAAA TATTTAAACT GGACTTTCTT TAACCCAACT
TAACTTGTTC TTTTGCTCTA ATTGAAGTGC ATTGTAAAAT ACTATTTTTC AGATTCAAAT CAACACTTTT CTTATTCTTA
AACTTCATAC TAATTGAATT GAATTGAACT ATGCCCAAAC CAGTTCATTA CACTATGATT TAGATAAAAA AATAAAAAGA
TATTGCAAAG CTACTAGTTT GTTACTTCTA AATCTAAAGA CTGCAGGCTT TTAAGATTTC CAGATCTGGC ATTTTTTCTC
AAAAACTCTT CATGCGGTCA CTGCACTTCT GTATATAGCA ACAGGTTTTA AAAAGAAGAA ATAGCTAATA TAATTCATCT
TGAAGTTGAA TTGCATTTCT ACACACAGTC AATGACTTGA ACTTTTCCAA ATTAAAAGAA TTTGTTTATC TTGTTTTGTT
ATTTGATAAT GTACAACAAC ACAATAACAC TTTTATGTTT GTTTGTTTCG GTTCAGCAGT GCATTAAACT CATTTAACTG
CTATTTTAGT ATTTAATTAA GTATTGGGAA AAATGTGTAG CTAATCTCAT TAAACTCATT AGTAGCAGTT GAATGCAACT
CTGAAAGAGA AACAGTTCTT TCAATACACA GTATTAGAGT CAATTTTCTT CCTAGTACTT TTTCTCAATT TACATGTATC
ACATGTCTTC GAGACATATT TCTCCAATGC TTAGGGTCTC CCCGCATAGT AAATTTTTAA TTCCTAATTT CATTACCATG
ACAAAAGGAG CCTTGATTAC ATTATTACTT TTATTTCTTT ATCTATCTCT ATATGTAAAA ATAAAACAAA AGTAATATTG
CATACTTGAG ACAGTGAGCA TTCCTTTTTT TGCTATTAAG TTTGTGAACA TAACTGATAA TCAATAAAAT ATACACTTAC
TTTTCCACTT TATTCTTCAG TCTATGGCAT AATGCTTTGT TCATATCTAT CTGCGATGTG TTGACTGTTA TTGTTATTGA
GATTTTTTTT TTTGTTGACT AACATGGGCC AGGTTTTGCA AGAGCAATAT GAGACTGAAA GTATTGCTGA GCATGGAATT
GAAGTGCTAT ATGCAACTTT GTCAAAGATA GTTAGTTCAT TGCAGGAAGC ATATAAAGGT GAATTTTGCC AGGCTTAAAT
AATTGTTGTA TGATTTTTTA TTTTACATTA TAGCCTTGCA ATATTGGCAA TGATTTGCTT TAATGTAGAA AACCTAGTCA
AATAACTAGC AGCCTCTTAG CTAATCATTC ATATTCTTCT GATCATCAGA TGTCAGCAAT ATTGATTTAA AAAGTTTATT
TGCTTTATTT TAACCTCTTA ATGATCAATT ACTGAGCAGG TCAAATTGTT GGAATAATCT ACTGTCATGT GGCTACTACA
GAGGAGTTGG AAAAGAAGTT TGATGTAATC TTTACTCCTC ACCACACTGC TCGATGGTTG GCCGAAACAA GTGCACTCAA
TGCAACGTTG CCAGAAGTGG TGTTGGTTAG GAGAACCCTT GCTTGGGTAA CAGGAATTCT ATTGCTCGTT TCAACCCTTA
TGGGGGTAAG TATTAGATAA AAATAAATAG TAATACTATA ATCATATTAT TAGATAAAAA CATGAAAAAG TGAAAGAAAC
ATCTTTTGTG TTTGGTTTAA AATGTCATTA CAGTCTAGCT GAATATTGGA AGATTTTTTA TTTTGATTTC AGCTGGGGCA
GGGTAATTAT TCAGGGAAAT TCAGTGGACA CTGTTATCAG AAGTCAGTTT CTTTCAATTA ACCATGGGTC TCTCTTTGGA
AAGTATGACT CATGAGTGGG ATAATAAATT ACGCAAATAG GTCCTTTAGG ATCCGTCATT TAAGATACAA TGGTGGATTT
GAGATTGATG CATAGAGGAA TCTGTCAAAC GATACAATGG TGGATAAGTA ATGTTAAAAT TGGTGTATAA TATTTTACTA
ATTTATTTGT TTGCTGGCAG ATATGCTACC TCTTGAATAT GCCGCTCACA AGGGACACGC TTCTATATTC TAATGTCAAG
CTTGATTAGG CATGGGTGCG CGAACCAAGA TCAATCTTTT CAACCAACGA AAGGAGAACC CGGCTGCCGT TGAACCTTGT
AATTGGGGGT CTTTTTCTTG ATGCCTCTAA TCTGTGTGCG AGATTATATT AATGTTAAAC CATTAGTTAC TTGTGTTTAA
TGGACCACCG GTGTAGCAAA TTATATTCAT GAATCATTGG AAACTCGTCC AATCAGTCAG GATTTGGGTC TTAGAGAATA
GGGGATTATT GTATTATTGT TTGAATGTGA AGCACTGTAC CCCGTGTTTA GTCAGGGCGT AGATAGTCAT AGATGTGCGA
TTATTCCAAC CATTACAATA ATGGGTGTAA CCTGTGATTG ACATTTTGGT CCAAATAATT TCAATTTTAT TGTAAAATAA
TGAATTTTCA AAGAGACTTG TTTATCTTCT AGTTTCTAAA TAACA

>Vigan.05G109000.01
AAAGCCCAAA CGAGCCTGTG CTATTGGCTG TTTCATTATT GCAAGAAACA ACAAGCACGT TGCTGAAGTA GAACCTCTGG
ATCTCTCTAT CTTTCTCTCT GCGATGGAGT TTCGCGTTTC CGTTATTTGG AGCGTCGTCC TCGTTGTCTC CTTATTCTGT
CCTCAAATCA GGGGTGAGGC TTCTGGTTCA CTCACCTTCG TTGATAGTTC CAGTCATCAA TTCCTTCGCG CCAGATCATC
AAATGATGAG CAACCTTCAT TCTTGCTTCG GGATGTTAGC GCTCTTGTGT CAGTTTTGCT TGGTTTTGCT CCTCCTTCCA
CCCTTTCAGC TGCCAGCTCA TCCAAGTTGA ACAAGGTTCT GAGTCCTAAC CCATTCAAGA GGCCTCGTGC TGTATTTTTG
CTGGAAGTGA ATGGAATCAA TGGTCTTGGG AAAATTGCTC AGGATAGTCC AATGTTCAGC AATTCATTTT GGAGTATAAA
TTCAGATAAA GTTGACATTG AACTCCCAGA TGAAAGCGAT GTTTCTGTTG TTTCTTTGGA TGATCAACTG GAACTCTGGA
CTGACAAAGA AATCAGAGAT TTTTCATCTT TGATAGATGG ATCATATGTT CCCGATGCCT TTGTGCCATT AAATGGAGTG
CTTTCCATTC CATTGGCAAA TGGTGCCTCA GTGAATTTCC GTATGTCAGA GAAAGCTGAA AGGATGTTTG TTTTTGGTCT
TATGTCTCTT ATGCATGACG TAAAAAGAGC AATTCAACTG CATGATGATT TATCACAGAC TACAAAGAGT CCAGCCGAGC
TGTTAATGGG ATGCTTCAAT GGCATTAAGG TTTTGCAAGA GCAATATGAG ACTGAAAGTA TTGCTGAGCA TGGAATTGAA
GTGCTATATG CAACTTTGTC AAAGATAGTT AGTTCATTGC AGGAAGCATA TAAAGGTCAA ATTGTTGGAA TAATCTACTG
TCATGTGGCT ACTACAGAGG AGTTGGAAAA GAAGTTTGAT GTAATCTTTA CTCCTCACCA CACTGCTCGA TGGTTGGCCG
AAACAAGTGC ACTCAATGCA ACGTTGCCAG AAGTGGTGTT GGTTAGGAGA ACCCTTGCTT GGGTAACAGG AATTCTATTG
CTCGTTTCAA CCCTTATGGG GATATGCTAC CTCTTGAATA TGCCGCTCAC AAGGGACACG CTTCTATATT CTAATGTCAA
GCTTGATTAG GCATGGGTGC GCGAACCAAG ATCAATCTTT TCAACCAACG AAAGGAGAAC CCGGCTGCCG TTGAACCTTG
TAATTGGGGG TCTTTTTCTT GATGCCTCTA ATCTGTGTGC GAGATTATAT TAATGTTAAA CCATTAGTTA CTTGTGTTTA
ATGGACCACC GGTGTAGCAA ATTATATTCA TGAATCATTG GAAACTCGTC CAATCAGTCA GGATTTGGGT CTTAGAGAAT
AGGGGATTAT TGTATTATTG TTTGAATGTG AAGCACTGTA CCCCGTGTTT AGTCAGGGCG TAGATAGTCA TAGATGTGCG
ATTATTCCAA CCATTACAAT AATGGGTGTA ACCTGTGATT GACATTTTGG TCCAAATAAT TTCAATTTTA TTGTAAAATA
ATGAATTTTC AAAGAGACTT GTTTATCTTC TAGTTTCTAA ATAACA

>Vigan.05G109000.01
ATGGAGTTTC GCGTTTCCGT TATTTGGAGC GTCGTCCTCG TTGTCTCCTT ATTCTGTCCT CAAATCAGGG GTGAGGCTTC
TGGTTCACTC ACCTTCGTTG ATAGTTCCAG TCATCAATTC CTTCGCGCCA GATCATCAAA TGATGAGCAA CCTTCATTCT
TGCTTCGGGA TGTTAGCGCT CTTGTGTCAG TTTTGCTTGG TTTTGCTCCT CCTTCCACCC TTTCAGCTGC CAGCTCATCC
AAGTTGAACA AGGTTCTGAG TCCTAACCCA TTCAAGAGGC CTCGTGCTGT ATTTTTGCTG GAAGTGAATG GAATCAATGG
TCTTGGGAAA ATTGCTCAGG ATAGTCCAAT GTTCAGCAAT TCATTTTGGA GTATAAATTC AGATAAAGTT GACATTGAAC
TCCCAGATGA AAGCGATGTT TCTGTTGTTT CTTTGGATGA TCAACTGGAA CTCTGGACTG ACAAAGAAAT CAGAGATTTT
TCATCTTTGA TAGATGGATC ATATGTTCCC GATGCCTTTG TGCCATTAAA TGGAGTGCTT TCCATTCCAT TGGCAAATGG
TGCCTCAGTG AATTTCCGTA TGTCAGAGAA AGCTGAAAGG ATGTTTGTTT TTGGTCTTAT GTCTCTTATG CATGACGTAA
AAAGAGCAAT TCAACTGCAT GATGATTTAT CACAGACTAC AAAGAGTCCA GCCGAGCTGT TAATGGGATG CTTCAATGGC
ATTAAGGTTT TGCAAGAGCA ATATGAGACT GAAAGTATTG CTGAGCATGG AATTGAAGTG CTATATGCAA CTTTGTCAAA
GATAGTTAGT TCATTGCAGG AAGCATATAA AGGTCAAATT GTTGGAATAA TCTACTGTCA TGTGGCTACT ACAGAGGAGT
TGGAAAAGAA GTTTGATGTA ATCTTTACTC CTCACCACAC TGCTCGATGG TTGGCCGAAA CAAGTGCACT CAATGCAACG
TTGCCAGAAG TGGTGTTGGT TAGGAGAACC CTTGCTTGGG TAACAGGAAT TCTATTGCTC GTTTCAACCC TTATGGGGAT
ATGCTACCTC TTGAATATGC CGCTCACAAG GGACACGCTT CTATATTCTA ATGTCAAGCT TGATTAG

>Vigan.05G109000.01
MEFRVSVIWS VVLVVSLFCP QIRGEASGSL TFVDSSSHQF LRARSSNDEQ PSFLLRDVSA LVSVLLGFAP PSTLSAASSS
KLNKVLSPNP FKRPRAVFLL EVNGINGLGK IAQDSPMFSN SFWSINSDKV DIELPDESDV SVVSLDDQLE LWTDKEIRDF
SSLIDGSYVP DAFVPLNGVL SIPLANGASV NFRMSEKAER MFVFGLMSLM HDVKRAIQLH DDLSQTTKSP AELLMGCFNG
IKVLQEQYET ESIAEHGIEV LYATLSKIVS SLQEAYKGQI VGIIYCHVAT TEELEKKFDV IFTPHHTARW LAETSALNAT
LPEVVLVRRT LAWVTGILLL VSTLMGICYL LNMPLTRDTL LYSNVKLD*