GBrowse Details

Vigan.05G062700.01

Basic Information:
Name: Vigan.05G062700.01
Multiple alignment
Variant Information
Position: Chr05:4516368..4521510 (- strand)
Length: 5143
Functional Information:
Description: Similar to PITH domain-containing protein 1-like isoform X2. [XP_004485971.1, Cicer arietinum]
InterPro: Galactose-binding domain-like (IPR008979)
PITH domain (IPR010400)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:15.85,9.03,15.53,11.81,27.28,25.63,10.27,14.94
Arabidopsis thaliana homolog: AT2G25950.1
Automatic updates:
Name: NM_001249916 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305543 (LOC100305543), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:4516368..4517055 (- strand)
Length: 688
Type: three_prime_UTR
Position: Chr05:4517056..4517098 (- strand)
Length: 43
Type: CDS
Position: Chr05:4517724..4517785 (- strand)
Length: 62
Type: CDS
Position: Chr05:4517858..4517966 (- strand)
Length: 109
Type: CDS
Position: Chr05:4518211..4518260 (- strand)
Length: 50
Type: CDS
Position: Chr05:4518342..4518399 (- strand)
Length: 58
Type: CDS
Position: Chr05:4519462..4519539 (- strand)
Length: 78
Type: CDS
Position: Chr05:4520999..4521048 (- strand)
Length: 50
Type: CDS
Position: Chr05:4521136..4521216 (- strand)
Length: 81
Type: CDS
Position: Chr05:4521340..4521423 (- strand)
Length: 84
Type: CDS
Position: Chr05:4521424..4521510 (- strand)
Length: 87
Type: five_prime_UTR

>Vigan.05G062700.01 class=Sequence position=Chr05:4516368..4521510 (- strand)
GTCGTTTCAA AATGCCCGAG TTGGTATATA AGATAAATAA AAAAAAAAGA ATCAATCGGT TTCGGTTTGC ACGGGAAACA
AGTGAAGATG GCGTGCTTAC ACGATCACAG TTGTGAAGAA CATGACTGTT CCTCTAATTG GTCTCTCTAT CAGCACATAG
ATATCTCCAA GGTTTTTCTA TCTCATACAT TGTGAATTTC ATAATTTTCA TTCCAATCAC TGTATATATT ATCTTTAGTT
TTTATTTTAA TTAGTACTGA GATCTTTAAT TCACTGATTT GGTAATATGG TCAGGTATTT GCTTTGAATG AGGCCACACC
AGGTAGTGTT AAATCAGTTT TTAAAGCTTG GGAAGATAGG CTGAATACTT CTGGGGTAAT GCATTCTCCA ATTGTTCGCT
TCAATTTTAG GATTCACTGT TTCTGTATTT TGTATTTAAC TTTTTAGTAA TTGCTTCAAC AGGAACACTT GGAAAGCAAT
GAGGGTGATC CTGAGTTACT TGTATTCATT CCGTAAGTAA TCATGTCTGA CTTATTTTCC GCAGAACTGA TTTTTCCCTA
GTTCTAATAT GATGTATCGA ATGTCTTATT TATTTATTTA TTTTAATAAG CTATTTTTCT TTGGTGTTGT GTTAGTATAT
GCATGGATGG AATGGATTGG TTGTTTATAT TTGTTATGTT TTTACTTTTC ATTTTCAAAT ACTTCCATTT TAATGGCATG
GAATGCTTTG AGAAATTTTT CTTCAAGATG AATTGAAAGT CCAAATTAAT TAAAAATAAG TAAGATGGAC AGCATAAAAG
TAGAAAGATT AATAACCTAT TATCTTAAGA TTTTTTTATT AAAGGGGTGT CCTATTTTTC CATATGAGTT TGTTCATAAC
TCTTTGTTCT CTTCCCTAAA AAAGCTAACA TTTTCAACCA CTTAACTATC TATGTAATTT CAGTAGTATT ACTGGTTCTG
GTTGTTATCT GCATATTTTA TCTGAACATG TAACAGTTAG CTAATTCTGA TTTTATTTTA ACCTTACTAC TGCAACAACA
GAGGCCTTAT CCCATTTAGA ACTACATGGA GCACATTTTG AAACAAAGGG TCACCATTAT GATATATAAG TGATGCTCTA
GTCTCTTATA TGAGTTTGTT CAGGATTTAT TGACATCGAA ACATCTTAGG GTCCTCTAAA AAAGCTAACA GTTTCAACAA
CGTAACCATC TGTGTACTTT TAGTATTATT ACTGGTTCTG GTTCTCCCTT GCAAATATGT GTTGTCTGCA TATTTTATCT
GAGCATCTAA CAATCAGCTT ATTCTGATTT TAATTTAACC TTGCTACTGC AACAGCAGAG GCCTTATCCC AGTTAGGGCT
AGATCGACCA CATTTCGCAA TTAGGCTTAG TTAAAAGAAT GTGTATCAGA CAGTTCAATG ACTTATCCTA CTTCTCTCTA
AGATATTGAA TATTGAATAA GCATTGCCTC TAGGATATTG AATATCGAAT ATCTTACTCT AAGCAAAGCA AAGTTTATAT
ATTTTTGGAT AAAAACAGTC AAATGGAATA TTGAAGGGTG TGAATGAATA AGTATTCTTT AAAATGGGAC TGAATTACAC
AACATGTTTC TAGCAAACAT GTGCTTTGAT GTTAAAAGGG AAAAGAAGAA AACGAAGTGA ATACTTTCTT AATAACTCTA
CTCTTTTTGT GTTCCATGAA TCAGAGACCA TTTGGCATTA ACTTTACCTT TACTGTAAAA AATTCTTTCA ACATTTTAAA
ATACTGTATT AAAAAGAAAC ATAAACGTGT GTTTGTGACA GTGTTTAAGT ATGTCTTGAA TAATGATTAT TTTTACTGTA
AAGCTTTTCC TGTATGTTGC CAATCTTCAT ATTTAGTATG ATCAACTCTC AACTAAAAAA ATTAATGTCC ACAACTTTGC
TGTAACATCT TTCATAAGTT TTTACAGAAA TTATTATGCT TCTATGTGTA GGTTTACTTC AGATGTTAAG ATTAAGAGCA
TATCCATAGT CGGTGGAGCT TATGGAACAA GTCCCTCCAA GATGAGAGTG TAAGTTTTAT GGTTTTGAAG CAGATGTATT
AGGTTGTCCT TTTTTTCACA AGTAATTTAT GGATATAATT CTATTTTATG ATTATAGAAA TTACCAGCCT CTGTGACGCA
AGTTTTTGGT TTGTTGTTGC CTTTGATAAC AACTGAGTTT AAAATGAATG TTGCTTTTGG TTACCATTTA TTATTTGAAA
TATTCCTTCT ATGACATTTA TCACATTTGA TTTTCCCACA TTTGTGATTC TACTTTTCTT TCAAGTACAA CCTATTAAGT
TTGTGTACAT ATTTATGTGG TAGGGCCTTG TTTTAGATAC CATGTTCTCT GTTATACTCT CCTCAACTTG TGTGCTGTTT
GATTGATGTG TTGTTTGCCT GCTTATTAAT GCTATCTTTT GTTAGTATTG TACAACTAAA TTGTTCATAT TCTCAGTTGG
ATATCAGGGC AACTAGTATA AATATCTTAT TCATGATCAT ACCGAATGAA GTTTCTTGTA CATTTTATTT ATTGAGCAAG
AGGAGACTTT GTAAGATGAA ACATGAAAGG ATTTAAACAT ATTTTTTTAA GTCATGTTGG TAATGACGAC AACTCATGAG
TTTTATAATT AAAAGTGATT TCTTTAGATG TATAGTTAAG ATTATTTTTA GACCCTTGTA AGTTTTCCGT ATATCTTTAT
TATTTACAAA TTAATATGTT TAAATTTTAG AGGGACGGGA ATAATACGAA ATTTTTTTGA GGGCGTATTT AATATTTTAG
GAATTTTACG GGGATGCAAA ACGTGTTTTA TCCAATATGA AACTAACAGT AGATGTTTGT TAACCTCTTT CCTATTACTT
ACTTTCGCAT CAAGATAAAT AGATATATCG CACTTAGTAT TTGGGCCCGC AAGGCTTTTA ATATTTGCCA AGTATCCCAT
CTTCAGTGAT AATTCTCGGT GCCACCTCTA TATAACAGTA TGTACTTTGG AAAATAAAAT TTGTATAAAT TGAACTAAAT
GTTCAATTAC AGTACTTTTT TGTGTAAATA TTCTCTTACT CAAAATGGCT GAACAGTTCA ACTTGAATTA GGTTCATCAA
CCGAGAGGGC ATTGACTTTT CAGATGCACA AAGCATGCAA GCCGTTCAGG TATAGTTTCT TTTAAGGTTT TCAAGGAATT
CATTGACAAG TCACCACAAC TTGTATGCAA CAATTATTTT TCTCTTGCAG GAATGGGATT TGGTTGAGAA TATGCAAGGA
GTGTTGGAAT ACCAGACAAG GTAACCCTCA CCTACTTCTC ATTTTAGCTA TTCCATAACT GTGGCCTTTT CTACAAATTC
TTATACCCGA AAATATTGTG AAATATTGAA CAAGGCAACA ATACCCGTGT ATGCTATGCA TTTTTTTCTG TATTTTTACC
GTAGCATATT CCTATACTGT AGCTAACTAA GAAGCGGTAT TGTTTTGTGT CATTGGAGTT CTCTTTTCAG TATTTTCTTT
TAACGCATAT ATACCTTTTG TTAGATATTC TAAATTTCAA AGTGTGGCAA ATATTACATT GCACTTTCCT GAGAGTTTTG
GAGGAGACAT AACGGAAATA CACTACATTG GCTTTAAAGG CGAAGCCACT CAGGTACTTT AACTGATAGG TTGCTTGTTG
TTTATAGTGC AGTGAGATTA TTAACTTTCT TGTTTTTTTG TGTAGATGAA AAGGGATGCC GTTGCCAATA TTGTTTATGA
GCTGTTGCCA AATCCTTCTG ACCACAAGTA AGTATTGAAC TCTTGGCTTT ATTAGATAGT CAATTATCTT CTATATCCTT
CCGTGCCATT CATTTTTAAA ATGGAAGAGG GTAACAAGTT TGTAAGTCCA ATATCATTTC AGAAAAAATA GGCTGGGACA
CAAAAATGAT GTTGGACTCT CCAAATTAGG CATTTTTATC CCAGTATTTG CTTAATTGCA ACATATTTTG TCCTATTAGC
AAATCATTGC CCTCTAGAAA AATTCTTCTT CAACTTCATT GATCTTAGTT TGTATATAGC TTCTGAAATG GCTAGAACCT
GTAAAAATTG GTAAGAGTTC TCTAGGTCAG TTAAGAAAGG CGCCAAATCA AGATTTAAAT GCATTTCTCG GTTGTAAACT
TGTAATGTCC ATCCTTAAAT GTTTCATGCA TGTTTGTTTT GATGTCCATG TGAAGCATAA TTGCCTCATG CATGTGCATC
TCGGGCAGAC TCATCCGCAC CCGTTTCCTT TTTGTGTGTG CAAGTGCATA CCTGTTTATT CATAAGATTG CATGTTTTTG
TACTTTGCAA TGGTTAAGAG CCTAGTATTC ACGAGCTTCA CTTTGGTGTA GTTGTGTATC TTCGTAATTC CTAACACTTG
ATTATTTTGT AGGACACATG CTGAAAGTGG CGGGGGTCTT TCACACATAG AATGAAACAC ATTTACTATT TCTATTTTGT
TTACTTAATA ACCATCGCAA CCCAATCTTG TTCCCCTTGT TTCGATCCAC CTAAGACAAG AAAGTACAGC TGGACCTGGT
TAAATACAAT ACTGTGCTAT GAAATATTTA GTCCTGCAGT CTATGTAAAT TACATATATA CTGTTTATCT GGATGATGAA
TACGACAATC TTAGATATTT TATAGAACAA CTGAAAAACT AATCATTAGC AATTGTTTCT CTCTGCAATT GGATGGATAA
ACCCTTTAGA AAAAGGCAAT GAGAGGGTCG GCTACGTTTT TTAGCTATGA AATTGATGTT GATGCACAAA GGTTGAGATG
CAATTGACTT TGTAAAAGAA GCGAATCTAA TTCAGTTCTA CCTTCTAGCT AAGGAAAGTT GTATGAGGTT ATCATATAAA
TGGAGAAGAA TAATTCACTA TCTTGACTGC AATGCAAGAA AAGTGAGGAA TCTTTTGAAG ATAAGATTTC TTCACTGCTT
GGCAGAAAAA GAAAAACTCT GATAGGAAAT ATGTGGCCAT TTTTTTCGTA GCCCAGTTTT TAGTAAATTA GTATTCAATC
TTTGCATAAA ATAAAAAAAG AGGTGTTGGA ATATATTTTT TTCAGCCCAA ACAATGGCCG TATAATAAGT TATATTAAAA
TGTGTGCATC ATTAGGATTC TAT

>Vigan.05G062700.01
GTCGTTTCAA AATGCCCGAG TTGGTATATA AGATAAATAA AAAAAAAAGA ATCAATCGGT TTCGGTTTGC ACGGGAAACA
AGTGAAGATG GCGTGCTTAC ACGATCACAG TTGTGAAGAA CATGACTGTT CCTCTAATTG GTCTCTCTAT CAGCACATAG
ATATCTCCAA GGTATTTGCT TTGAATGAGG CCACACCAGG TAGTGTTAAA TCAGTTTTTA AAGCTTGGGA AGATAGGCTG
AATACTTCTG GGGAACACTT GGAAAGCAAT GAGGGTGATC CTGAGTTACT TGTATTCATT CCGTTTACTT CAGATGTTAA
GATTAAGAGC ATATCCATAG TCGGTGGAGC TTATGGAACA AGTCCCTCCA AGATGAGAGT GTTCATCAAC CGAGAGGGCA
TTGACTTTTC AGATGCACAA AGCATGCAAG CCGTTCAGGA ATGGGATTTG GTTGAGAATA TGCAAGGAGT GTTGGAATAC
CAGACAAGAT ATTCTAAATT TCAAAGTGTG GCAAATATTA CATTGCACTT TCCTGAGAGT TTTGGAGGAG ACATAACGGA
AATACACTAC ATTGGCTTTA AAGGCGAAGC CACTCAGATG AAAAGGGATG CCGTTGCCAA TATTGTTTAT GAGCTGTTGC
CAAATCCTTC TGACCACAAG ACACATGCTG AAAGTGGCGG GGGTCTTTCA CACATAGAAT GAAACACATT TACTATTTCT
ATTTTGTTTA CTTAATAACC ATCGCAACCC AATCTTGTTC CCCTTGTTTC GATCCACCTA AGACAAGAAA GTACAGCTGG
ACCTGGTTAA ATACAATACT GTGCTATGAA ATATTTAGTC CTGCAGTCTA TGTAAATTAC ATATATACTG TTTATCTGGA
TGATGAATAC GACAATCTTA GATATTTTAT AGAACAACTG AAAAACTAAT CATTAGCAAT TGTTTCTCTC TGCAATTGGA
TGGATAAACC CTTTAGAAAA AGGCAATGAG AGGGTCGGCT ACGTTTTTTA GCTATGAAAT TGATGTTGAT GCACAAAGGT
TGAGATGCAA TTGACTTTGT AAAAGAAGCG AATCTAATTC AGTTCTACCT TCTAGCTAAG GAAAGTTGTA TGAGGTTATC
ATATAAATGG AGAAGAATAA TTCACTATCT TGACTGCAAT GCAAGAAAAG TGAGGAATCT TTTGAAGATA AGATTTCTTC
ACTGCTTGGC AGAAAAAGAA AAACTCTGAT AGGAAATATG TGGCCATTTT TTTCGTAGCC CAGTTTTTAG TAAATTAGTA
TTCAATCTTT GCATAAAATA AAAAAAGAGG TGTTGGAATA TATTTTTTTC AGCCCAAACA ATGGCCGTAT AATAAGTTAT
ATTAAAATGT GTGCATCATT AGGATTCTAT 

>Vigan.05G062700.01
ATGGCGTGCT TACACGATCA CAGTTGTGAA GAACATGACT GTTCCTCTAA TTGGTCTCTC TATCAGCACA TAGATATCTC
CAAGGTATTT GCTTTGAATG AGGCCACACC AGGTAGTGTT AAATCAGTTT TTAAAGCTTG GGAAGATAGG CTGAATACTT
CTGGGGAACA CTTGGAAAGC AATGAGGGTG ATCCTGAGTT ACTTGTATTC ATTCCGTTTA CTTCAGATGT TAAGATTAAG
AGCATATCCA TAGTCGGTGG AGCTTATGGA ACAAGTCCCT CCAAGATGAG AGTGTTCATC AACCGAGAGG GCATTGACTT
TTCAGATGCA CAAAGCATGC AAGCCGTTCA GGAATGGGAT TTGGTTGAGA ATATGCAAGG AGTGTTGGAA TACCAGACAA
GATATTCTAA ATTTCAAAGT GTGGCAAATA TTACATTGCA CTTTCCTGAG AGTTTTGGAG GAGACATAAC GGAAATACAC
TACATTGGCT TTAAAGGCGA AGCCACTCAG ATGAAAAGGG ATGCCGTTGC CAATATTGTT TATGAGCTGT TGCCAAATCC
TTCTGACCAC AAGACACATG CTGAAAGTGG CGGGGGTCTT TCACACATAG AATGA

>Vigan.05G062700.01
MACLHDHSCE EHDCSSNWSL YQHIDISKVF ALNEATPGSV KSVFKAWEDR LNTSGEHLES NEGDPELLVF IPFTSDVKIK
SISIVGGAYG TSPSKMRVFI NREGIDFSDA QSMQAVQEWD LVENMQGVLE YQTRYSKFQS VANITLHFPE SFGGDITEIH
YIGFKGEATQ MKRDAVANIV YELLPNPSDH KTHAESGGGL SHIE*