GBrowse Details

Vigan.05G050100.01

Basic Information:
Name: Vigan.05G050100.01
Multiple alignment
Variant Information
Position: Chr05:3542535..3545889 (+ strand)
Length: 3355
Functional Information:
Description: Similar to Uncharacterized protein. [I1M1W3, Glycine max]
GO: Biological Process: mRNA processing (GO:0006397)
Cellular Component: THO complex part of transcription export complex (GO:0000445)
InterPro: THO complex subunit 7/Mft1 (IPR008501)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:43.72,29.64,12.15,11.46,14.81,12.84, 9.79,9.25
Arabidopsis thaliana homolog: AT5G16790.1
Structure :
Position: Chr05:3542535..3542793 (+ strand)
Length: 259
Type: five_prime_UTR
Position: Chr05:3542794..3543387 (+ strand)
Length: 594
Type: CDS
Position: Chr05:3545542..3545673 (+ strand)
Length: 132
Type: CDS
Position: Chr05:3545674..3545889 (+ strand)
Length: 216
Type: three_prime_UTR

>Vigan.05G050100.01 class=Sequence position=Chr05:3542535..3545889 (+ strand)
TTTCCTCCTT CTCCGCACAA GCAGCAGAAA ACTGCTCTTA CTATTCTCCG CGGCGAAGGC GAAGGCATCA GAACACCACC
GCGCACCCAA AAGGTTTATT CTAACCTTAG TACTCCTTTT GCTCCTTTCC TCATTTGTGC ATAAACAGAA CAAAACCTCA
TCAGCCAACA TTCATTTCAC GCTCAATTAT TTAATTTAAA TTTCTCTAAA TTCAGCTCAA TTCTAGCAAA TAATCGTTAT
ATTGATTTCA GGGATCGCTA TGCTGGGAAA GACGAGGAAG GTTTCGACGC GTGGCGAGGC CGTGGCAGCG AACTACGCGT
TTGGCCCTGC AGAAGATGAC GTAATCATCA AACACCGGCT TCTAACGCGC ACGACGACCA CCAGGGGCGA CCCTCCCTTG
AAGAAGCTTC AAAAGAAGTT CACCTCGTTT GTCTCCGAGG TTGATAAAGA CGACGACAAC TACAACGACT GCGAAAAACT
CGCCAGAGCC TTCTTGCAGG AGCTGACGAC CTTCGAGATT CCGCTTCTGA AGAGCAAGGC GATTGTGGAG GCCAACGTTA
GGGAGAAGGA GAATTTCAAC GAGTTGAAGG AAGAGATGAA TCGCCAGATC CTGCAGGCGC AGGCCGACAT TGAGGATCTG
AAAAAGCAGC TGGAGGAGAG CAAGGTCGAG AGGCGGCACA AAGAGGAGTG CGAGGCTATT AGGAAGTTGA TTGCGTTGCA
GCCACCCAGG TCGGAGACAA TGAAGGTTAT TTCGGAGTTG GAGAAGGAAA TTGCGGCGCT GGATACGGAG AACACGGCTG
GTTCCAGGTT GTTGGAGCTC AGGAAGAAGC AATTTGCATT GTTGTTACAT GTGGTATGTG TAATTTTGAA CTCTGCTTAA
AGCTTATGCT GTTATCATAT AATGTCATTG TTGGGGAATT TTGCTTCGGT GAATTATTGG GCCTGTGTAG ATAGATACTT
GATCCTGATA TATTAGGGCT AGAGAATGCA ACCAATGTGC TTATAATGAG AAGCCGTAGT GGTGCTCTAA GTATGGAATA
AAACTTGATG GATGGCATGC CGTTTTGAAA ATTGAACACC CTCTAGATTT GTGTGATATT TAGAATTTGA TTCAAATGAT
ATCAATATTT AGATTCAACC ACTGACATAT ATGAAAAACT GCAGTCACAT TGAAATGTAT CTTTTTGCCA TGCAATTTAA
TTGTCATCAC GTACTCACAA GGTGCGAGTG GTATCTAAGA AATTGCATGC TGTTTTTGGT GGTGAAAAGA GGCCGTGTAC
GGTGTAACGC TTGTAATTTG GGTCTAGTTA TTTTTAGAGA TAGAGTTCGT CTTGCAAGTG AGGAGAAAAG TGAAGAAATA
TAAAAGTGAA GAGAAAAGAA GTAGCAAAAA AGATGCAAAA ACAGATATAG AGAACATTGA ATAAACTGAA AAATAAACAA
AGCTTTTGGG GTAAGAAGTT GATATTTGCC TTGAGCTCAC CTTTAAGACA TTTATACAAA AGGAGGTCTG AAATGGGAAT
GGCTTGCCAC TAGTGACTAG GTTTAGAGTG GATGGTTGGG GGAAGACGGA TGAACTAGTA AATGGACTGC TGGCAAAATG
AGAGCGAAGA AGGAACAATG TTGGAAGACT TGTCAAAGGG AGGGTGTGAG GAGGGGATTG GGTAGGAGGG GGGAGTTGGC
TATGGAGGTG AGGGTAGTTA GACAAGACTT CCCTTGTATC TGGTGAAGCC TTTGGGCCTC TGTTTGGGTT ATGTTTTCTT
ACAGTTTTCT GCATTTGAAT TTCAATAACC AGAGGACCAC CTCTGCATTT CAAGCAGCTT GTCCCCGAAT TATTATTGCT
TGATTTCAGT CTGTAACAGA AGTAGAAGTA GAAGTTGTGA GATGTTAACC CGATGACCAA AACATGGAAC TTATTTGTGC
GCTTTTTTAG AACTTAGAAA AGTAAAGAGA AACAAGAGAA TCAAGGTTTG AAATACACTT GAAAGGGTAA CTTGAGCTAA
CAAAGCTGTA TTTTATGGTT ATTTCATTGG GGGCATGCAA CATTTACATT GGTGATTATG ATGAAAATTG ATAATCGTAT
AAGTACATTA GTGGCTCTGG ACTGGAAAAA GTTGCAATTT TAAAATTTAT CGTGTAAAAT TGCTTTGAAA CTCATAAAGT
TGTTGTGTTG TAAAATGTGA TAATGAAATC ATTCTGCAGT ATTTTTTCCT TGAAGTTTTT TACCAGGGAC TTCAGAATTA
ACATATTTCA ATTTCCCTGA TTGCCCTTGC TATTAAATTG TGACCATGTG ATTTTCTCCA AAAGGGACTC ATGTGATGCA
TTTTGAAAAA GAGTTCCAAT CTCGCACTCC CATCCTGATT CTTTTATGTT ATTGTGTGTT TGATAGGATG GGGAAAGAAA
ATTAAAGGGT TAAAAGTTTT TATAGGTTAA AAATAGAATA TTATATATAT AATAATTATT CTACATTTTA ATTCCCTAAA
GTTAGATGAT GATATTTGTA GGGTAGTTGT TGATATCTTT TAGGCTGTGT ATACTCCTCC GTACGTATTA TAAAAGGAAT
GAAAAATATC AATGTTCATC TTTTATCTTT TCTATAGTTT TAATGACAGT GTTTTAGCTA TTTTAAAATA GTGTAGCCAT
TAGCTTCGTA ACAGTGTTGT GTCATGACAA GTGCTAATCT TTGTTAGCAG TGCAAACTAA AACACTTGTA TTGAAAGAGT
CTGTAGAGTT TCTGCGAAGC TCTTTGGTTC AAGGATATCT TCATATATTA TTGTGTATTT TCTATTTGCC TATAATTTCC
CATGTCAAAT AACTTTGTTC TTCAGTCTAT TCTGTCTCTC ATAGCCTATA TATATATATC TTATGAATTA TAGCCATCAC
TGGGACAGGT GAAATATCTT GTTTAATATT GTAATTGTTA ACTGCAGATT AAGACAAAGC TATGGTTAGT GATATTGTAT
GTGACTGTTG ATGATAATAT TTATCCTGCT TTCTATCCTT CTTGCAGGTG GATGAGTTGC AAAACACAAT TGAGGAAGAG
CAGAAGAGCC TAGTTGAGGA GATGAGAATG GCAACCGAGG AGCTTAAGAA TGGGCTGGAG GACACAAGTG GGGCGGAAGC
AATGGCAATT GACCAGTAAC TAAATCGAAC TTCAATCTTC CTGTTGTAAC ATTTCTTACA TTTCAGCCTT GATTTTTGTA
CCCACAGTCA TTAGGAACCA TATGTAAATG AAAATGAAAC ATCAATATTA TTTTGCTTAT GCTTAGACCT TAGTAAATGC
ATTTTTTATA TTAGAAAGAA AAAGTAATAC TCAGTGCATT TTGTTTGGAT TTTTCTATCA AAATTTGTGT AGCCA

>Vigan.05G050100.01
TTTCCTCCTT CTCCGCACAA GCAGCAGAAA ACTGCTCTTA CTATTCTCCG CGGCGAAGGC GAAGGCATCA GAACACCACC
GCGCACCCAA AAGGTTTATT CTAACCTTAG TACTCCTTTT GCTCCTTTCC TCATTTGTGC ATAAACAGAA CAAAACCTCA
TCAGCCAACA TTCATTTCAC GCTCAATTAT TTAATTTAAA TTTCTCTAAA TTCAGCTCAA TTCTAGCAAA TAATCGTTAT
ATTGATTTCA GGGATCGCTA TGCTGGGAAA GACGAGGAAG GTTTCGACGC GTGGCGAGGC CGTGGCAGCG AACTACGCGT
TTGGCCCTGC AGAAGATGAC GTAATCATCA AACACCGGCT TCTAACGCGC ACGACGACCA CCAGGGGCGA CCCTCCCTTG
AAGAAGCTTC AAAAGAAGTT CACCTCGTTT GTCTCCGAGG TTGATAAAGA CGACGACAAC TACAACGACT GCGAAAAACT
CGCCAGAGCC TTCTTGCAGG AGCTGACGAC CTTCGAGATT CCGCTTCTGA AGAGCAAGGC GATTGTGGAG GCCAACGTTA
GGGAGAAGGA GAATTTCAAC GAGTTGAAGG AAGAGATGAA TCGCCAGATC CTGCAGGCGC AGGCCGACAT TGAGGATCTG
AAAAAGCAGC TGGAGGAGAG CAAGGTCGAG AGGCGGCACA AAGAGGAGTG CGAGGCTATT AGGAAGTTGA TTGCGTTGCA
GCCACCCAGG TCGGAGACAA TGAAGGTTAT TTCGGAGTTG GAGAAGGAAA TTGCGGCGCT GGATACGGAG AACACGGCTG
GTTCCAGGTT GTTGGAGCTC AGGAAGAAGC AATTTGCATT GTTGTTACAT GTGGTGGATG AGTTGCAAAA CACAATTGAG
GAAGAGCAGA AGAGCCTAGT TGAGGAGATG AGAATGGCAA CCGAGGAGCT TAAGAATGGG CTGGAGGACA CAAGTGGGGC
GGAAGCAATG GCAATTGACC AGTAACTAAA TCGAACTTCA ATCTTCCTGT TGTAACATTT CTTACATTTC AGCCTTGATT
TTTGTACCCA CAGTCATTAG GAACCATATG TAAATGAAAA TGAAACATCA ATATTATTTT GCTTATGCTT AGACCTTAGT
AAATGCATTT TTTATATTAG AAAGAAAAAG TAATACTCAG TGCATTTTGT TTGGATTTTT CTATCAAAAT TTGTGTAGCC
A

>Vigan.05G050100.01
ATGCTGGGAA AGACGAGGAA GGTTTCGACG CGTGGCGAGG CCGTGGCAGC GAACTACGCG TTTGGCCCTG CAGAAGATGA
CGTAATCATC AAACACCGGC TTCTAACGCG CACGACGACC ACCAGGGGCG ACCCTCCCTT GAAGAAGCTT CAAAAGAAGT
TCACCTCGTT TGTCTCCGAG GTTGATAAAG ACGACGACAA CTACAACGAC TGCGAAAAAC TCGCCAGAGC CTTCTTGCAG
GAGCTGACGA CCTTCGAGAT TCCGCTTCTG AAGAGCAAGG CGATTGTGGA GGCCAACGTT AGGGAGAAGG AGAATTTCAA
CGAGTTGAAG GAAGAGATGA ATCGCCAGAT CCTGCAGGCG CAGGCCGACA TTGAGGATCT GAAAAAGCAG CTGGAGGAGA
GCAAGGTCGA GAGGCGGCAC AAAGAGGAGT GCGAGGCTAT TAGGAAGTTG ATTGCGTTGC AGCCACCCAG GTCGGAGACA
ATGAAGGTTA TTTCGGAGTT GGAGAAGGAA ATTGCGGCGC TGGATACGGA GAACACGGCT GGTTCCAGGT TGTTGGAGCT
CAGGAAGAAG CAATTTGCAT TGTTGTTACA TGTGGTGGAT GAGTTGCAAA ACACAATTGA GGAAGAGCAG AAGAGCCTAG
TTGAGGAGAT GAGAATGGCA ACCGAGGAGC TTAAGAATGG GCTGGAGGAC ACAAGTGGGG CGGAAGCAAT GGCAATTGAC
CAGTAA

>Vigan.05G050100.01
MLGKTRKVST RGEAVAANYA FGPAEDDVII KHRLLTRTTT TRGDPPLKKL QKKFTSFVSE VDKDDDNYND CEKLARAFLQ
ELTTFEIPLL KSKAIVEANV REKENFNELK EEMNRQILQA QADIEDLKKQ LEESKVERRH KEECEAIRKL IALQPPRSET
MKVISELEKE IAALDTENTA GSRLLELRKK QFALLLHVVD ELQNTIEEEQ KSLVEEMRMA TEELKNGLED TSGAEAMAID
Q*