GBrowse Details

Vigan.05G085100.01

Basic Information:
Name: Vigan.05G085100.01
Multiple alignment
Variant Information
Position: Chr05:6478693..6481419 (+ strand)
Length: 2727
Functional Information:
Description: Similar to Uncharacterized protein. [I1KZU5, Glycine max]
GO: Biological Process: intracellular protein transport (GO:0006886)
Cellular Component: endoplasmic reticulum (GO:0005783)
Cellular Component: integral to membrane (GO:0016021)
InterPro: B-cell receptor-associated 31-like (IPR008417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.96,5.82,8.15,5.51,12.90,18.54,24.2 0,9.77
Automatic updates:
Name: BT090513 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-4N9 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249379 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100526943 (LOC100526943), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249379 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max APG6 domain-containing protein (LOC100526943), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:6478693..6478924 (+ strand)
Length: 232
Type: five_prime_UTR
Position: Chr05:6478925..6479210 (+ strand)
Length: 286
Type: CDS
Position: Chr05:6480396..6480778 (+ strand)
Length: 383
Type: CDS
Position: Chr05:6480779..6481419 (+ strand)
Length: 641
Type: three_prime_UTR

>Vigan.05G085100.01 class=Sequence position=Chr05:6478693..6481419 (+ strand)
AAAATTTTGT CCATGTCTTC GAATTCAATT GTCGTTCTTC TTTTGAAAGG GTCTCGCTTC TCTTCTCTCT GTCTGTCACT
TTTTTCTTTT TTAATTTGTG TGATTCTCCA ATCTGCTGTG ATTGAATATT GATGACAGTG ACGCACAACC TCTCACGGGG
CCCATAAATT TGTTATTTTT CTCTGATCCC CTTTGAATTG TGAGGGTGAA GTGAAAGATC TGAATTACGA AGATGATTCA
GCTTCTGTTC ACGTTGATAT TTTCGGAGGG TGCGATGATA GCTTTGCTGC TGTTCAAGAC CCCGTTGAGG AAGCTTGTGA
TAATGGGGTT GGATCGGTTG AAGCGGGGTC GTGGACCCTT GGTTGTGAAG ACCGTTGCAG GGACCATTCT CGTGGTGCTC
TTGTCGAGTG TGTACAGCAT GGTCAACATT CAGAAGCATG AGATCGAGGA TGGTGGTGCC ATTAATCCCA CCGATCAGGT
TCTCATGGCC AAGCACCTCC TTGAAACAAC ACTCATGGGT ATTTGTCTTC CCTTTTTCTT ATTTTGCTAT CATTTGATTT
GTTCTCTCAA TTTCTGATCT GACTCCTTTG TGTGTAATTA CTTGCATGGA TAATTAAATC AATTTATTCC CTGCGTTAGG
TTTCTTATAT GTTTTGTTGG GTCCTTATTG GAATGTCTAG GTTTCTATTT ATATGCTACT GGTTGATTTC TTTTCTTCCC
TAGTTTTATG TTGGAGCAAC TTGAGTAATG TGACTTTGAG AAAAGGATGA CTTCTTTTGT GGGTATTTTA ACTAGGAATC
ATATGTGTAT GGTTTTCTAT GTTGGGGATT GTTTTTCTAT CACAACTAGA AAGCATTTAG TTGTGCCGTT GTCTGTGGTG
TTAAATTTTT CTGTTCAGGA TTGCCGTTGA TTATGAATGT GAGCTTGTAT GGTCTTATTG TCTGGGAAAT GTTAACAAAC
GAATCTTTGT TTTGTTGACT CCTTTTCTGA GGCATTGGAG TCAAATCCAT GGAGAAATTA CTTTTCTTCC TTCATTTTCT
TTTGTCCACA AGGAACAAAT TGTTTTCACT AGCACTGTGC TAAGTTGGAT CAACATTTTT CAAGCCATCT CAGTCAATGA
ACCGGAATCA TCGGATGTAG ATCAAATGAC TCAATCTATC TAGGTAAATC AGACTAAAGA TACTGATTCT AGATATAAGC
CGTCTCATTT TATCCGACAG TTCAATTCAC TGACTGCATG AACGCGTGAA AAGGGGATCC AATTTGACCG CATGGATGTA
AATGAAGCTC AGCCATCCTG CTGGTTTTAC AGTGCTCAAT CCTAGTGGTT TCTTCTATGG TGTTTTTCTG GCTTCCTGTA
ATCCTCTTTT GTAGCCAAAA ATTCTTACAA TGTGCTCTTT CTTTATACAA TATTTTCAGA AACGAGTTAC TCCTGTTCAA
GAAGCCCCCG GAAGTATCTT ATATGAATTA TATCACGGTT AACATAATTT TCTTTGCTGT CTTCCAAAGA AGTTTTATGC
CATTGATTTA TCATAACCCT GGTCACAGCT TAAAAGCATC ATGACTAGAG TGAAAATGCA GCTTCGATCC AACCAGATAA
TACAGTTCTG ATTTTCTGGA CCTATTTTCT CTGTAATGTT TCTGAAATAT TATACCTGCT CTTTGGTGCT GGTCGTCATT
CATCTTTGGT CAATTATTTG CAGGCGGTAT ACTTTTTCTT GGGCTTATGA TAGACAGACT ACATCATTAC ATAAGAGAAC
TGCGGATTCG AAGAAAGGGC ATGGAAGCTG TCAAGAAACA AAGCAGAGGG TCTGAAGATG GGAAATTTAC CTTTTCAGAA
GAAATGAAAA GCGTGGAGGA AGAAAGAACT AGATTGAGAG CAGAACTTAG GCGCCTAGAA TCTGAACTAC AGTCAAAAAT
TAAAGACGCA GATGTTGCAG AAGCCAATGT ATCTGCTCTG AGAAAACAAT CTGAGGGGTT CCTTCTTGAG TATGATCGCT
TACTTGAGGA AAACCAGAAC CTCCGCAACA AACTACAGTC CTTGGACAGG AAATTGTCAC ATTCAGGTTC TAAGAAGAAT
ATTTAAGTAA CATTGCTAGT AGGAATGGCT TCTTCTTGTA TACTCTTCCG GAGTTCCATG GCAGTTTGTT CACAACAGCT
TGTCAATCCT TGCATGCTTG TTCCTCAAGG AATACGATTT CACTTCTAGT TGAACTTGGA TCAATTTTGT CCTGACAAAT
TGTGAATTTT TTGAGTGATG ACAAGAAATA TAGTGCTGAT TTGTTTTTTC TGCACATATG TAACTTTTGT AACATCTGTT
TTCACTATTC AATAGTGTTT GATGGTATTA AAGTTATCTC TTAGTACTTA ATTTTGATTG TCATGTATCC TATCTTGGTC
CAGAGAGAAA TCTCTTTTTG GCTGTTCACT TATTACTTCT CCATTTCTGG CGTCATGCAT TTGTTCTAAA TCCTCTATAC
ACCCCCCCAC CCCCCAACAA ACACTCTGGT CCATGTAGTT CAAGAAAAAA ATTGCCTGGA CTCAACAAAT TTTCGCAGAC
ATCATTATTT TTTTTTTGGA TTTGGATAAT TTTCTTATGA AAAGGCATTA TGTTGTACTT TGTAATAGGA AAAGACACAT
TATTTATGAG CAAGGTATCT TCACCACAGT ATATTATGAA TGGTGAGTTG TACACAAGAA AGATTATCCT TTGTTCTCAT
AACAGGA

>Vigan.05G085100.01
AAAATTTTGT CCATGTCTTC GAATTCAATT GTCGTTCTTC TTTTGAAAGG GTCTCGCTTC TCTTCTCTCT GTCTGTCACT
TTTTTCTTTT TTAATTTGTG TGATTCTCCA ATCTGCTGTG ATTGAATATT GATGACAGTG ACGCACAACC TCTCACGGGG
CCCATAAATT TGTTATTTTT CTCTGATCCC CTTTGAATTG TGAGGGTGAA GTGAAAGATC TGAATTACGA AGATGATTCA
GCTTCTGTTC ACGTTGATAT TTTCGGAGGG TGCGATGATA GCTTTGCTGC TGTTCAAGAC CCCGTTGAGG AAGCTTGTGA
TAATGGGGTT GGATCGGTTG AAGCGGGGTC GTGGACCCTT GGTTGTGAAG ACCGTTGCAG GGACCATTCT CGTGGTGCTC
TTGTCGAGTG TGTACAGCAT GGTCAACATT CAGAAGCATG AGATCGAGGA TGGTGGTGCC ATTAATCCCA CCGATCAGGT
TCTCATGGCC AAGCACCTCC TTGAAACAAC ACTCATGGGC GGTATACTTT TTCTTGGGCT TATGATAGAC AGACTACATC
ATTACATAAG AGAACTGCGG ATTCGAAGAA AGGGCATGGA AGCTGTCAAG AAACAAAGCA GAGGGTCTGA AGATGGGAAA
TTTACCTTTT CAGAAGAAAT GAAAAGCGTG GAGGAAGAAA GAACTAGATT GAGAGCAGAA CTTAGGCGCC TAGAATCTGA
ACTACAGTCA AAAATTAAAG ACGCAGATGT TGCAGAAGCC AATGTATCTG CTCTGAGAAA ACAATCTGAG GGGTTCCTTC
TTGAGTATGA TCGCTTACTT GAGGAAAACC AGAACCTCCG CAACAAACTA CAGTCCTTGG ACAGGAAATT GTCACATTCA
GGTTCTAAGA AGAATATTTA AGTAACATTG CTAGTAGGAA TGGCTTCTTC TTGTATACTC TTCCGGAGTT CCATGGCAGT
TTGTTCACAA CAGCTTGTCA ATCCTTGCAT GCTTGTTCCT CAAGGAATAC GATTTCACTT CTAGTTGAAC TTGGATCAAT
TTTGTCCTGA CAAATTGTGA ATTTTTTGAG TGATGACAAG AAATATAGTG CTGATTTGTT TTTTCTGCAC ATATGTAACT
TTTGTAACAT CTGTTTTCAC TATTCAATAG TGTTTGATGG TATTAAAGTT ATCTCTTAGT ACTTAATTTT GATTGTCATG
TATCCTATCT TGGTCCAGAG AGAAATCTCT TTTTGGCTGT TCACTTATTA CTTCTCCATT TCTGGCGTCA TGCATTTGTT
CTAAATCCTC TATACACCCC CCCACCCCCC AACAAACACT CTGGTCCATG TAGTTCAAGA AAAAAATTGC CTGGACTCAA
CAAATTTTCG CAGACATCAT TATTTTTTTT TTGGATTTGG ATAATTTTCT TATGAAAAGG CATTATGTTG TACTTTGTAA
TAGGAAAAGA CACATTATTT ATGAGCAAGG TATCTTCACC ACAGTATATT ATGAATGGTG AGTTGTACAC AAGAAAGATT
ATCCTTTGTT CTCATAACAG GA

>Vigan.05G085100.01
ATGATTCAGC TTCTGTTCAC GTTGATATTT TCGGAGGGTG CGATGATAGC TTTGCTGCTG TTCAAGACCC CGTTGAGGAA
GCTTGTGATA ATGGGGTTGG ATCGGTTGAA GCGGGGTCGT GGACCCTTGG TTGTGAAGAC CGTTGCAGGG ACCATTCTCG
TGGTGCTCTT GTCGAGTGTG TACAGCATGG TCAACATTCA GAAGCATGAG ATCGAGGATG GTGGTGCCAT TAATCCCACC
GATCAGGTTC TCATGGCCAA GCACCTCCTT GAAACAACAC TCATGGGCGG TATACTTTTT CTTGGGCTTA TGATAGACAG
ACTACATCAT TACATAAGAG AACTGCGGAT TCGAAGAAAG GGCATGGAAG CTGTCAAGAA ACAAAGCAGA GGGTCTGAAG
ATGGGAAATT TACCTTTTCA GAAGAAATGA AAAGCGTGGA GGAAGAAAGA ACTAGATTGA GAGCAGAACT TAGGCGCCTA
GAATCTGAAC TACAGTCAAA AATTAAAGAC GCAGATGTTG CAGAAGCCAA TGTATCTGCT CTGAGAAAAC AATCTGAGGG
GTTCCTTCTT GAGTATGATC GCTTACTTGA GGAAAACCAG AACCTCCGCA ACAAACTACA GTCCTTGGAC AGGAAATTGT
CACATTCAGG TTCTAAGAAG AATATTTAA

>Vigan.05G085100.01
MIQLLFTLIF SEGAMIALLL FKTPLRKLVI MGLDRLKRGR GPLVVKTVAG TILVVLLSSV YSMVNIQKHE IEDGGAINPT
DQVLMAKHLL ETTLMGGILF LGLMIDRLHH YIRELRIRRK GMEAVKKQSR GSEDGKFTFS EEMKSVEEER TRLRAELRRL
ESELQSKIKD ADVAEANVSA LRKQSEGFLL EYDRLLEENQ NLRNKLQSLD RKLSHSGSKK NI*