GBrowse Details

Vigan.05G021600.01

Basic Information:
Name: Vigan.05G021600.01
Multiple alignment
Variant Information
Position: Chr05:1377924..1382217 (+ strand)
Length: 4294
Functional Information:
Description: Similar to tRNA (Cytosine-5-)-methyltransferase. [G7IPK4, Medicago truncatula]
GO: Biological Process: DNA methylation (GO:0006306)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: methyltransferase activity (GO:0008168)
InterPro: C-5 cytosine methyltransferase (IPR001525)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.92,7.89,4.43,5.12,10.56,2.66,6.23,3.51
Arabidopsis thaliana homolog: AT5G25480.1
Automatic updates:
Name: NM_001255937 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max tRNA (cytosine-5-)-methyltransferase-like (LOC100792567), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:1377924..1378030 (+ strand)
Length: 107
Type: five_prime_UTR
Position: Chr05:1378031..1378102 (+ strand)
Length: 72
Type: CDS
Position: Chr05:1378176..1378286 (+ strand)
Length: 111
Type: CDS
Position: Chr05:1378745..1378838 (+ strand)
Length: 94
Type: CDS
Position: Chr05:1378921..1379039 (+ strand)
Length: 119
Type: CDS
Position: Chr05:1379143..1379265 (+ strand)
Length: 123
Type: CDS
Position: Chr05:1380249..1380588 (+ strand)
Length: 340
Type: CDS
Position: Chr05:1380685..1380779 (+ strand)
Length: 95
Type: CDS
Position: Chr05:1381334..1381396 (+ strand)
Length: 63
Type: CDS
Position: Chr05:1381560..1381624 (+ strand)
Length: 65
Type: CDS
Position: Chr05:1381815..1381890 (+ strand)
Length: 76
Type: CDS
Position: Chr05:1381891..1382217 (+ strand)
Length: 327
Type: three_prime_UTR

>Vigan.05G021600.01 class=Sequence position=Chr05:1377924..1382217 (+ strand)
CTAGGGTATT GGTCATTGAT TGGCAGGAGG CAACTAGGGA TTTTTGTTAT ATCATACGAA TTTTTGTTTG GTAAAAAGCG
ATTGGTAGAT TAGAGGCAGT AATCGGAATG GCGAAGGGGT CGTCCGAGGC ACATGGTTGC CGGAGAGTGT TGGAGTTTTA
CAGTGGAATC GGTGGCATGG TATTCACTTC ATCTACGGAA GCAAGTCTTT TTGCTTCAAT TTCATATGTT AATGCTCTTA
GTGTTTGTTT AGAGGTACTC TCTGATGAAG GCCCAGGTGA ATGCCGAAGT GGTGGAAGCA TTTGAAATTA ACGACACAGC
AAACGACGTT TACCAACATA ATTTTGCTCA TCGTCCTTTT CAGGTTTCCT TTGTTGTTTT TTGAATTTAA ATTGTTGATT
TGAAGTTCTG TTCACCTATT AGTTTCTTGC TTATTCCATT AGCTGAATGC TAATAGTCTT GTGCTTATTT AGTTATACTA
GTTGTAGTTC TCAATTTTTA TGCATTCTGT GAAAGTTTAA ATTCGTTCAG AATAAATTGG CTTTACTCCA ACTTCTTTTT
CATTTCATCT TGTCAGTCAG TGGTCCTTTT TAACCCTCTA GGGTCTGTAT ACTGGTGAAA ACTTTGAACA GTTTGTACAA
GATCCTAGGT TGAAACCTTG TTGCCGCCAT TGTACGCCAA AAAAAATCTA GGTTCTTTTT GGAGTTTGGC TTTGTCATAA
TTGTCAAACT ATATGAATGT GCACTTTACA TGATGTCCCA GACAAAGATA AAACATGAAA TGATTAGGCT CATCTTTATT
AACTTTTTCT TGTTGATTTA GGGAAATATT CAATGCCTGA CTTCTGCTGA TCTGGACAAG TATGGTGCCG ATGCATGGCT
TCTTTCTCCT CCTTGCCAAC CTTATACACG ACAAGGTGAG TTTTTCATCT TCAAATATTA TGGGTTACCT TTTTCTTTCT
TTGTTTGGCA AAAACTTACT CAATAATCCT GTGCCAGGCC TTCAGAAGGA CACTGGAGAT GCCCGATCAT TTTCTTTTCT
TCAGATTCTT GAGCTCTTGC CATTTCTATT GAAGCCTCCA AGTATGTTAT TTGTAGAAAA TGTTGTTGGA TTTGAGGTTT
GTCTTGTTTG ATTGAACTCA TAGTTATTAG CCAAGACTCC AAATTATTTT TAATTATTTC TTCTATTAAT TGTTTTCCTG
TTTTATTCCT TGGTTACAGA CTTCTGATAC ACATGCAAAA CTGGTCGACA TATTGGAAAA GACAGATTTT ATCACACAGG
AGTTCATTCT GACCCCTTTA CAGTTTGGAA TCCCATATTC CAGGCCTCGT TATTTTTGTC TGGTAGTGTT CTTGATCCTT
GCATAGTCTT TTCTTTTGGG ATGTATTTTA TATTAACGAG GAATCATCTG GAAATAAGAA ATATGTTTTG GAATATGATC
ATATAACAGT GATTTTTTGC AAACGTGCTT TCTTTTCATA ATTTTTTTAA AATTGATATT CTGGTTTTTA TGTCCTCTGC
TTTATCTGGA ATGAAATGAA ATTTTGTTGG GGCCTATAAC AGAGCATTTC AGAGGGTTTC TTGTGGAAGC CTTCTTCTTG
TTGACTTAAG TTGTGCTCAC CTTTTGTATT TAAGTTTGTC ATCCAAATAT CTTAATACAG TTGTTCGAAT TACTTGGAGT
ATGGACCTCA TGACCTAGTG TTGTATGTGT CATCAACATC AAATTACAGC ATGCTTTTTA GAAATGAAAT AACAAACACT
GGGTCCTCAG CAGGGATGAA TTCATTCTAA TACTGCATCT ACGATTCTGA CATGTTTAAA CAATACTATA CATTGAAATT
ATTCCTTCTT CCTCAGAAAA GATGATTTCT GTTTTGGTAT GTTGATTTAG AGATATAATT TGGAAAACAG AGAAAAAGAA
GATAATTATA AGGTTGTCTG ATGGATTTTC CTGCACAGCT ATATATATAT ATGGGTGTTT ATTCAGATCG TATAATTTAT
AGCTGAGTGC AAATCTAAAA TAAAGATAAA CATTGGTTTA AAGGCTTTTT GCAAAGTCTT TCAATTGGAT TGAATAGCTT
CAAGAGGTGG TTGGAGTAAG ATTTCTTACA TTTAGTTATA ATGTGTATGA TGTTGTTGGT GTTTCCATTG CATTTTAATC
TCTCTAAAAT TCTTGTTAAT CACTCGATTT GCAAATTACT TACGGATAGT GGGACAAAAA CTGAGTCATA CTAATATCAT
CAATTAGGAT TCTTGCCAGG TGATTTGTAA ACCTGTAATT TAAACATGTT TGTTACTGTT GACTTTATGT GTATAATATT
TTCAGGCTAA GAGGAAAACT TCATCTTTTG TAAATGAATG TTTAAACCGC CAGCTGATTC AGTCTCCGGG GCCATTATTT
GAGTACTTTG ATACAGTGAC TGATGATGAA GATGATTTGT CAAAAGAGGA CAGACATAAA TTGTTGCAGT TATGTCAACC
TATTGAGAAA TTTCTTGAAT TGAAGAAAGC TGACAATGAT ATACCTGTTG AAGCAGCTAC TTTAATGTCT GGTTTGTCTA
ATGATGTTCC TGAGACTTCG GGAAAAACTA ATGGTCATGA ATATGAATCT TTGGACCAAT ATTATGTTCA CCCAAGCTTG
ATAGAACGGT GGGGAAGTGC TATGGGTATC CTTGCCTCAG TAATTTGGTT ACATCATATT CAAAACCATG TTATAATATG
AACACTGTGT ATTTCCCATC CCGTTCCTTA AAAGAGCTTA GATGTTGTCT ATCCTGATTC AAAGCGCTGC TGCTGTTTCA
CAAAAAGTTA TTACAGATAC GTGAAGGGAA CTGGATCCCT TTTGGCAACT GTCCAGGTAG GGATTCTATT TTGTGGAAGT
CTTTCTTCGT CATATTTCTT AATATGTCTA CGTAACACTA CAATTTGTTT GTCATTGAGT CACTGAGATG CTTTTCTCTC
TGTGCTCTAT AGTCACCGTT TCATCTTATG TTTGGTATCT GCTCTCTGTT GCTAAATTGA TGACAAAACT TGGAATGACT
ACCTGTGGTT GATGAAAGTT TCTTGCTCAT TAACATAGAA TATCCTGGTA GTTCTTTTTT ATCATAATTT AGATATAATA
TAATATAACA TTTCTATGAT ACTAAAGAAT ATCTTTCTTG ACATTGACTT TTTCAAATCA CCATTTAATT TCCATATTTT
TTCTTTTCAA GAAAACTATC CTGATAAAGA CTATAAAGCT ATCTTCTTAT AATTGATCTT GGAACAAATG AGTAAATAAA
CTTAACAAAC CCAACGTTTT ATTTTTGTTT GGGGATGGAG CGTTGGGTAA CTATTTGATA GCAACTCCCT TGACGTTAAA
ACTGGTTTCA CTCTTTGCTT TCCTCCTCAA ATCAACATTT AAATGTGCAG CCGATGAAGA GGGACAAAAG TTCACTGAAG
GAGCAGTGTC TCAGATATTT TACCCCGAGA GAGGTTGGTG GATTTTCTTT ATTCTCAATT ATTTAAATTA TTGAGTCAAT
GTCATACGTT TTCAATAATG CTTGCATGTG ACTGCATGTG TTCCAGTGTC TGAAGTTTTC GTCTTGACTT CCGTGTATAT
TACTAATCTA TATTGTATTT GTCATCTTAT ACCTAGGTTG CCAACCTACA CTCTTTTCCT GGAGAATTTG AGTTTCCAGA
GCACGTTAGT CTCAAGCAAA GGTATTGAAT GATATTTTTG CATTCCTCCG GAGGAATCCC TTATTTTAAC TTTTTAGTGT
TGTTTAGTTG TTGACTTATT AATTCCGAAT ACTCTGTTTT ACACTGTTAA TTGGTCAGAT TGCTGAGTTA TATGCTTTCG
TGTATTTATT GCTTGCGTTT TATTATACTA CTGATATTTT TTCTTTTATA GGTATGCCTT GTTAGGGAAC AGTTTAAGCA
TAGCAGTTGT TGCTCCCTTA CTTAAGTATC TTTTCACCGA ACCTTAATGA TTTTTGATCG CGACATCCGT TCAACAGAAG
CAGATAGATA TTTCATAGGG CCGTCTCCTA TAATTTTGCT ATGATAATGA GATCATGTAT CATAATGCTG TGAGTTCGTG
TGTCGATCAT AACGATCCAA CACTCACGAG TTTGCCACTT CAGAATTCAA ATTTAGTTTA CTAATGAGGG ACTCTAAAAT
GTAAATGAAA TATGGGAGAG ATTTAAAATG TACTTATCCG GCATCTTGTA GAAGAAATGA TAGCATCTTG TATCAAATTT
GCATTTAAAC AGATTTGAGG AAATATGCAG TTAAATTTAA GTGTTCTCTA AAGC

>Vigan.05G021600.01
CTAGGGTATT GGTCATTGAT TGGCAGGAGG CAACTAGGGA TTTTTGTTAT ATCATACGAA TTTTTGTTTG GTAAAAAGCG
ATTGGTAGAT TAGAGGCAGT AATCGGAATG GCGAAGGGGT CGTCCGAGGC ACATGGTTGC CGGAGAGTGT TGGAGTTTTA
CAGTGGAATC GGTGGCATGA GGTACTCTCT GATGAAGGCC CAGGTGAATG CCGAAGTGGT GGAAGCATTT GAAATTAACG
ACACAGCAAA CGACGTTTAC CAACATAATT TTGCTCATCG TCCTTTTCAG GGAAATATTC AATGCCTGAC TTCTGCTGAT
CTGGACAAGT ATGGTGCCGA TGCATGGCTT CTTTCTCCTC CTTGCCAACC TTATACACGA CAAGGCCTTC AGAAGGACAC
TGGAGATGCC CGATCATTTT CTTTTCTTCA GATTCTTGAG CTCTTGCCAT TTCTATTGAA GCCTCCAAGT ATGTTATTTG
TAGAAAATGT TGTTGGATTT GAGACTTCTG ATACACATGC AAAACTGGTC GACATATTGG AAAAGACAGA TTTTATCACA
CAGGAGTTCA TTCTGACCCC TTTACAGTTT GGAATCCCAT ATTCCAGGCC TCGTTATTTT TGTCTGGCTA AGAGGAAAAC
TTCATCTTTT GTAAATGAAT GTTTAAACCG CCAGCTGATT CAGTCTCCGG GGCCATTATT TGAGTACTTT GATACAGTGA
CTGATGATGA AGATGATTTG TCAAAAGAGG ACAGACATAA ATTGTTGCAG TTATGTCAAC CTATTGAGAA ATTTCTTGAA
TTGAAGAAAG CTGACAATGA TATACCTGTT GAAGCAGCTA CTTTAATGTC TGGTTTGTCT AATGATGTTC CTGAGACTTC
GGGAAAAACT AATGGTCATG AATATGAATC TTTGGACCAA TATTATGTTC ACCCAAGCTT GATAGAACGG TGGGGAAGTG
CTATGGATGT TGTCTATCCT GATTCAAAGC GCTGCTGCTG TTTCACAAAA AGTTATTACA GATACGTGAA GGGAACTGGA
TCCCTTTTGG CAACTGTCCA GCCGATGAAG AGGGACAAAA GTTCACTGAA GGAGCAGTGT CTCAGATATT TTACCCCGAG
AGAGGTTGCC AACCTACACT CTTTTCCTGG AGAATTTGAG TTTCCAGAGC ACGTTAGTCT CAAGCAAAGG TATGCCTTGT
TAGGGAACAG TTTAAGCATA GCAGTTGTTG CTCCCTTACT TAAGTATCTT TTCACCGAAC CTTAATGATT TTTGATCGCG
ACATCCGTTC AACAGAAGCA GATAGATATT TCATAGGGCC GTCTCCTATA ATTTTGCTAT GATAATGAGA TCATGTATCA
TAATGCTGTG AGTTCGTGTG TCGATCATAA CGATCCAACA CTCACGAGTT TGCCACTTCA GAATTCAAAT TTAGTTTACT
AATGAGGGAC TCTAAAATGT AAATGAAATA TGGGAGAGAT TTAAAATGTA CTTATCCGGC ATCTTGTAGA AGAAATGATA
GCATCTTGTA TCAAATTTGC ATTTAAACAG ATTTGAGGAA ATATGCAGTT AAATTTAAGT GTTCTCTAAA GC

>Vigan.05G021600.01
ATGGCGAAGG GGTCGTCCGA GGCACATGGT TGCCGGAGAG TGTTGGAGTT TTACAGTGGA ATCGGTGGCA TGAGGTACTC
TCTGATGAAG GCCCAGGTGA ATGCCGAAGT GGTGGAAGCA TTTGAAATTA ACGACACAGC AAACGACGTT TACCAACATA
ATTTTGCTCA TCGTCCTTTT CAGGGAAATA TTCAATGCCT GACTTCTGCT GATCTGGACA AGTATGGTGC CGATGCATGG
CTTCTTTCTC CTCCTTGCCA ACCTTATACA CGACAAGGCC TTCAGAAGGA CACTGGAGAT GCCCGATCAT TTTCTTTTCT
TCAGATTCTT GAGCTCTTGC CATTTCTATT GAAGCCTCCA AGTATGTTAT TTGTAGAAAA TGTTGTTGGA TTTGAGACTT
CTGATACACA TGCAAAACTG GTCGACATAT TGGAAAAGAC AGATTTTATC ACACAGGAGT TCATTCTGAC CCCTTTACAG
TTTGGAATCC CATATTCCAG GCCTCGTTAT TTTTGTCTGG CTAAGAGGAA AACTTCATCT TTTGTAAATG AATGTTTAAA
CCGCCAGCTG ATTCAGTCTC CGGGGCCATT ATTTGAGTAC TTTGATACAG TGACTGATGA TGAAGATGAT TTGTCAAAAG
AGGACAGACA TAAATTGTTG CAGTTATGTC AACCTATTGA GAAATTTCTT GAATTGAAGA AAGCTGACAA TGATATACCT
GTTGAAGCAG CTACTTTAAT GTCTGGTTTG TCTAATGATG TTCCTGAGAC TTCGGGAAAA ACTAATGGTC ATGAATATGA
ATCTTTGGAC CAATATTATG TTCACCCAAG CTTGATAGAA CGGTGGGGAA GTGCTATGGA TGTTGTCTAT CCTGATTCAA
AGCGCTGCTG CTGTTTCACA AAAAGTTATT ACAGATACGT GAAGGGAACT GGATCCCTTT TGGCAACTGT CCAGCCGATG
AAGAGGGACA AAAGTTCACT GAAGGAGCAG TGTCTCAGAT ATTTTACCCC GAGAGAGGTT GCCAACCTAC ACTCTTTTCC
TGGAGAATTT GAGTTTCCAG AGCACGTTAG TCTCAAGCAA AGGTATGCCT TGTTAGGGAA CAGTTTAAGC ATAGCAGTTG
TTGCTCCCTT ACTTAAGTAT CTTTTCACCG AACCTTAA

>Vigan.05G021600.01
MAKGSSEAHG CRRVLEFYSG IGGMRYSLMK AQVNAEVVEA FEINDTANDV YQHNFAHRPF QGNIQCLTSA DLDKYGADAW
LLSPPCQPYT RQGLQKDTGD ARSFSFLQIL ELLPFLLKPP SMLFVENVVG FETSDTHAKL VDILEKTDFI TQEFILTPLQ
FGIPYSRPRY FCLAKRKTSS FVNECLNRQL IQSPGPLFEY FDTVTDDEDD LSKEDRHKLL QLCQPIEKFL ELKKADNDIP
VEAATLMSGL SNDVPETSGK TNGHEYESLD QYYVHPSLIE RWGSAMDVVY PDSKRCCCFT KSYYRYVKGT GSLLATVQPM
KRDKSSLKEQ CLRYFTPREV ANLHSFPGEF EFPEHVSLKQ RYALLGNSLS IAVVAPLLKY LFTEP*