GBrowse Details

Vigan.05G071600.01

Basic Information:
Name: Vigan.05G071600.01
Multiple alignment
Variant Information
Position: Chr05:5273875..5276782 (+ strand)
Length: 2908
Functional Information:
Description: Similar to inactive beta-amylase 9. [XP_003542915.1, Glycine max]
GO: Biological Process: polysaccharide catabolic process (GO:0000272)
Biological Process: carbohydrate metabolic process (GO:0005975)
Molecular Function: beta-amylase activity (GO:0016161)
InterPro: Glycoside hydrolase, family 14 (IPR001554)
Glycoside hydrolase, catalytic domain (IPR013781)
Glycoside hydrolase, superfamily (IPR017853)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:377.75,74.50,57.32,43.35,42.63,49.23 ,21.20,58.96
Arabidopsis thaliana homolog: AT5G18670.1
Automatic updates:
Name: NM_001249435 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max inactive beta-amylase-like (BMY1), mRNA.
PubMed ID: 16229973 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:5273875..5274093 (+ strand)
Length: 219
Type: five_prime_UTR
Position: Chr05:5274094..5274327 (+ strand)
Length: 234
Type: CDS
Position: Chr05:5274949..5275434 (+ strand)
Length: 486
Type: CDS
Position: Chr05:5275535..5276413 (+ strand)
Length: 879
Type: CDS
Position: Chr05:5276414..5276782 (+ strand)
Length: 369
Type: three_prime_UTR

>Vigan.05G071600.01 class=Sequence position=Chr05:5273875..5276782 (+ strand)
AAAAAGCGCG TTTTAGCTTC CACATCCTTA TATATGCATC TTGTCCTCAG CTACTTCTGC AATATTCATT ATCTCTTCTT
TCCTTGAATC CCATTTTTTT CTCCGCGATT TCTGTTGGAA ACATTAAGCG GATATCCTGA AAAGACTAGA TTTTCGATTG
TTTGTTGAGC GAGTATTTTG GTGTGATTAT TGCGTTTTCC TTTCTTGTTG TTGTTGGCTA TGGAGGTTTC GGTGATTGGA
AGCTCTCAAG CGAAGCTGGG AGCCTCCGAT TTGGCATCTA GGGAAGTGGG CCTTTGTAAT TTGAAGAATT TCAGGGTTGT
GAACGATAGA GTTAGTTTTG GTCAGAATAA TCGGTGGAAG AAGGCTGGGA TAAGCTTCAC TTTGAGGGCT CATCGGACTG
AACCCGTTAG AGAGGAGAAT AAGCGTTCTG GGCCTGGAAC AAGTTCCAAA ACGGTGAGTT TTTGTGTTTT GTTTTTCACG
TTGTGTATGG TTGAAGAGAG ACTGGGGAAA TTGGGAATTT TATTGTGTTT GGTTCTGAAG GAAATGGTTT ATTAATTAAT
TAATTAATTA ATAATTTAGT TTGACTTCAA CTTTTCGTTT GTTAATTTGA AATTACATGA AATATCAAGG ATTTCTGAAT
TATTTTGATC AGTTGCATAG TTGGAGTAAA TAATGAAGTC AATCATTGAA TTTGTCATCT GGTGAATTTG TGCGGTTTTC
CCTTTTTGTC GTGGATGTGG TATTTTTGAA AAAATAAATC TTGATTCTTG ACATTCTCCT GGGAAATTTC CTTGATAATG
CATAACCTAA TCATCACTGT TAAAGGAGCT ATGGCTTTTT TTTTTTTCCT TTGGTTAGTA TCTGAAGGGG ATTTACATGC
TAGAGGTTTA CTAATTTCTA GATGTCAGTG TTAGGTACTG CATCTGTCTT GGTAACAATT TATTCTTCTA CTTTCATACG
ATTCTTATGC AGTAATAACA CATGTTAGGT AGAAAAGTAC ACTTAGGTTT GTTATATAAT GTCAACCTGG AGGCATTAGA
AAGTAACTGA CATGCTTAAA ATAATATGTT GCAGGTGGAT GGTGTTAGAT TATTTGTGGG GCTGCCCCTA GATGCAGTTT
CTTATGATTG CAATTCAATA AACCATGCTA GAGCCATTGC AGCTGGCCTA AAAGCTTTGA AGCTATTAGG AGTTGAAGGT
GTTGAGCTCC CTATATGGTG GGGAATTGTG GAGAAAGAAA CCATGGGAGA ATATGACTGG TCAGGCTATC TTGCTATTGC
TGAGATGGTC CAGAAAGTGG GTCTCAATCT CCATGTGTCT CTTTGCTTTC ATGGGTCTAA GAAGCCAAAT ATCCCCCTAC
CTAAATGGGT ATCCCAGATT GGTGAATCTC AACCCAATAT TTTCTTCACA GACAAGTCAG GACAGCATTA TAAAGAATGC
CTGTCCTTGG CAGTTGATGA TCTTCCTGTT CTTGATGGAA AGACACCAGT CCAAGTGTAC CAGGCTTTCT GTGAGAGCTT
CAAGTCTTCA TTCTCTCCGT TCATGGGCTC TACGATTACG GTAAATATTT TGCATTCCAG TACCAGATGT ATTCCAATTG
TAATATGCTC TTTCAGATTA TACATGACTG ACAATTTCCT CATCTGTTGC CATATTGCAG AGCATTTCCA TGGGTTTAGG
ACCAGATGGT GAGTTACGTT ACCCCTCTCA TCATCAGCTA CCTAGTAAAA CTCAAGGAGC TGGGGAATTC CAGTGTTATG
ACCAAAACAT GCTTAGCTTT CTCAAGCAAC ATGCTGAAGC ATCTGGAAAT CCTTTGTGGG GGCTTGGTGG TCCACATGAT
GCACCTACCT ATGATCAGTC ACCATACTCC ACTGGCTTCT TTAATGATGG GGCTTCTTGG GAGTCCTCAT ATGGGGTCTT
TTTCCTCTCA TGGTATTCCA ATCAGCTCAT AGCTCATGGA GACTGCCTCC TATCAATGGC ATCTTCTACT TTTGGTGACT
CTGGAGTGAC AATATATGGA AAAATCCCAC TTATGCACTC TTGGTACGGA ACTCGATCTC ATCCTTCAGA GCTAACCGCA
GGGTTCTACA ACACAGCTAA CAATGATGGC TATGAACCAG TTGCACAGAT GTTTGCTAAA AACTCATGCA AAATGATATT
ACCCGGCATG GACCTTTCTG ATGCAAAACA ACCTAAGGAA AACCACTCTA GCCCTGAATT GCTACTTTCT CAAATTATGA
CAGCTTGCAG AAAGCATGAG GTGAAGGTTT CGGGTCAAAA TTCTTCCGAG TCTGGTGTCC CGGGGGGGTT TGAACAAATT
AAGAAGAATC TATCTAGAGA TGAAGTATTG GACTTGTTCA CATATCAGCG AATGGGAGCA TCTTTCTTTT CTCCAGAACA
CTTTCCTTTG TTCACCGAGT TTGTCCGGAG CCTTAAGCAA CCGGAATTGC ACTCCGATGA TCTTCCTACC GAGGAGGAGG
AAGGTGCCGA ATCCACGGTT TTGAGCCATG AATCAAGTGT GAGCATGCAA ACAGCCTAAT GGTTGTAAAT TTGTAATGTA
TGATAATGAT GTATATAACA ATCAGTTATA CCCTTGCATC ACAGTGCATG GGATGAGATT GAGGAATGTT TATTTTGTAA
GCACAATTAT GAGGATCCCT TTTCCTGGTT TATCCTCAAA CACAGACCTT ATATGGTTAT TCCTTATAAT TTAGCTAAGG
TGGGTGGCAG CTACCCTTCT CTCATTTGTG CTCTTGGGCA CATTTATGGT CAATGTTACA TAGCTCCATA AGCTTTTGTT
CTAAACATCT CCTTTCAAGA TATCACTTTA TTATAATTGT ACATAATATT GTACATAATT GTGAAAGATA TCAAATATCT
TCAGTTATTA ATAAAGTTGC TTAGTGTG

>Vigan.05G071600.01
AAAAAGCGCG TTTTAGCTTC CACATCCTTA TATATGCATC TTGTCCTCAG CTACTTCTGC AATATTCATT ATCTCTTCTT
TCCTTGAATC CCATTTTTTT CTCCGCGATT TCTGTTGGAA ACATTAAGCG GATATCCTGA AAAGACTAGA TTTTCGATTG
TTTGTTGAGC GAGTATTTTG GTGTGATTAT TGCGTTTTCC TTTCTTGTTG TTGTTGGCTA TGGAGGTTTC GGTGATTGGA
AGCTCTCAAG CGAAGCTGGG AGCCTCCGAT TTGGCATCTA GGGAAGTGGG CCTTTGTAAT TTGAAGAATT TCAGGGTTGT
GAACGATAGA GTTAGTTTTG GTCAGAATAA TCGGTGGAAG AAGGCTGGGA TAAGCTTCAC TTTGAGGGCT CATCGGACTG
AACCCGTTAG AGAGGAGAAT AAGCGTTCTG GGCCTGGAAC AAGTTCCAAA ACGGTGGATG GTGTTAGATT ATTTGTGGGG
CTGCCCCTAG ATGCAGTTTC TTATGATTGC AATTCAATAA ACCATGCTAG AGCCATTGCA GCTGGCCTAA AAGCTTTGAA
GCTATTAGGA GTTGAAGGTG TTGAGCTCCC TATATGGTGG GGAATTGTGG AGAAAGAAAC CATGGGAGAA TATGACTGGT
CAGGCTATCT TGCTATTGCT GAGATGGTCC AGAAAGTGGG TCTCAATCTC CATGTGTCTC TTTGCTTTCA TGGGTCTAAG
AAGCCAAATA TCCCCCTACC TAAATGGGTA TCCCAGATTG GTGAATCTCA ACCCAATATT TTCTTCACAG ACAAGTCAGG
ACAGCATTAT AAAGAATGCC TGTCCTTGGC AGTTGATGAT CTTCCTGTTC TTGATGGAAA GACACCAGTC CAAGTGTACC
AGGCTTTCTG TGAGAGCTTC AAGTCTTCAT TCTCTCCGTT CATGGGCTCT ACGATTACGA GCATTTCCAT GGGTTTAGGA
CCAGATGGTG AGTTACGTTA CCCCTCTCAT CATCAGCTAC CTAGTAAAAC TCAAGGAGCT GGGGAATTCC AGTGTTATGA
CCAAAACATG CTTAGCTTTC TCAAGCAACA TGCTGAAGCA TCTGGAAATC CTTTGTGGGG GCTTGGTGGT CCACATGATG
CACCTACCTA TGATCAGTCA CCATACTCCA CTGGCTTCTT TAATGATGGG GCTTCTTGGG AGTCCTCATA TGGGGTCTTT
TTCCTCTCAT GGTATTCCAA TCAGCTCATA GCTCATGGAG ACTGCCTCCT ATCAATGGCA TCTTCTACTT TTGGTGACTC
TGGAGTGACA ATATATGGAA AAATCCCACT TATGCACTCT TGGTACGGAA CTCGATCTCA TCCTTCAGAG CTAACCGCAG
GGTTCTACAA CACAGCTAAC AATGATGGCT ATGAACCAGT TGCACAGATG TTTGCTAAAA ACTCATGCAA AATGATATTA
CCCGGCATGG ACCTTTCTGA TGCAAAACAA CCTAAGGAAA ACCACTCTAG CCCTGAATTG CTACTTTCTC AAATTATGAC
AGCTTGCAGA AAGCATGAGG TGAAGGTTTC GGGTCAAAAT TCTTCCGAGT CTGGTGTCCC GGGGGGGTTT GAACAAATTA
AGAAGAATCT ATCTAGAGAT GAAGTATTGG ACTTGTTCAC ATATCAGCGA ATGGGAGCAT CTTTCTTTTC TCCAGAACAC
TTTCCTTTGT TCACCGAGTT TGTCCGGAGC CTTAAGCAAC CGGAATTGCA CTCCGATGAT CTTCCTACCG AGGAGGAGGA
AGGTGCCGAA TCCACGGTTT TGAGCCATGA ATCAAGTGTG AGCATGCAAA CAGCCTAATG GTTGTAAATT TGTAATGTAT
GATAATGATG TATATAACAA TCAGTTATAC CCTTGCATCA CAGTGCATGG GATGAGATTG AGGAATGTTT ATTTTGTAAG
CACAATTATG AGGATCCCTT TTCCTGGTTT ATCCTCAAAC ACAGACCTTA TATGGTTATT CCTTATAATT TAGCTAAGGT
GGGTGGCAGC TACCCTTCTC TCATTTGTGC TCTTGGGCAC ATTTATGGTC AATGTTACAT AGCTCCATAA GCTTTTGTTC
TAAACATCTC CTTTCAAGAT ATCACTTTAT TATAATTGTA CATAATATTG TACATAATTG TGAAAGATAT CAAATATCTT
CAGTTATTAA TAAAGTTGCT TAGTGTG

>Vigan.05G071600.01
ATGGAGGTTT CGGTGATTGG AAGCTCTCAA GCGAAGCTGG GAGCCTCCGA TTTGGCATCT AGGGAAGTGG GCCTTTGTAA
TTTGAAGAAT TTCAGGGTTG TGAACGATAG AGTTAGTTTT GGTCAGAATA ATCGGTGGAA GAAGGCTGGG ATAAGCTTCA
CTTTGAGGGC TCATCGGACT GAACCCGTTA GAGAGGAGAA TAAGCGTTCT GGGCCTGGAA CAAGTTCCAA AACGGTGGAT
GGTGTTAGAT TATTTGTGGG GCTGCCCCTA GATGCAGTTT CTTATGATTG CAATTCAATA AACCATGCTA GAGCCATTGC
AGCTGGCCTA AAAGCTTTGA AGCTATTAGG AGTTGAAGGT GTTGAGCTCC CTATATGGTG GGGAATTGTG GAGAAAGAAA
CCATGGGAGA ATATGACTGG TCAGGCTATC TTGCTATTGC TGAGATGGTC CAGAAAGTGG GTCTCAATCT CCATGTGTCT
CTTTGCTTTC ATGGGTCTAA GAAGCCAAAT ATCCCCCTAC CTAAATGGGT ATCCCAGATT GGTGAATCTC AACCCAATAT
TTTCTTCACA GACAAGTCAG GACAGCATTA TAAAGAATGC CTGTCCTTGG CAGTTGATGA TCTTCCTGTT CTTGATGGAA
AGACACCAGT CCAAGTGTAC CAGGCTTTCT GTGAGAGCTT CAAGTCTTCA TTCTCTCCGT TCATGGGCTC TACGATTACG
AGCATTTCCA TGGGTTTAGG ACCAGATGGT GAGTTACGTT ACCCCTCTCA TCATCAGCTA CCTAGTAAAA CTCAAGGAGC
TGGGGAATTC CAGTGTTATG ACCAAAACAT GCTTAGCTTT CTCAAGCAAC ATGCTGAAGC ATCTGGAAAT CCTTTGTGGG
GGCTTGGTGG TCCACATGAT GCACCTACCT ATGATCAGTC ACCATACTCC ACTGGCTTCT TTAATGATGG GGCTTCTTGG
GAGTCCTCAT ATGGGGTCTT TTTCCTCTCA TGGTATTCCA ATCAGCTCAT AGCTCATGGA GACTGCCTCC TATCAATGGC
ATCTTCTACT TTTGGTGACT CTGGAGTGAC AATATATGGA AAAATCCCAC TTATGCACTC TTGGTACGGA ACTCGATCTC
ATCCTTCAGA GCTAACCGCA GGGTTCTACA ACACAGCTAA CAATGATGGC TATGAACCAG TTGCACAGAT GTTTGCTAAA
AACTCATGCA AAATGATATT ACCCGGCATG GACCTTTCTG ATGCAAAACA ACCTAAGGAA AACCACTCTA GCCCTGAATT
GCTACTTTCT CAAATTATGA CAGCTTGCAG AAAGCATGAG GTGAAGGTTT CGGGTCAAAA TTCTTCCGAG TCTGGTGTCC
CGGGGGGGTT TGAACAAATT AAGAAGAATC TATCTAGAGA TGAAGTATTG GACTTGTTCA CATATCAGCG AATGGGAGCA
TCTTTCTTTT CTCCAGAACA CTTTCCTTTG TTCACCGAGT TTGTCCGGAG CCTTAAGCAA CCGGAATTGC ACTCCGATGA
TCTTCCTACC GAGGAGGAGG AAGGTGCCGA ATCCACGGTT TTGAGCCATG AATCAAGTGT GAGCATGCAA ACAGCCTAA

>Vigan.05G071600.01
MEVSVIGSSQ AKLGASDLAS REVGLCNLKN FRVVNDRVSF GQNNRWKKAG ISFTLRAHRT EPVREENKRS GPGTSSKTVD
GVRLFVGLPL DAVSYDCNSI NHARAIAAGL KALKLLGVEG VELPIWWGIV EKETMGEYDW SGYLAIAEMV QKVGLNLHVS
LCFHGSKKPN IPLPKWVSQI GESQPNIFFT DKSGQHYKEC LSLAVDDLPV LDGKTPVQVY QAFCESFKSS FSPFMGSTIT
SISMGLGPDG ELRYPSHHQL PSKTQGAGEF QCYDQNMLSF LKQHAEASGN PLWGLGGPHD APTYDQSPYS TGFFNDGASW
ESSYGVFFLS WYSNQLIAHG DCLLSMASST FGDSGVTIYG KIPLMHSWYG TRSHPSELTA GFYNTANNDG YEPVAQMFAK
NSCKMILPGM DLSDAKQPKE NHSSPELLLS QIMTACRKHE VKVSGQNSSE SGVPGGFEQI KKNLSRDEVL DLFTYQRMGA
SFFSPEHFPL FTEFVRSLKQ PELHSDDLPT EEEEGAESTV LSHESSVSMQ TA*