GBrowse Details

Vigan.05G040500.01

Basic Information:
Name: Vigan.05G040500.01
Multiple alignment
Variant Information
Position: Chr05:2704717..2707120 (+ strand)
Length: 2404
Functional Information:
Description: Similar to Uncharacterized protein. [I1M269, Glycine max]
GO: Biological Process: lipid metabolic process (GO:0006629)
Biological Process: fatty acid biosynthetic process (GO:0006633)
Biological Process: oxidation-reduction process (GO:0055114)
Cellular Component: integral to membrane (GO:0016021)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705)
InterPro: Fatty acid desaturase, type 1 (IPR005804)
Sphingolipid delta4-desaturase (IPR011388)
Sphingolipid delta4-desaturase, N-terminal (IPR013866)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.93,2.45,14.36,3.16,47.67,10.74,5.9 0,6.01
Arabidopsis thaliana homolog: AT4G04930.1
Automatic updates:
Name: NM_001253270 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sphingolipid delta(4)-desaturase DES1-like (LOC100792937), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001253270 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sphingolipid delta(4)-desaturase DES1-like (DES1.2), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001363937 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sphingolipid delta(4)-desaturase DES1-like (DES1.1), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:2704717..2704927 (+ strand)
Length: 211
Type: five_prime_UTR
Position: Chr05:2704928..2705158 (+ strand)
Length: 231
Type: CDS
Position: Chr05:2705856..2706674 (+ strand)
Length: 819
Type: CDS
Position: Chr05:2706675..2707120 (+ strand)
Length: 446
Type: three_prime_UTR

>Vigan.05G040500.01 class=Sequence position=Chr05:2704717..2707120 (+ strand)
GTGATGAAGA ACATTGAGGA ATAATAACCC ACCAGGTTTA GAAAAGGTTA ATTTCAAAAA TAGATTTGTT AATTGGGTTA
CATTACATTA CATCCAATCC AGGGCAGTCC TCTGATTTTC CAGCCTGTAG TGTCGGGCAA ACAAATGGTT ATGTCTGTTC
CCTCTATTCT TAGCCATTTT CCAGTTTCCT TCCCATTCCT CGTATAAATA TATGCGTTGT TCTTCCATCT ACAGTCAGAG
AGAAAAAGAG ATATCAAAGA GAGAGAGAGA GAAAGAGGGT GAAAAAAAAA TGGGTAAAGG AGATGATCAA GAAGGTGTCG
TAGCCGGGGG CTTCTTCTGG TCCTACACCG ACGAACCCCA TGCCTCACGA CGTCGTCAGA TCCTCTCCAA ATACCCTCAA
ATCAAGCAAC TCTTTGGCCC CGACTACTCC GCTTTCTTCA AGGTTTCGCC TTTTCCCGTT TTTCATTCCA ATCTCGCTCT
TTTCTTTTCT GGGTTCCTTT CCATTTCCCC AATGCTGTTG TTGTATCTGT TTTTGGCTTT TGGGTTGTCG TCATCCTTTT
TATTCAATGC TCGCAATATC TGTTGTTTGC TTTCTTATCT ATTTTCTTTC ATTTTTCCCA ATCTAATGTT TCTCCTGTCT
TTTTCTCTCT TGGCATTGCC TATGTGGCTG GCGGATTCCT AACTTATTTC GATTGGTTTC ACAATGTTTG TATCTGAGAT
TGAGCCTCTG CTGAACATAA TCCTACATTG ATGTGGTTGT TATATCTATA TGAGACTTAG ATCTCTTGAG AAAACCCGAG
TTCCCCAATT CATTCCTGTT CAAAATAAAT AAATAAAAAA GGTGAATTTG ATACTGTGAA AACTTACATT GTCAACTAAT
CTGAAATATT GGTAGGTATG ACTTTGAAGG CAATCAATGT AAAATTCTAC AAACTTATCA CGTACACTTT TGATTCGATT
GCAATGTAAA CTCGTTAACC GTTAGTGAAT TGACAATTTA TTATAAGAAG TGGCTGTGTA CTATTGTTAA ATGGTATCTC
TTCGATATGT GTGCAGTGCA TGCTATTAGA TTGGGATATG GATTTGAAAT GTGTTTAGGT GGATGGTATT AATAATGTTT
CTAACTTGTG GTGTTGCAGA TTAGTGGAGT TGTTTTGCTT CAGCTTGCTA CCGGTGTTTT GCTTAAAGAT GCTGGGTGGG
TGAAGATATG TTTAGTAGCA TACTTTTTTG GGTCATTTCT GAACCACAAT CTGTTTTTGG CTATCCATGA GCTGAGTCAC
AACCTGGCCT TCTCATCTCC ATCCTTGAAC CGTTGGTTAG GGATATTTGC GAACCTCCCT ATAGGTGTTC CCATGTCTGT
TACTTTCCAG AAGTATCACT TGGAGCACCA CCGGTTCCAA GGTGTAGATG GTGTTGACAT GGATATCCCT AGTCTTACCG
AAGTTCATCT TGTGAAAAAC GTTGTTGCAA AAACCATTTG GGTGTTTTTA CAGCTATTCT TTTATGCACT TAGACCTCTC
TTTCTTAAGC CAAAGCCTCC TGGCTGTTGG GAGTTCGTGA ACTTCTCTGT TCAGATTGGA CTTGATGTCT CAATGGTTTA
CTTTTTTGGC TGGAAATCGC TTGCTTATTT GATTCTTTCT ACATTTCTTG GTGGTGGGAT GCATCCAATG GCTGGCCACT
TCATTTCAGA GCATTATGTG TTCAATCCTG ATCAGGAAAC ATATTCTTAC TATGGACCTC TGAATTACCT CACTTGGCAT
GTGGGCTACC ACAATGAACA CCATGATTTC CCAAGAATTC CTGGAAACAA GCTTCATCTG GTGAAGGAGA TTGCTCCAGA
GTTTTATGAT AGCTTATCAT GCTACAGATC TTGGAGCCAG GTCATTTACA TGTACATCAT GGATCGAACA ATTGGACCTT
TTAGCAGAAT GAAGAGAAAG TCCAGTAAAG CTCAATAGAT CATCCACTCC TCCCTCTTTT GTGATGTCTC AACTTTTCAC
AATTTTCTGT GCAACACAAC AATCTAATAT AGTTTTTGAC CCAAATAGCA AGTTCTTTGT TCATTAGCCC ACAATTGTGC
AAAACATTGT TTTGGGATTT CCTCCTTCAA TTCTTATGCA CACATCTCTC CTCCCTCTCT CTCTCACACT CACACACACA
CACACATGCT GTGCCTTTGA ACTAGTCACG TTATGACAAC CTTGTAGCAA TTGACCTGAG GTTTTTTTGG GTAGTAGAGC
TCAGTAATAA ACCATTTGGA GAACACAAAT CCAAATATTG AAATCTATTT TATAATTATA CTAATCCAAG TTACTCTCAT
TCTGTTTCAA CATATCTATA TTGTTAGGAA TCCAATCCTG TTAATTGGAT GGTATTTTTA AGTAAATTTC AATGTTAATG
TGCA

>Vigan.05G040500.01
GTGATGAAGA ACATTGAGGA ATAATAACCC ACCAGGTTTA GAAAAGGTTA ATTTCAAAAA TAGATTTGTT AATTGGGTTA
CATTACATTA CATCCAATCC AGGGCAGTCC TCTGATTTTC CAGCCTGTAG TGTCGGGCAA ACAAATGGTT ATGTCTGTTC
CCTCTATTCT TAGCCATTTT CCAGTTTCCT TCCCATTCCT CGTATAAATA TATGCGTTGT TCTTCCATCT ACAGTCAGAG
AGAAAAAGAG ATATCAAAGA GAGAGAGAGA GAAAGAGGGT GAAAAAAAAA TGGGTAAAGG AGATGATCAA GAAGGTGTCG
TAGCCGGGGG CTTCTTCTGG TCCTACACCG ACGAACCCCA TGCCTCACGA CGTCGTCAGA TCCTCTCCAA ATACCCTCAA
ATCAAGCAAC TCTTTGGCCC CGACTACTCC GCTTTCTTCA AGATTAGTGG AGTTGTTTTG CTTCAGCTTG CTACCGGTGT
TTTGCTTAAA GATGCTGGGT GGGTGAAGAT ATGTTTAGTA GCATACTTTT TTGGGTCATT TCTGAACCAC AATCTGTTTT
TGGCTATCCA TGAGCTGAGT CACAACCTGG CCTTCTCATC TCCATCCTTG AACCGTTGGT TAGGGATATT TGCGAACCTC
CCTATAGGTG TTCCCATGTC TGTTACTTTC CAGAAGTATC ACTTGGAGCA CCACCGGTTC CAAGGTGTAG ATGGTGTTGA
CATGGATATC CCTAGTCTTA CCGAAGTTCA TCTTGTGAAA AACGTTGTTG CAAAAACCAT TTGGGTGTTT TTACAGCTAT
TCTTTTATGC ACTTAGACCT CTCTTTCTTA AGCCAAAGCC TCCTGGCTGT TGGGAGTTCG TGAACTTCTC TGTTCAGATT
GGACTTGATG TCTCAATGGT TTACTTTTTT GGCTGGAAAT CGCTTGCTTA TTTGATTCTT TCTACATTTC TTGGTGGTGG
GATGCATCCA ATGGCTGGCC ACTTCATTTC AGAGCATTAT GTGTTCAATC CTGATCAGGA AACATATTCT TACTATGGAC
CTCTGAATTA CCTCACTTGG CATGTGGGCT ACCACAATGA ACACCATGAT TTCCCAAGAA TTCCTGGAAA CAAGCTTCAT
CTGGTGAAGG AGATTGCTCC AGAGTTTTAT GATAGCTTAT CATGCTACAG ATCTTGGAGC CAGGTCATTT ACATGTACAT
CATGGATCGA ACAATTGGAC CTTTTAGCAG AATGAAGAGA AAGTCCAGTA AAGCTCAATA GATCATCCAC TCCTCCCTCT
TTTGTGATGT CTCAACTTTT CACAATTTTC TGTGCAACAC AACAATCTAA TATAGTTTTT GACCCAAATA GCAAGTTCTT
TGTTCATTAG CCCACAATTG TGCAAAACAT TGTTTTGGGA TTTCCTCCTT CAATTCTTAT GCACACATCT CTCCTCCCTC
TCTCTCTCAC ACTCACACAC ACACACACAT GCTGTGCCTT TGAACTAGTC ACGTTATGAC AACCTTGTAG CAATTGACCT
GAGGTTTTTT TGGGTAGTAG AGCTCAGTAA TAAACCATTT GGAGAACACA AATCCAAATA TTGAAATCTA TTTTATAATT
ATACTAATCC AAGTTACTCT CATTCTGTTT CAACATATCT ATATTGTTAG GAATCCAATC CTGTTAATTG GATGGTATTT
TTAAGTAAAT TTCAATGTTA ATGTGCA

>Vigan.05G040500.01
ATGCGTTGTT CTTCCATCTA CAGTCAGAGA GAAAAAGAGA TATCAAAGAG AGAGAGAGAG AAAGAGGGTG AAAAAAAAAT
GGGTAAAGGA GATGATCAAG AAGGTGTCGT AGCCGGGGGC TTCTTCTGGT CCTACACCGA CGAACCCCAT GCCTCACGAC
GTCGTCAGAT CCTCTCCAAA TACCCTCAAA TCAAGCAACT CTTTGGCCCC GACTACTCCG CTTTCTTCAA GATTAGTGGA
GTTGTTTTGC TTCAGCTTGC TACCGGTGTT TTGCTTAAAG ATGCTGGGTG GGTGAAGATA TGTTTAGTAG CATACTTTTT
TGGGTCATTT CTGAACCACA ATCTGTTTTT GGCTATCCAT GAGCTGAGTC ACAACCTGGC CTTCTCATCT CCATCCTTGA
ACCGTTGGTT AGGGATATTT GCGAACCTCC CTATAGGTGT TCCCATGTCT GTTACTTTCC AGAAGTATCA CTTGGAGCAC
CACCGGTTCC AAGGTGTAGA TGGTGTTGAC ATGGATATCC CTAGTCTTAC CGAAGTTCAT CTTGTGAAAA ACGTTGTTGC
AAAAACCATT TGGGTGTTTT TACAGCTATT CTTTTATGCA CTTAGACCTC TCTTTCTTAA GCCAAAGCCT CCTGGCTGTT
GGGAGTTCGT GAACTTCTCT GTTCAGATTG GACTTGATGT CTCAATGGTT TACTTTTTTG GCTGGAAATC GCTTGCTTAT
TTGATTCTTT CTACATTTCT TGGTGGTGGG ATGCATCCAA TGGCTGGCCA CTTCATTTCA GAGCATTATG TGTTCAATCC
TGATCAGGAA ACATATTCTT ACTATGGACC TCTGAATTAC CTCACTTGGC ATGTGGGCTA CCACAATGAA CACCATGATT
TCCCAAGAAT TCCTGGAAAC AAGCTTCATC TGGTGAAGGA GATTGCTCCA GAGTTTTATG ATAGCTTATC ATGCTACAGA
TCTTGGAGCC AGGTCATTTA CATGTACATC ATGGATCGAA CAATTGGACC TTTTAGCAGA ATGAAGAGAA AGTCCAGTAA
AGCTCAATAG 

>Vigan.05G040500.01
MRCSSIYSQR EKEISKRERE KEGEKKMGKG DDQEGVVAGG FFWSYTDEPH ASRRRQILSK YPQIKQLFGP DYSAFFKISG
VVLLQLATGV LLKDAGWVKI CLVAYFFGSF LNHNLFLAIH ELSHNLAFSS PSLNRWLGIF ANLPIGVPMS VTFQKYHLEH
HRFQGVDGVD MDIPSLTEVH LVKNVVAKTI WVFLQLFFYA LRPLFLKPKP PGCWEFVNFS VQIGLDVSMV YFFGWKSLAY
LILSTFLGGG MHPMAGHFIS EHYVFNPDQE TYSYYGPLNY LTWHVGYHNE HHDFPRIPGN KLHLVKEIAP EFYDSLSCYR
SWSQVIYMYI MDRTIGPFSR MKRKSSKAQ*