GBrowse Details

Vigan.05G011700.01

Basic Information:
Name: Vigan.05G011700.01
Multiple alignment
Variant Information
Position: Chr05:720496..722817 (- strand)
Length: 2322
Functional Information:
Description: Similar to mRNA turnover protein 4 homolog. [XP_004485517.1, Cicer arietinum]
GO: Biological Process: ribosome biogenesis (GO:0042254)
Cellular Component: intracellular (GO:0005622)
InterPro: Ribosomal protein L10/acidic P0 (IPR001790)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:10.09,18.15,28.26,19.24,40.41,37.90, 33.48,26.74
Arabidopsis thaliana homolog: AT1G25260.1
Structure :
Position: Chr05:720496..720952 (- strand)
Length: 457
Type: three_prime_UTR
Position: Chr05:720953..721069 (- strand)
Length: 117
Type: CDS
Position: Chr05:721467..721543 (- strand)
Length: 77
Type: CDS
Position: Chr05:721628..721718 (- strand)
Length: 91
Type: CDS
Position: Chr05:721873..721933 (- strand)
Length: 61
Type: CDS
Position: Chr05:722191..722249 (- strand)
Length: 59
Type: CDS
Position: Chr05:722338..722594 (- strand)
Length: 257
Type: CDS
Position: Chr05:722719..722746 (- strand)
Length: 28
Type: CDS
Position: Chr05:722747..722817 (- strand)
Length: 71
Type: five_prime_UTR

>Vigan.05G011700.01 class=Sequence position=Chr05:720496..722817 (- strand)
CAAAACCAAA ACCCTACAAC GAGAAGTCGC AACAGCGAAA GGGTTAAGCA AAGAGAAAGA AGAACTTCAA AATGCCGAAG
TCGAAGAGAA ATAAACAAGG TATGTGCGTT TCGTTACTCT CAATCCTTAT TCTGTAGTTA TAACTTTGAT GTTGTTGTTG
CTGCGTGTGA TCTAAATTGG AAGCGAAAAC GATGGTTTTG TTGATGTATC TGAAAAAACG CAGTTACGCT ATCGAAGACG
AAGAAGAAGG GAAGGGATCA TAAAGAGGCG ATTGTGAATG GAATAAAGGA GGCTGCAGAA AAGTACGAGT GCGTATACGT
GTTCTCGTTC GAGAACATGA GGAATCAGAA ATTCAAGGAG TTTAGGGAAC AGTTGAAATC TAGTAGCAGG TTCTTTCTTG
GCTCTAACAA GGTAATGCAA GTTGCCTTAG GTCGCTCCGC CGCCGATGAG ATCAGTCCCG GCATTCATAA GGTTTCAAAG
GTTGCATTCT TACTCCTTTC TTTCCAGTTT CAATCCATAA TTTATATTTA ATTTTTGTAT ACTAATTATA TACTTTTTGT
TCTTTTAGCT ATTGCGCGGA GATGCTGGCA TGGTTTTTAC GAATTTGTCT AAGGAAGAGG TTGAAAGGTA TAGGGAACAC
TGAAAATAAA ATGCTATGTA TTATCTTTTT ATGTTATCAA TATATGTATA TGTTTTATAT CCTTATCTGT TCACAGCTTT
TTAATGTAGT AAGATTAAAA GTCTAGGTAT TTATGGTAAT GAGCAAATTT ACGAGTCGTA TGTAGGGCAT GTCTTTACGT
TCTGTGATTT TTCAACTATG TAGTCATTCT AGGTGTCCTA TTTTCTTTCT CAGGCAGATT TGAGTTTTGT TGGTTCCTTT
GCAGGCTGTT TAAGGAATTT GAAGAATACG ATTTTGCAAG AACAGGAAGC CTTGCCACGG AAAAGGTGTT TAGAGTCTAT
TCCTTTTGTA ATTCCTGACT TTTCCATTCA AAGGCTGTGT AGTGGAAACT CTTCATAGAC CATTTGTCTT TCATAATCGT
TGGGTACTTC ATTCAATCCT AATTTACGAA TTCACACATT CACTGTCTGA GTGTTGTAGG TTGATCTCAA AGAGGGACCC
TTGGAGCAGT TTACGCATGA GATGGAACCT TTTCTACGAA AGCAAGGCAT GCCTGTTCGA TTAAACAAAG GTACTTTATT
GCAATGTTTT GTAACTTCGG TATAAAGGCA CCTGACCAGT GGACATGCTT CATTGTTTTT TCCAATATTT ACAGGAGTTG
TGGAGCTTGT TTCCGATTTT GTTGTTTGTG AGGAAGGGAA GTCATTGTCA CCTGAAGCTG CTCGTATACT GGTTAGTTAT
TTTTTTACTG TTTCCAGCAT CATCCATTCG ACTTGTTGTA ACATTTTTTA TAATGTTGGA AGACCTTTTT AATTGGCAAC
AACTATCTTT TTCGTTTTTT TGCGGGGAGT AACACTGCTT TTGGAGGAAA TATAGCGCGC TTTAAGTTGA TGCTTCCGAT
TACTTTGCCT CTTTAAATTA CCCGTACTCT TTTCCAATTT TTTCCCGTAG TAGTCAATAA CTTGGGTTTG TAATAGGCAT
GCATTTCGTC CTCAGCCATA TCATTCTTGT CTCAGTCAAT TTAACAATTT AAGTGTTGGT AACTGAGACT ATAATGATGG
TGTACCATTA TTAGTACTCT GTGATTATGA AACTGACATG CTGACGTAAC GATTGTTTTT AATTGCAGCG TTTAATGGGA
ATCAAGATGG CTACATTTCG TCTTCACCTA ATTTGCAGGT GGAGTCGTGA TGACTTTGAG CTATACATCG ATGGACCGGA
TGAATCAGAT GTTGAATGCT CATAGTACCT CTTTTAAATT TAGAAGATTC ATGGAGCATC CCTCTAAAAA AAGTTTGAAC
ATTACGAGAT ATCACGCAAA TGTGATTTGA AGCTACAGTC TCATAGGGAT TATTGCATAA TGTATTTTAA GATGAGTTGA
TTTTTGGGAA TGTTTAGGAA TTCTGTGAAC TAGGTTGCGT GGTTAACAAG GAAGTGGTGT TATCTGTAAC TTTATGAAAA
AACTCAAATT ACTGTGATTC AGTTTTGATC TATTTAGATT TTTGTCTGCG GATATATATT TATTTTTATT AAATCACTTG
GATGGAGCTC ACTCTCGAAA GTTCCAATTT TTAATGGTAT GATTTTTGGT TTATATATTC TATCATGGAG AGTATTCAAT
CTGGTCCACG GATCTAATGA ATGGATTAAA AACATCTAGA CACAAAAGCA TAACATAAAA TGGGTTAAGG CCTCAATAGT
TT

>Vigan.05G011700.01
CAAAACCAAA ACCCTACAAC GAGAAGTCGC AACAGCGAAA GGGTTAAGCA AAGAGAAAGA AGAACTTCAA AATGCCGAAG
TCGAAGAGAA ATAAACAAGT TACGCTATCG AAGACGAAGA AGAAGGGAAG GGATCATAAA GAGGCGATTG TGAATGGAAT
AAAGGAGGCT GCAGAAAAGT ACGAGTGCGT ATACGTGTTC TCGTTCGAGA ACATGAGGAA TCAGAAATTC AAGGAGTTTA
GGGAACAGTT GAAATCTAGT AGCAGGTTCT TTCTTGGCTC TAACAAGGTA ATGCAAGTTG CCTTAGGTCG CTCCGCCGCC
GATGAGATCA GTCCCGGCAT TCATAAGGTT TCAAAGCTAT TGCGCGGAGA TGCTGGCATG GTTTTTACGA ATTTGTCTAA
GGAAGAGGTT GAAAGGCTGT TTAAGGAATT TGAAGAATAC GATTTTGCAA GAACAGGAAG CCTTGCCACG GAAAAGGTTG
ATCTCAAAGA GGGACCCTTG GAGCAGTTTA CGCATGAGAT GGAACCTTTT CTACGAAAGC AAGGCATGCC TGTTCGATTA
AACAAAGGAG TTGTGGAGCT TGTTTCCGAT TTTGTTGTTT GTGAGGAAGG GAAGTCATTG TCACCTGAAG CTGCTCGTAT
ACTGCGTTTA ATGGGAATCA AGATGGCTAC ATTTCGTCTT CACCTAATTT GCAGGTGGAG TCGTGATGAC TTTGAGCTAT
ACATCGATGG ACCGGATGAA TCAGATGTTG AATGCTCATA GTACCTCTTT TAAATTTAGA AGATTCATGG AGCATCCCTC
TAAAAAAAGT TTGAACATTA CGAGATATCA CGCAAATGTG ATTTGAAGCT ACAGTCTCAT AGGGATTATT GCATAATGTA
TTTTAAGATG AGTTGATTTT TGGGAATGTT TAGGAATTCT GTGAACTAGG TTGCGTGGTT AACAAGGAAG TGGTGTTATC
TGTAACTTTA TGAAAAAACT CAAATTACTG TGATTCAGTT TTGATCTATT TAGATTTTTG TCTGCGGATA TATATTTATT
TTTATTAAAT CACTTGGATG GAGCTCACTC TCGAAAGTTC CAATTTTTAA TGGTATGATT TTTGGTTTAT ATATTCTATC
ATGGAGAGTA TTCAATCTGG TCCACGGATC TAATGAATGG ATTAAAAACA TCTAGACACA AAAGCATAAC ATAAAATGGG
TTAAGGCCTC AATAGTTT

>Vigan.05G011700.01
ATGCCGAAGT CGAAGAGAAA TAAACAAGTT ACGCTATCGA AGACGAAGAA GAAGGGAAGG GATCATAAAG AGGCGATTGT
GAATGGAATA AAGGAGGCTG CAGAAAAGTA CGAGTGCGTA TACGTGTTCT CGTTCGAGAA CATGAGGAAT CAGAAATTCA
AGGAGTTTAG GGAACAGTTG AAATCTAGTA GCAGGTTCTT TCTTGGCTCT AACAAGGTAA TGCAAGTTGC CTTAGGTCGC
TCCGCCGCCG ATGAGATCAG TCCCGGCATT CATAAGGTTT CAAAGCTATT GCGCGGAGAT GCTGGCATGG TTTTTACGAA
TTTGTCTAAG GAAGAGGTTG AAAGGCTGTT TAAGGAATTT GAAGAATACG ATTTTGCAAG AACAGGAAGC CTTGCCACGG
AAAAGGTTGA TCTCAAAGAG GGACCCTTGG AGCAGTTTAC GCATGAGATG GAACCTTTTC TACGAAAGCA AGGCATGCCT
GTTCGATTAA ACAAAGGAGT TGTGGAGCTT GTTTCCGATT TTGTTGTTTG TGAGGAAGGG AAGTCATTGT CACCTGAAGC
TGCTCGTATA CTGCGTTTAA TGGGAATCAA GATGGCTACA TTTCGTCTTC ACCTAATTTG CAGGTGGAGT CGTGATGACT
TTGAGCTATA CATCGATGGA CCGGATGAAT CAGATGTTGA ATGCTCATAG 

>Vigan.05G011700.01
MPKSKRNKQV TLSKTKKKGR DHKEAIVNGI KEAAEKYECV YVFSFENMRN QKFKEFREQL KSSSRFFLGS NKVMQVALGR
SAADEISPGI HKVSKLLRGD AGMVFTNLSK EEVERLFKEF EEYDFARTGS LATEKVDLKE GPLEQFTHEM EPFLRKQGMP
VRLNKGVVEL VSDFVVCEEG KSLSPEAARI LRLMGIKMAT FRLHLICRWS RDDFELYIDG PDESDVECS*