GBrowse Details

Vigan.05G040400.01

Basic Information:
Name: Vigan.05G040400.01
Multiple alignment
Variant Information
Position: Chr05:2697080..2703252 (+ strand)
Length: 6173
Functional Information:
Description: Similar to RING finger protein 141. [W9RNK9, Morus notabilis.]
GO: Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, RING-type (IPR001841)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Zinc finger, RING-type, conserved site (IPR017907)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.00,4.50,6.35,7.40,2.29,13.27,6.75, 4.73
Automatic updates:
Name: NM_001254989 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100789769 (LOC100789769), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254989 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RING Zn-finger domain-containing protein (LOC100789769), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:2697080..2697275 (+ strand)
Length: 196
Type: five_prime_UTR
Position: Chr05:2697276..2697355 (+ strand)
Length: 80
Type: CDS
Position: Chr05:2698389..2698539 (+ strand)
Length: 151
Type: CDS
Position: Chr05:2698632..2698698 (+ strand)
Length: 67
Type: CDS
Position: Chr05:2698791..2699025 (+ strand)
Length: 235
Type: CDS
Position: Chr05:2702677..2702887 (+ strand)
Length: 211
Type: CDS
Position: Chr05:2702888..2703252 (+ strand)
Length: 365
Type: three_prime_UTR

>Vigan.05G040400.01 class=Sequence position=Chr05:2697080..2703252 (+ strand)
CACAACTAAG AATAATATTT GAGGTAGTTG TGCCACGTGT CCTACCGAAA GGTTTTGGTG ATGGCTTTGA AGAAGAGTGT
GTGTGACACT GTGAACGTGG CTATAGTGGA GTTGAGAGAG AGAACGCATG AAAATTTGTA GTGGGTTTTG GTTTAGGAGT
TGGGTTTAGA ATCTTGTTCG GAATTGTGAG AGAGTTATGT ACATAGCTTC CATGGGAAGG TCTTTCAAGG ACTCTCTGAA
ACTGCTTGAA GCTGATATTC ACCATGCCAA TACCCTGTCA GTTTTTCTTT TTTCTTTTTT CCTTTCATTC ATCCTTTCAT
TTCAATTTTT CGCACCCCTT TAAGAAAAAC ACGTTGTTGT GATCAAGTTT GCATTTTTTT AATATGGTAG ACTCAGACAC
CCTTCATTTA TCTTTTCTGA AAAATAGTGT TTTTTTATAT TTTTTTTCAT AATTGGATCA TGATCACGAG TGAAGTTTAT
TTTGGTATAG GGAATGATTC TCTGGGGTTT ATCCTCTGAT TTTTGCTTTC CTTCTCAGTC AACCGTCAAT TTTCGTAAAT
AAAAATATTG AGCATTTAAT TTTGCTGCAA ATACATCGTT CATGTAATTT ACAATTTCCG TTATCTGCAC TTGTGGAAAT
TTTAGTACTT CAGGAACCCG GACCTAACAA ACAGGGAAAC CTTTGGTGGA GTTCTTCATC TGGCTTGTTT GCTTGTTAGT
GACATTATAT TTACGAGTAA CTTCTGGTTT TTAATTTTCT AAATGACTGT ATTTTACTGT TTCGTCCTGT ATATTGTGCC
CAAAACTTTG ACAATCTGGG CTTTCGTTAT GCTGGATTTG TGTGGTTACG AGAAGAGAAT TTGTTATTGC TTTCACTGTT
TCGTTTATTT GTCTTGTTTG TGTCTATAGT GACAATATTT TTCTCCAGTC ATATGTGTGG CATTTTGTCC CTTTGGCAGG
GGTTGGATGG TCTCTTGAGT GATTTGGTTG ACAATCAAAC AATGCACGAT TATTTTTTAT CACGATTTAT TTCTTCCTGA
CATCTGATAT GCAGTGCATT ATCTTTTTCT GCGACAGCGC CATGCTGCCT AGTTGCTTGT GTGTGTGTGT GTTTGTGTTT
TCTTTTTTGA TTCAGTATTT TGAAGTTTGT TGTGTTTATG ATGAGCCTTT AGAGAAACTT GTCTAGACAG GCTACAGATA
ACATACTTGA GTTCTGAATG GTGTCCAATG GAACGTTGCA TTTTTTTTCC ATGTCGCCAG CCATTCTTCT TGCTTATATT
TATCACTTTA CACGCAATTG GGTGTGCAGG GCATCAGATT TTCCAAGGGA ATATGACGGT GCATGCCTTC AAATGAGAAT
GTCATACAGT ATGGCAGCAC ACCTATTTCT CTTTTTGGTA CAATGGACAG ATTGCAATCT TGCCGGGGCC CTAGGATTGT
TAAGAATCCT AATATACAAG GTATGGTCCA AGGCGTTTTG GGTTTTGGAT GTTCGTATTA AACTCAGAAA TTTGGTCAAG
GTGACAACTG ACAAATTTTC CTCTCGCTTC AGGTTTATGT AGATGGGACA ACTACCATGT CTACCCATGA AAGGAAAGCA
AGTATTAGAG AATTCTATGG TATATTTATA CCTTTTTATG TAATAACTAG CAAGTTTATT TGCATTTATT CTATTTGAAT
CGCTGATGTA CTGAATTTCT GCATTGATCA GCGGTCATAT ATCCCTCATT GTTGCAACTG CAAAAAGGTG TAACTGATAC
AGAGGACAAA AAACAGAAGG CTGTATGCTT GGAGAGGTAT CGGAAAAGAG ATGAAGATGA GCACAGGCAG CCTTCGGATA
TAGACATTGA AAGGGAAGAG GAATGTGGAA TATGCATGGA GATGAACAGT AAGATTGTGT TACCCGACTG CAACCATGTC
ATGTGCCTGA AATGTTACCA CGAATGGTAC TTTCTCTTGC TGATGCTCAC ATTTCGTCGT TTATGGTCAT GAATTGTTCA
TGTTAAGAAG TATGAAATTG TGAGGCTGTT TCTTCTACTT CTAGGTTCTC TCTACTTCTC TTGGAAAATG TTTTATGGTA
GCTTTTTGTT TGGTTCTTTT AGTTTCATGC CTACTAATTA GAGCTGTGTT GCATAAAGTG TCACTTCTAT AAACTGTAAT
TTGTCGAATC TGCTTGGTTT TTTTGTAGAT TTTGGATTTG CTCAGTTTGC TTCGACCATA ATTGTTTGAC GATGTTAAGT
AATGGTTTCT TCCATAGCAG CCTTTGCAAG TAGTGTAATA GAATAGCAGA GCTTCCACAT AATTTCCTTC ATATTGAGCT
GACCTCTGTT ATGGTTGTCA TTTGGTTCAA AGAACCTCTG CCCGAACCTT ACTTGAGATT TTCATCTCAT TTGACTCCCC
CGTTTTGGTG TAATGATAAA AATACACAAC CTAAAAAAAG ATTGCAGTAT TCCATTATCT GCTGAGCAAA GCTACTGTTT
TTACGATAAA TTTTTAGCCA ACCTTCTTTG AAAAATTATT TCTTTTATTA TCCCTATTTC TGGATACACA ATAAATATCT
AGAATCAATC TGACCACCAG TGACCTGGTT TTAGAATTCT GTGTCTGCGG ATGTGATGCC ATAACAGGCA CTATATGCAT
TTGTATGTGT CTGTATATAG GTAGGGATTT TCAATTCTCA TTATTCTGTT ATTGCTCTTA ATATAAGTAT TCAATTAAAA
AGTAGCAGAT ATGGGAATGA ATTAAAGAGA AGTTGGTTGC AGCTGTTATG TCTATAATAG GTAGCTGTGA AAGCTGGTTA
TATTCTATAT TCATAGTTTC TTAGTTTATG ATGTATTGAT ATATCAGAAG TGATGTATTT GTATCGTATT CATAACTGAT
ACTAATACTA ATATAGTAAA CTTGAATTTG CATTGTTAGT ATGCATGTAG CCCTCAGAGT ACTGGTCAAC CTAAAAGTTA
TTACGCAGGA ACTTGGAAGA GGGAAAGTGC ACTAGTATAA GTTGGGACCG GATGATCATG TTGAATTTAG GAGGAGATAT
ACAATGAAGT TGCTAAATGT AGAAGAAAAA TTTTCAGTGA GGTTTTAGAG AACGGAAATG GTTCTTTGAG TATGCTAAGA
GTAAATGAAT GGACTTCCTA TGAATATTAA ATTCATTTTA ATATGTGATA CATGTACTGT GCGTTCAAAC AGATTAGGTG
TGAATAAATT TTATTTTAGT TATGAATGTA CACATTTTAA TTATTTATAC TGTCATACTG GTATCTTTTT TTAAAGAAAG
GCTACCTCTG TCTTTGTACT GCATCAGATA CTCATATTTG GTTCTATACA AGCTAAGACC CCAACCAATT AGTTCTACAG
TCCACTAGAC TATTGTGATA GGTAGAATTA AAGAGCGAAA ATGTTGAAGA CACCAAAAGG TGCAAAGGCA TTGTATGGAA
AGGGTCCAAT ACCTTCTTCT ATGAGGTTCA GCTACTTGAA TTTAAGGGTG ATTATGCCTC ATAGCAAAGG TGCTCTTAGC
AATTACTTGA TTTAAGACAT TGTATTTGGC AAAACTCAGC CGTTAAAAAC TTTCAGGTTT TAATTTCAAA ATGTTGGCCA
CCACTTGAAC TAACAGGCAC ATTCACTCAT TTTTTTTTTT ATGTTTTTCT ATTCTTCTGT ATGCATGCTT ATATTTTATG
TGATAGTTTA ACACTTATTT ATCTTTTTGA TTTAAAATGT TTTTTTACAC GTGGCAGATT AATGTTATTA TTATTTATTT
TGTATCTCAC TGTCCCATAG ATGTGCATTT TTTGGTGTCT GCAAGTTTTT ACTGTTACCT TTTGATTAGT TTTTTAAAGA
ACTTTATGAT TTCAATATTG CATTAGCTAT GGTAAACATC AATAGTTGTA AAAATAGTGC TAGGTTACGT GTTTATGGAC
TACTGCCTTT TTACCAAATA TTACATGGTC CTGTATTCTC TGCATTTCTT CAGGTGAAGA AGTTAATTTT GTATGCTATG
GTTTTTCGAC AGTTTTTTCC TATTTGGATG TTTCATGGGA TAGGAGGGTG GACCCTGATT TCTAATTCCA GTTATCCACA
AGTATTATAT TTTTTCTTCT GATATGTTGC TGGTGCTGAA ATTGGTGGGA AAATGTAATG TATTATGTTT TGAATAAAAA
TGAAATGGGT CTCTGTATTG TGCCTAACTG GGAAGCCATC CAAGTAATAT ACATGTATCT TGCACCTTGC GCTTTAGGGA
TAATTTGTTT TTTTTTTTAA TTGCTTTAGG GAAACATTTT TGTGAAACCT TCAATGTTGT ATTTTAGTAT CAAGTCAGAG
CAACAAACTT CAAGGGAAAA GGGACTAAAG TTGTATTATA GAAGGAAAAG AAAGGGGTAA AAGGGTAGCA ACAGGAGGTT
TGGAGAGTTA GTTAGTTCAG TTTTCTCTAT AAGTAAAACT CCTTTAGGTA GAGAGGGGAC TATTGTTGTA AAACTGGACT
GATTCCAGTG GAAAGGAGTA GTCTCCTTTG GAAGAGTAGT TGTATACCTT GGTTCTTGGC TTGTAACGAG TTTTCAGTAA
TAAAGAGAGG AGGTTAAGAA TCTTTTTGTG TACTGTTGTT TTTTTGTTAG GCTTTAACCT TTTCAATTCT GAAAAGAGGA
TTCAAAGATT GTGGTAACTT GATTGTTCAA CGAGTGCCTT TCATGTGCTG AAGTAAATTC ATTAAACTCT TCATATGGAT
TGAAAGTGAA TTCGTACCAG GCACATCTAG GAATCTGGTT TAGTGTTTGG GAGATCTTCT AAGAGTGTTC AGTCACGAGG
TGTTTTATTT GCAACTGAAA AAAGTGCATA GGGAAGTGTT ATGTCCCCCA TTTACAGCCA ATCATATATA CAACAAACAA
GCTTTACACT GGTCAGTGAC AATCATTGCT ATCTCATACC TTAGTCAAAA CTTTTGATGC AAGAAAGAAG CAAGCATCAA
GTTTTACAAA CCCGAAGACT GATTTGATTG ATTTAGTGAA ATTGAGCTGA AATTCGGAGA AAGAGTTCTC CTTCTCATCC
AAAGATTTCT CCTTTCACCA CACCTTAGAT TATGTATGGT TCTTCCAATC CTCTTTTAAT TTTTATGGTG TGACATGACT
TTCTCTCGTT AATTCTTTAA CCAAATCTCC ATACTTGTGG TCAGATTCTC ATTTAGGCCT TGTTGACTTG AAGAGATTTG
GGAGAGAGTA ATTGAGGGGA TTTGAAGATA AATTTTTTTG TTGTTTATTT GAGTGAATTT GGAGGTAAGT GAGAATGAAT
TTGGAAGTGA AATTTGTGAG AATTAGTGCA GGATTTGATT GACGTGACAA ATTAAAAAAA TTTACTTTCA AATTCATCCT
CATTTACCTC CAAATTCACT CAAATAAACA ACAAAAAAAT TTCTCTTCAA ATTCTCTCAA ATCCCCTCAA TTACTCTCCT
TCAAATTCAT TCAAGTAAAT AAGGTCTTAA TGTTTGTACA TCGTGTCTAA CTACACGAAA TTTTATTTTA CATCATTTTA
CCTGCCAGTA CGTGCTTTGG TTGAGTGTTC TGTTGTTCAG TTCAAAATTA CATCATTGTA TTTGCGATGT TTTGCAGGAG
AACAAGATCA CAGTCATGCC CCTTTTGCCG TGACAGTCTC AAGAGAGTAA ACTCAGGCGA TCTCTGGGTG TTCACTGATG
GTAGGGATGT TGTAGACATG GCAACAGTGA CAAGAGAGAA TCTTAAAAGG CTTTTCATGT ACATAGATAA GTTGCCTTTG
ATCATTCCAG ACTCTCTTTT TGACACTTAT GACTCTCATC TAAGATGAGT GGTTTTAATC AGTGTCTCTG GTGTTGGAGG
GGCAGTTCCT TTCAATTTAG TAACATAAAC TCGGAATGTC ATTTGGTAAA TTTAGTCTAT AGAGTCGCAG TGTTGCTTCC
CACGTCTTGC AAAAAAGTTT CCAACCCTGA GTTTACTGCG GGTTGGTGGT GAAGATGAGT ATGTGCTCAT TTGTCTTTGT
ATATCCTGTA CAGATTCAAT TGCTTGTTCA GAAGAGATCT GTTTCCATAT TCCGTGTCTC AAAACAGTAT ATTTTCCATG
GATCCCACCT ATTTAGTTTT GAATGGAGCA AAATCAGTAT CTATAATGTG ATTCAATTCT CTTCACTAGT ATTGTACCAA
CACATCCTTT AAT

>Vigan.05G040400.01
CACAACTAAG AATAATATTT GAGGTAGTTG TGCCACGTGT CCTACCGAAA GGTTTTGGTG ATGGCTTTGA AGAAGAGTGT
GTGTGACACT GTGAACGTGG CTATAGTGGA GTTGAGAGAG AGAACGCATG AAAATTTGTA GTGGGTTTTG GTTTAGGAGT
TGGGTTTAGA ATCTTGTTCG GAATTGTGAG AGAGTTATGT ACATAGCTTC CATGGGAAGG TCTTTCAAGG ACTCTCTGAA
ACTGCTTGAA GCTGATATTC ACCATGCCAA TACCCTGGCA TCAGATTTTC CAAGGGAATA TGACGGTGCA TGCCTTCAAA
TGAGAATGTC ATACAGTATG GCAGCACACC TATTTCTCTT TTTGGTACAA TGGACAGATT GCAATCTTGC CGGGGCCCTA
GGATTGTTAA GAATCCTAAT ATACAAGGTT TATGTAGATG GGACAACTAC CATGTCTACC CATGAAAGGA AAGCAAGTAT
TAGAGAATTC TATGCGGTCA TATATCCCTC ATTGTTGCAA CTGCAAAAAG GTGTAACTGA TACAGAGGAC AAAAAACAGA
AGGCTGTATG CTTGGAGAGG TATCGGAAAA GAGATGAAGA TGAGCACAGG CAGCCTTCGG ATATAGACAT TGAAAGGGAA
GAGGAATGTG GAATATGCAT GGAGATGAAC AGTAAGATTG TGTTACCCGA CTGCAACCAT GTCATGTGCC TGAAATGTTA
CCACGAATGG AGAACAAGAT CACAGTCATG CCCCTTTTGC CGTGACAGTC TCAAGAGAGT AAACTCAGGC GATCTCTGGG
TGTTCACTGA TGGTAGGGAT GTTGTAGACA TGGCAACAGT GACAAGAGAG AATCTTAAAA GGCTTTTCAT GTACATAGAT
AAGTTGCCTT TGATCATTCC AGACTCTCTT TTTGACACTT ATGACTCTCA TCTAAGATGA GTGGTTTTAA TCAGTGTCTC
TGGTGTTGGA GGGGCAGTTC CTTTCAATTT AGTAACATAA ACTCGGAATG TCATTTGGTA AATTTAGTCT ATAGAGTCGC
AGTGTTGCTT CCCACGTCTT GCAAAAAAGT TTCCAACCCT GAGTTTACTG CGGGTTGGTG GTGAAGATGA GTATGTGCTC
ATTTGTCTTT GTATATCCTG TACAGATTCA ATTGCTTGTT CAGAAGAGAT CTGTTTCCAT ATTCCGTGTC TCAAAACAGT
ATATTTTCCA TGGATCCCAC CTATTTAGTT TTGAATGGAG CAAAATCAGT ATCTATAATG TGATTCAATT CTCTTCACTA
GTATTGTACC AACACATCCT TTAAT

>Vigan.05G040400.01
ATGTACATAG CTTCCATGGG AAGGTCTTTC AAGGACTCTC TGAAACTGCT TGAAGCTGAT ATTCACCATG CCAATACCCT
GGCATCAGAT TTTCCAAGGG AATATGACGG TGCATGCCTT CAAATGAGAA TGTCATACAG TATGGCAGCA CACCTATTTC
TCTTTTTGGT ACAATGGACA GATTGCAATC TTGCCGGGGC CCTAGGATTG TTAAGAATCC TAATATACAA GGTTTATGTA
GATGGGACAA CTACCATGTC TACCCATGAA AGGAAAGCAA GTATTAGAGA ATTCTATGCG GTCATATATC CCTCATTGTT
GCAACTGCAA AAAGGTGTAA CTGATACAGA GGACAAAAAA CAGAAGGCTG TATGCTTGGA GAGGTATCGG AAAAGAGATG
AAGATGAGCA CAGGCAGCCT TCGGATATAG ACATTGAAAG GGAAGAGGAA TGTGGAATAT GCATGGAGAT GAACAGTAAG
ATTGTGTTAC CCGACTGCAA CCATGTCATG TGCCTGAAAT GTTACCACGA ATGGAGAACA AGATCACAGT CATGCCCCTT
TTGCCGTGAC AGTCTCAAGA GAGTAAACTC AGGCGATCTC TGGGTGTTCA CTGATGGTAG GGATGTTGTA GACATGGCAA
CAGTGACAAG AGAGAATCTT AAAAGGCTTT TCATGTACAT AGATAAGTTG CCTTTGATCA TTCCAGACTC TCTTTTTGAC
ACTTATGACT CTCATCTAAG ATGA

>Vigan.05G040400.01
MYIASMGRSF KDSLKLLEAD IHHANTLASD FPREYDGACL QMRMSYSMAA HLFLFLVQWT DCNLAGALGL LRILIYKVYV
DGTTTMSTHE RKASIREFYA VIYPSLLQLQ KGVTDTEDKK QKAVCLERYR KRDEDEHRQP SDIDIEREEE CGICMEMNSK
IVLPDCNHVM CLKCYHEWRT RSQSCPFCRD SLKRVNSGDL WVFTDGRDVV DMATVTRENL KRLFMYIDKL PLIIPDSLFD
TYDSHLR*