GBrowse Details

Vigan.05G042900.01

Basic Information:
Name: Vigan.05G042900.01
Multiple alignment
Variant Information
Position: Chr05:2933464..2936107 (+ strand)
Length: 2644
Functional Information:
Description: Similar to serine/threonine-protein kinase HT1. [XP_003543042.1, Glycine max]
GO: Biological Process: protein phosphorylation (GO:0006468)
Molecular Function: protein kinase activity (GO:0004672)
Molecular Function: protein serine/threonine kinase activity (GO:0004674)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
InterPro: Protein kinase domain (IPR000719)
Serine-threonine/tyrosine-protein kinase catalytic domain (IPR001245)
Serine/threonine- / dual specificity protein kinase, catalytic domain (IPR002290)
Serine/threonine-protein kinase, active site (IPR008271)
Protein kinase-like domain (IPR011009)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:161.69,97.92,29.13,88.36,13.39,22.90,25.18,42.63
Arabidopsis thaliana homolog: AT5G58950.1
Automatic updates:
Name: NM_001251601 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein kinase (PK6), mRNA.
PubMed ID: 8439562 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:2933464..2934047 (+ strand)
Length: 584
Type: five_prime_UTR
Position: Chr05:2934048..2934710 (+ strand)
Length: 663
Type: CDS
Position: Chr05:2935014..2935469 (+ strand)
Length: 456
Type: CDS
Position: Chr05:2935564..2935833 (+ strand)
Length: 270
Type: CDS
Position: Chr05:2935834..2936107 (+ strand)
Length: 274
Type: three_prime_UTR

>Vigan.05G042900.01 class=Sequence position=Chr05:2933464..2936107 (+ strand)
TAATGCATGC TTTATTATTA TTCTATATCT TTCTTTTGCT TAAACTTTTC TTCTTTTTCT TTTTCTTAAA TCTCGTTTAC
CTTATCTGCT ATTAGTTTCA TATCGCTGTG ATTCTTTTAC GGATTTTCCC TTGGGGAGGT AATCAAGGCT GTTTCTTTGT
TATCAACACA AATGACTTAT TTTCTTTTAC TTTTTTGTAT ATTTCATGCT TTCTGTGATC ATTTTACCTT TTTCTTGGAT
GGATGGATTG ATTTGTTGAG ATATTTGTGT GGATTTTTTT CAGGCTTTTA CGGAAGGTGG GTTTTGGCTA AAGGGGGTGC
TTGGATGTTG AGTTTATGGA TGCTCATGTT CTTTTGTTGA ATAATATCTT GTTTTGCCTC TGTCTTCAGC TTTTAATGGA
ACCAATCCTG CCCACTTTTT TTCAAATGTA AAGATCGGGT TTTTGGTTAT TCCTCCCCTC ATTCTGGTCA AAGGGTCTCA
ACCTGGTTTT GAGATTTCTC AGGTAGGGGT GGAGGAGTTT CAGTTTTGTA AGTACAAGAT CTTGATAAAA AAGGTTTTTG
TAGAAAGGAA AAGTTGAGAA TAAGATGGGC GAAGATAGTA ATTCTTGGAT TAGGAGGACA AAGTTTTCAC ACACAGTGTG
CCATCGTTTG GATTCATCTA GATTAGGTCA TGTTCCTATC GGCATTCAGT CAGAGCAAAA ATCAAGCCCT GCCTCAGAGG
TTCAGAGGCA CCCCATAACG AACAGGCAGA GATCTTCGTC ACCATTGCCT GTGACTTTTC TTTCTGAGGC CTTCAGGGAA
GCTAGACATG ATCAGAAGAG GTTCTCCACA CCGAATCCCC AGAGAGAAAA TAGGACTACG GGGAAGGAGT TGAACAAGGA
TTCTCCGGAG ACTAAGGAAT CAAGTTCAAA GTTTCCTTCC CGTAGTCCAA GTAAGAAGGT GAAGTCAAAG CACAGCAAGG
ATGCAGCATG GACCAAGTTT TTGGATAATG GTGGAAGCAA GATTACTGCT GTCGAAACAG CCGAAGAGTG GAATATTGAC
ATGTCTCAGC TGTTTTTTGG CCTAAAGTTT GCTCATGGAG CACATAGCCG ACTTTACCAT GGTGTATATA AGGATGAATC
AGTTGCAGTT AAACTCATTA TGGAACCCGA AGACGATGAA AGTGGAGATT TGGCTTCTCG ATTAGAAAAA CAGTTCGTTA
GAGAAGTTAC CCTCTTATCT CGTCTTCACC ATCAAAATGT TATAAAGGTG ATGGCATTTT GTTTCTTATT TTGTATATGC
TATTTACAAA GTATAAATGC ATAGTCCTGA TGCTGTCTTC AATGCCTTTT GAGTAAGGTT AGTGCATCTG TTGTTCTGCT
CTGATTACCA TGTTCAATTT GAACCTTTAA TCATGTTGAA ATATCAAGTT TTAAAAGTAT GCATACTACC AGTTTATATT
CATCTTTTCT CATTTATTTG GGTTTAATTG TGTTCATCGT ATGATGTTGG GATTATTTAT GAGGATGCTG ATCTGTACCT
GTTTTCTGGT GTGTTTTGAT GTGAGTACAG TTCTCAGCAG CGTGCAGAAA GCCACCTGTT TATTGTATCA TCACAGAATA
TCTTTCGGAA GGTTCCTTGA GGGCATATTT GCATAAGTTG GAGCACCAAA CTATTTCTCT ACAAAAGCTT TTAACTTTTG
CCCTTGACAT TGCTCGGGGT ATGGAATATA TACATTCTCA AGGTGTGATT CATCGAGACC TTAAGCCAGA GAATATCCTC
ATAGGCGAAG GTTGTCGCCT TAAAATTGCT GATTTTGGCA TTGCATGCGA GGAAGCCTCT TGTGACATAC TGGCCGATGA
CCCAGGCACA TACCGTTGGA TGGCACCCGA GATGATCAAA CGTAAATCCT ATGGAAGAAA GGTTGATGTG TACAGTTTTG
GGCTTATCTT ATCGGAGATG TTGACTGGAA ATATTCCATA TGAGGATATG AATCCAATAC AGGCTGCTTT TGCCGTTGTA
AACAAGGTAT GACTCCTTTG TAATTGAAGT CATCAAGCTT TGTAATCAAC ATCTCAGTCC TTGCCTAATG TTTGTGTTAT
GTGGTGTTGT GATTGTTCAG AATTCAAGGC CAGTTATTCC ATCAGACTGT CCAGCTGCTA TGAGAGCTTT GGTTGAGCAG
TGTTGGAGCT TGCAACCAGA TAAGAGGCCT GAATTCTGGC AGATTGTGAA GATATTAGAG CAATTTCAAT CTTCACTTGC
TCGTGATGGA ACCCTTACTC TGCTGCCGAA CCCTTGTTGG GATAATAAAA AAGGGCTTCT TCATTGGATT CAAAAGCTTG
GTCCTGTGCA TCAAAATAGT GGCCCTGTGC CTAAACCCAA GTTCACATGA ATCTTTCAAG TGTCCTGGCT TTTATCTACA
CCAGGTCCGT TGTAATTATA AATCAAAGGT TTGTTTTTGA AGTTCTCTGA ATGTAGTCAC GTTATGACAT TCATGTGATA
GTAAATTGAT TTTTAGGCTT GCACATAAAG GTGAAAGTTT TTTTTTCTTT CTTTTTACCT GTGTGCCTAC ACAACTTATG
AAACTCTTGC TTCGTTTGTC AATCTAGAGA CTTCATACCA AGAAATCTTC ACCCTCTTCC TCTTATGAAT GTTCATAATT
CTTG

>Vigan.05G042900.01
TAATGCATGC TTTATTATTA TTCTATATCT TTCTTTTGCT TAAACTTTTC TTCTTTTTCT TTTTCTTAAA TCTCGTTTAC
CTTATCTGCT ATTAGTTTCA TATCGCTGTG ATTCTTTTAC GGATTTTCCC TTGGGGAGGT AATCAAGGCT GTTTCTTTGT
TATCAACACA AATGACTTAT TTTCTTTTAC TTTTTTGTAT ATTTCATGCT TTCTGTGATC ATTTTACCTT TTTCTTGGAT
GGATGGATTG ATTTGTTGAG ATATTTGTGT GGATTTTTTT CAGGCTTTTA CGGAAGGTGG GTTTTGGCTA AAGGGGGTGC
TTGGATGTTG AGTTTATGGA TGCTCATGTT CTTTTGTTGA ATAATATCTT GTTTTGCCTC TGTCTTCAGC TTTTAATGGA
ACCAATCCTG CCCACTTTTT TTCAAATGTA AAGATCGGGT TTTTGGTTAT TCCTCCCCTC ATTCTGGTCA AAGGGTCTCA
ACCTGGTTTT GAGATTTCTC AGGTAGGGGT GGAGGAGTTT CAGTTTTGTA AGTACAAGAT CTTGATAAAA AAGGTTTTTG
TAGAAAGGAA AAGTTGAGAA TAAGATGGGC GAAGATAGTA ATTCTTGGAT TAGGAGGACA AAGTTTTCAC ACACAGTGTG
CCATCGTTTG GATTCATCTA GATTAGGTCA TGTTCCTATC GGCATTCAGT CAGAGCAAAA ATCAAGCCCT GCCTCAGAGG
TTCAGAGGCA CCCCATAACG AACAGGCAGA GATCTTCGTC ACCATTGCCT GTGACTTTTC TTTCTGAGGC CTTCAGGGAA
GCTAGACATG ATCAGAAGAG GTTCTCCACA CCGAATCCCC AGAGAGAAAA TAGGACTACG GGGAAGGAGT TGAACAAGGA
TTCTCCGGAG ACTAAGGAAT CAAGTTCAAA GTTTCCTTCC CGTAGTCCAA GTAAGAAGGT GAAGTCAAAG CACAGCAAGG
ATGCAGCATG GACCAAGTTT TTGGATAATG GTGGAAGCAA GATTACTGCT GTCGAAACAG CCGAAGAGTG GAATATTGAC
ATGTCTCAGC TGTTTTTTGG CCTAAAGTTT GCTCATGGAG CACATAGCCG ACTTTACCAT GGTGTATATA AGGATGAATC
AGTTGCAGTT AAACTCATTA TGGAACCCGA AGACGATGAA AGTGGAGATT TGGCTTCTCG ATTAGAAAAA CAGTTCGTTA
GAGAAGTTAC CCTCTTATCT CGTCTTCACC ATCAAAATGT TATAAAGTTC TCAGCAGCGT GCAGAAAGCC ACCTGTTTAT
TGTATCATCA CAGAATATCT TTCGGAAGGT TCCTTGAGGG CATATTTGCA TAAGTTGGAG CACCAAACTA TTTCTCTACA
AAAGCTTTTA ACTTTTGCCC TTGACATTGC TCGGGGTATG GAATATATAC ATTCTCAAGG TGTGATTCAT CGAGACCTTA
AGCCAGAGAA TATCCTCATA GGCGAAGGTT GTCGCCTTAA AATTGCTGAT TTTGGCATTG CATGCGAGGA AGCCTCTTGT
GACATACTGG CCGATGACCC AGGCACATAC CGTTGGATGG CACCCGAGAT GATCAAACGT AAATCCTATG GAAGAAAGGT
TGATGTGTAC AGTTTTGGGC TTATCTTATC GGAGATGTTG ACTGGAAATA TTCCATATGA GGATATGAAT CCAATACAGG
CTGCTTTTGC CGTTGTAAAC AAGAATTCAA GGCCAGTTAT TCCATCAGAC TGTCCAGCTG CTATGAGAGC TTTGGTTGAG
CAGTGTTGGA GCTTGCAACC AGATAAGAGG CCTGAATTCT GGCAGATTGT GAAGATATTA GAGCAATTTC AATCTTCACT
TGCTCGTGAT GGAACCCTTA CTCTGCTGCC GAACCCTTGT TGGGATAATA AAAAAGGGCT TCTTCATTGG ATTCAAAAGC
TTGGTCCTGT GCATCAAAAT AGTGGCCCTG TGCCTAAACC CAAGTTCACA TGAATCTTTC AAGTGTCCTG GCTTTTATCT
ACACCAGGTC CGTTGTAATT ATAAATCAAA GGTTTGTTTT TGAAGTTCTC TGAATGTAGT CACGTTATGA CATTCATGTG
ATAGTAAATT GATTTTTAGG CTTGCACATA AAGGTGAAAG TTTTTTTTTC TTTCTTTTTA CCTGTGTGCC TACACAACTT
ATGAAACTCT TGCTTCGTTT GTCAATCTAG AGACTTCATA CCAAGAAATC TTCACCCTCT TCCTCTTATG AATGTTCATA
ATTCTTG

>Vigan.05G042900.01
ATGGGCGAAG ATAGTAATTC TTGGATTAGG AGGACAAAGT TTTCACACAC AGTGTGCCAT CGTTTGGATT CATCTAGATT
AGGTCATGTT CCTATCGGCA TTCAGTCAGA GCAAAAATCA AGCCCTGCCT CAGAGGTTCA GAGGCACCCC ATAACGAACA
GGCAGAGATC TTCGTCACCA TTGCCTGTGA CTTTTCTTTC TGAGGCCTTC AGGGAAGCTA GACATGATCA GAAGAGGTTC
TCCACACCGA ATCCCCAGAG AGAAAATAGG ACTACGGGGA AGGAGTTGAA CAAGGATTCT CCGGAGACTA AGGAATCAAG
TTCAAAGTTT CCTTCCCGTA GTCCAAGTAA GAAGGTGAAG TCAAAGCACA GCAAGGATGC AGCATGGACC AAGTTTTTGG
ATAATGGTGG AAGCAAGATT ACTGCTGTCG AAACAGCCGA AGAGTGGAAT ATTGACATGT CTCAGCTGTT TTTTGGCCTA
AAGTTTGCTC ATGGAGCACA TAGCCGACTT TACCATGGTG TATATAAGGA TGAATCAGTT GCAGTTAAAC TCATTATGGA
ACCCGAAGAC GATGAAAGTG GAGATTTGGC TTCTCGATTA GAAAAACAGT TCGTTAGAGA AGTTACCCTC TTATCTCGTC
TTCACCATCA AAATGTTATA AAGTTCTCAG CAGCGTGCAG AAAGCCACCT GTTTATTGTA TCATCACAGA ATATCTTTCG
GAAGGTTCCT TGAGGGCATA TTTGCATAAG TTGGAGCACC AAACTATTTC TCTACAAAAG CTTTTAACTT TTGCCCTTGA
CATTGCTCGG GGTATGGAAT ATATACATTC TCAAGGTGTG ATTCATCGAG ACCTTAAGCC AGAGAATATC CTCATAGGCG
AAGGTTGTCG CCTTAAAATT GCTGATTTTG GCATTGCATG CGAGGAAGCC TCTTGTGACA TACTGGCCGA TGACCCAGGC
ACATACCGTT GGATGGCACC CGAGATGATC AAACGTAAAT CCTATGGAAG AAAGGTTGAT GTGTACAGTT TTGGGCTTAT
CTTATCGGAG ATGTTGACTG GAAATATTCC ATATGAGGAT ATGAATCCAA TACAGGCTGC TTTTGCCGTT GTAAACAAGA
ATTCAAGGCC AGTTATTCCA TCAGACTGTC CAGCTGCTAT GAGAGCTTTG GTTGAGCAGT GTTGGAGCTT GCAACCAGAT
AAGAGGCCTG AATTCTGGCA GATTGTGAAG ATATTAGAGC AATTTCAATC TTCACTTGCT CGTGATGGAA CCCTTACTCT
GCTGCCGAAC CCTTGTTGGG ATAATAAAAA AGGGCTTCTT CATTGGATTC AAAAGCTTGG TCCTGTGCAT CAAAATAGTG
GCCCTGTGCC TAAACCCAAG TTCACATGA

>Vigan.05G042900.01
MGEDSNSWIR RTKFSHTVCH RLDSSRLGHV PIGIQSEQKS SPASEVQRHP ITNRQRSSSP LPVTFLSEAF REARHDQKRF
STPNPQRENR TTGKELNKDS PETKESSSKF PSRSPSKKVK SKHSKDAAWT KFLDNGGSKI TAVETAEEWN IDMSQLFFGL
KFAHGAHSRL YHGVYKDESV AVKLIMEPED DESGDLASRL EKQFVREVTL LSRLHHQNVI KFSAACRKPP VYCIITEYLS
EGSLRAYLHK LEHQTISLQK LLTFALDIAR GMEYIHSQGV IHRDLKPENI LIGEGCRLKI ADFGIACEEA SCDILADDPG
TYRWMAPEMI KRKSYGRKVD VYSFGLILSE MLTGNIPYED MNPIQAAFAV VNKNSRPVIP SDCPAAMRAL VEQCWSLQPD
KRPEFWQIVK ILEQFQSSLA RDGTLTLLPN PCWDNKKGLL HWIQKLGPVH QNSGPVPKPK FT*