GBrowse Details

Vigan.04G426700.01

Basic Information:
Name: Vigan.04G426700.01
Multiple alignment
Variant Information
Position: Chr04:53359624..53362511 (- strand)
Length: 2888
Functional Information:
Description: Similar to protein Iojap-related, mitochondrial-like. [XP_004502322.1, Cicer arietinum]
InterPro: Protein Iojap/ribosomal silencing factor RsfS (IPR004394)
Oligomerisation domain (IPR025656)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.21,0.07,0.15,0.00,0.00,3.55,0 .05
Arabidopsis thaliana homolog: AT1G67620.1
Automatic updates:
Name: NM_001250317 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500386 (LOC100500386), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:53359624..53359859 (- strand)
Length: 236
Type: three_prime_UTR
Position: Chr04:53359860..53359931 (- strand)
Length: 72
Type: CDS
Position: Chr04:53360525..53360622 (- strand)
Length: 98
Type: CDS
Position: Chr04:53361988..53362075 (- strand)
Length: 88
Type: CDS
Position: Chr04:53362203..53362487 (- strand)
Length: 285
Type: CDS
Position: Chr04:53362488..53362511 (- strand)
Length: 24
Type: five_prime_UTR

>Vigan.04G426700.01 class=Sequence position=Chr04:53359624..53362511 (- strand)
GTTTGATTTG AGCGTGGAAC TGGAATGTGG GGGCTTCTTC GAACTAGAAC GTGTTTGCGA TATTCAGAGG CCCTTCTTCT
TCATCAACCA TGGAAGAAGA AGGTAGGGTT CTGTTCTTTG TCCGCCGTTG ACAGCCGTAA TTGCCTTCTG GATCTGCCGG
AGATCGAGAA GGTTCTGACG GATATCAAAG CTGACGACGT TAAGGTGATA CCGGTTCCCA AGCACTGCGA TTGGGCCGAT
TTCATGGTTC TCGCCACTGG CAGGTCCACC TGGCACGTCA AGAACATAGC CCAAGCCCTA ATTTACAAGG CACCACACCC
TCCTTCCTTC GTCCTTTTTA TCGCTATATT TGCATTATTG ATTTTCGATT GAAACTCAAA AGTGGTTTTC ATTTTTGTTT
TTCTTCCGAC TTATGTATAT TTGTGTAATT AACCAGGCCA AACAGAAACA GAGAGGAGCT GAACGAATGA TGCTACCGAG
TGTAGAAGGT GAAGAGGGAG GAAAGTGGAT AGTCATTGAC TCTGGTATCT CGTGCTTTTG TAATCATTTT TGTGTTCATT
TTGTTGAGTT TAGAAAATCC ATTAGGGGTC GTTTGGATAA TCTTCTTCAA TAGATAGTTT TTTTCGGTTA AAATTAATTT
ATACATACCC AAATTTGTAG AATTGTTCTT ATATAACTTT TTGTTTTTGT TTTTTTTTAT CTTTTACTTT GTGCAATGAG
CTAATTTAAC TTACCTTCTC TTTTTTAATT TTTCTCACCT AAAGTCATTT TGAAGAAATT TGTCCAAACA GAACTCCAAG
TAAAGAAAAT TGCAGTAGTG ATAATGGCTG ATAACAGATA CAATGTCATG AATTAGCATC TTGACTGCAT TTGCTAAATG
TTCTGTTCTT TTAGGAATGT TAGGTATTCA CAGGCCTTTC CAATAATTAA TATTTACGAA GAACAAGTTT ACTATCTTTA
ATGGGGTCTT CTTTTTCAGA GACGTCTATT CCATCCACAC GATAGATGTT GTGTGATGTT ATAAATTAGT AAACCAATAT
GCAGATACTG GTTGAAACTC ACATCAGAGA GCTACTGATG CAGTTTAAGT GGAGACTTAT ACTCTATCCT AGCTAATTGA
TTATGCTACC TGTGTGACAA ATTACTAGTT CGTTAGTACT AGAAAGTTGT TAAATTAACT TGTTGGTTCC ACAACATTAT
TGTCTCAGCG TATGTTGCTC TGCGTGATAT TCATTAAATC AAACAAGATA ATGAGTTTAG TCTCAGCATG GTATCAGTTT
CTACACTCTC CAACCTCTGA TTTTCTTTCT TGCACTTATT CCAGTTTCTT CACTGGTGAA TGGAGCCAGC GAATTACCAT
TCTTGGGTGA TTAGGGATGA CAAGGTAAGA CGGGTCATGT GAGCCGGCCC ACAACCTGCT GTAAAAAGGT GTGGGTAGGC
TGGACATTTA AGCCCGTCAA TCTGCATGGG GCAATATAAC CTGCAGCCCA TTGGCCAAAG TGTGGGTGAG CCTGCCCCTC
AACATGCATG ACTCTTCTAT TGAAGAATTA ACTGAATTTT GTCTGTTACA ACTAATCTAA CATTGTGGTT TAATTCTTTT
TATCTACTTC GGGAGGTGTT GCAATTTAGT GATTCTTTCA TGTTAACTTT TCATTGCTCA GCGCATGCGG TGGCTTGACA
AGGCTTCGGG GAAAAAATTA CTTTGTTAGT CTGGGTTTAA TAGGTCTTTT CTCTGTCACT TTCCTTCTAC CAGTCTATTA
TTTTTGGTGA TGTATGATTT GCTAGATCGG TGAACATTGC TTTTTATGTT ATGAAAACTT TCAATTATTG GATTTATAGT
TCTAACATGC CTTGCTTTTC CTTTTTGTTT CATTTTTTTT TATGTTTAGG TAAAGTGATA GTTCATGCAC TTGATGAAAA
GGCCAGAGCT TACTACAATT TGGAGGGTCT TTGGACCCGA GGGACAAGTC AAAATGAACC TGATGGGGTA AGTATGAGGC
TAGCTTATAT TCGTTTTAAG TTGTAAGATA GTTAGATATA GTTTGGGTTT GTTACAGGTT TACTATTTAA TCATTTTTTG
ATTTATAGCT TATATTTACA CTGTCATACC TACCAAATTT TTTATTGGTT AATAGTGTAG ATAACAGCGC ACCAAATAAA
ACTCAATTTG AAAACCATTA AGTGGAATTC ACCATTTCTT ACTTCTGTGC CTGCCACCTT AACATTCATT CACTACTTGG
ATTTATATTA TGATGGTATT GCCACACCAA ATCTTCCTAT GGATTAGGCG TTGTGATTGA GGCCAATTCC TGTACCAGTT
TGTGTCAAGA GTAGTTCAAA ATGGTACTTT AAGTTATTCT TGGTGGAGGT CTTAGAGCAG GCATTCGATC GGTTTTGGGG
GCTCGCGCGA GTTATCTGAT TAGGCTTATG TTAGTGTATA TGGCTTGGTT CAACTGGGCT TGAGCAATTA TATAGACATA
TGTCTTTATT ATTTTTATTA TGATGATGAA TATGTATTCT TGAAATAAAT ACTGTAGGAT GAATGATTCG AATGATCATT
TTTCTTTTTA CTGATTGTAG GATTTACAAA AAGCTTTGGT GAAGGTTCGT CGAAAAAACA ATTCGAAGAA ACCTGCACAA
AAGAATGCTT AATTGGTGTC TCAATGTAAA CAACCTTTTA AAACTGTAGC TTCTGACTGC ATCTGATCTA GACAATTTAG
AAGTTTGTAT ACATATCACG GTTTTCTGAT CTGTTATTTT AGTTGTTTTG AATACAAATT TTGCTAGGGT TGTCTAGCTG
CAATGGTAAA GATAGAAAAG AGGTAACATT GAAGCTGTCC ATCATCATGC ACTCCACTTT TATTTTTGGT GAGTCATGAA
TCGTTACC

>Vigan.04G426700.01
GTTTGATTTG AGCGTGGAAC TGGAATGTGG GGGCTTCTTC GAACTAGAAC GTGTTTGCGA TATTCAGAGG CCCTTCTTCT
TCATCAACCA TGGAAGAAGA AGGTAGGGTT CTGTTCTTTG TCCGCCGTTG ACAGCCGTAA TTGCCTTCTG GATCTGCCGG
AGATCGAGAA GGTTCTGACG GATATCAAAG CTGACGACGT TAAGGTGATA CCGGTTCCCA AGCACTGCGA TTGGGCCGAT
TTCATGGTTC TCGCCACTGG CAGGTCCACC TGGCACGTCA AGAACATAGC CCAAGCCCTA ATTTACAAGG CCAAACAGAA
ACAGAGAGGA GCTGAACGAA TGATGCTACC GAGTGTAGAA GGTGAAGAGG GAGGAAAGTG GATAGTCATT GACTCTGGTA
AAGTGATAGT TCATGCACTT GATGAAAAGG CCAGAGCTTA CTACAATTTG GAGGGTCTTT GGACCCGAGG GACAAGTCAA
AATGAACCTG ATGGGGATTT ACAAAAAGCT TTGGTGAAGG TTCGTCGAAA AAACAATTCG AAGAAACCTG CACAAAAGAA
TGCTTAATTG GTGTCTCAAT GTAAACAACC TTTTAAAACT GTAGCTTCTG ACTGCATCTG ATCTAGACAA TTTAGAAGTT
TGTATACATA TCACGGTTTT CTGATCTGTT ATTTTAGTTG TTTTGAATAC AAATTTTGCT AGGGTTGTCT AGCTGCAATG
GTAAAGATAG AAAAGAGGTA ACATTGAAGC TGTCCATCAT CATGCACTCC ACTTTTATTT TTGGTGAGTC ATGAATCGTT
ACC

>Vigan.04G426700.01
ATGTGGGGGC TTCTTCGAAC TAGAACGTGT TTGCGATATT CAGAGGCCCT TCTTCTTCAT CAACCATGGA AGAAGAAGGT
AGGGTTCTGT TCTTTGTCCG CCGTTGACAG CCGTAATTGC CTTCTGGATC TGCCGGAGAT CGAGAAGGTT CTGACGGATA
TCAAAGCTGA CGACGTTAAG GTGATACCGG TTCCCAAGCA CTGCGATTGG GCCGATTTCA TGGTTCTCGC CACTGGCAGG
TCCACCTGGC ACGTCAAGAA CATAGCCCAA GCCCTAATTT ACAAGGCCAA ACAGAAACAG AGAGGAGCTG AACGAATGAT
GCTACCGAGT GTAGAAGGTG AAGAGGGAGG AAAGTGGATA GTCATTGACT CTGGTAAAGT GATAGTTCAT GCACTTGATG
AAAAGGCCAG AGCTTACTAC AATTTGGAGG GTCTTTGGAC CCGAGGGACA AGTCAAAATG AACCTGATGG GGATTTACAA
AAAGCTTTGG TGAAGGTTCG TCGAAAAAAC AATTCGAAGA AACCTGCACA AAAGAATGCT TAA

>Vigan.04G426700.01
MWGLLRTRTC LRYSEALLLH QPWKKKVGFC SLSAVDSRNC LLDLPEIEKV LTDIKADDVK VIPVPKHCDW ADFMVLATGR
STWHVKNIAQ ALIYKAKQKQ RGAERMMLPS VEGEEGGKWI VIDSGKVIVH ALDEKARAYY NLEGLWTRGT SQNEPDGDLQ
KALVKVRRKN NSKKPAQKNA *