GBrowse Details

Vigan.04G420200.01

Basic Information:
Name: Vigan.04G420200.01
Multiple alignment
Variant Information
Position: Chr04:52890295..52894597 (+ strand)
Length: 4303
Functional Information:
Description: Similar to Uncharacterized protein. [I1MYQ4, Glycine max]
GO: Biological Process: GTP catabolic process (GO:0006184)
Biological Process: intracellular protein transport (GO:0006886)
Biological Process: nucleocytoplasmic transport (GO:0006913)
Biological Process: signal transduction (GO:0007165)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Cellular Component: membrane (GO:0016020)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily (IPR001806)
Ran GTPase (IPR002041)
Small GTPase superfamily, Rho type (IPR003578)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, Ras type (IPR020849)
Small GTPase superfamily, ARF type (IPR024156)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.95,9.58,19.96,19.36,40.27,20.06,24 .38,28.27
Arabidopsis thaliana homolog: AT5G65270.1
Automatic updates:
Name: NM_001250446 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527786 (LOC100527786), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250446 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RAB GTPase RABA4a-like (LOC100527786), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:52890295..52890583 (+ strand)
Length: 289
Type: five_prime_UTR
Position: Chr04:52890584..52890816 (+ strand)
Length: 233
Type: CDS
Position: Chr04:52893753..52894191 (+ strand)
Length: 439
Type: CDS
Position: Chr04:52894192..52894597 (+ strand)
Length: 406
Type: three_prime_UTR

>Vigan.04G420200.01 class=Sequence position=Chr04:52890295..52894597 (+ strand)
CTGTAATAAA GCTGTTTTCA ACCATTCTTC CCTCCCTTTC ACTACACAAA TTTATTTTAT TTTATTCTCA ATAAAATCAA
TGAAGCTTAT AGGGACCAGC GCCCAATACC ATACCGCCAC GTGTCATATG AATCCCACTA CACTACTCTG TTCCACACTT
AATAATCCTC CAAATTAATC CAAGCATTAA ACAGTTGCTT AATCAATCGC CGACCAAGCT CAATTTGAAA TAGAAAGAGC
CACAAATTTG GGAGTGAGAA AGAAGGAGAA AGTGCATTTT ACCTGAATAA TGGCTAGTGC AGGAGGCTAC GGAGACGCGA
ACCAAAAGGT AGATTACGTG TTCAAGGTGG TGCTTATAGG CGATTCGGCG GTGGGGAAGT CGCAGATACT TGCGCGATTC
GCGAGAAATG AGTTCAGCTT GGATTCGAAG GCCACAATCG GTGTCGAGTT CCAAACCCGC ACTTTGGTGA TTCAGCACAA
GAGCGTCAAG GCTCAGATCT GGGACACTGC GGGACAAGAA CGGTTCTCTA TCTCTCCGTC TTCTACTTCT CTTCAACTAT
ACTATACTCT GTTATTTTCT ACTTGTTTCG TTTCGTTGTT TTTGTTCGAA GTAAAACCTA GAGGATTTTA GTGGAAGATT
TTGTAGATCT TTTTTGTCTT GTTAGGTTTT CGCTACGTAT TGTATCTGTT GATTGATATG CCTTTGAAAC AATAGCTACT
GATCAGTGCT TACCTTCTGT ATGCTCTGAT CGCGGCGAAT TATTACGCAG TTTAACTCTG AGTTAGATAC TTAGATGTTA
GATTTGTTTG CTGAGTTGAT CTACTCGTCT GGTCGTGGCC GGCGGAAGAC TTGATCCTCG GTTCAGTTTT TTTAGTGGTT
CAGCTTCGTG TTTTCCGCCA ACTTAGTCTG TAGTAGTGAG TCAAACCGAG TTTGACTTTG AATGTTTTGC GTGTCGCGGA
AGGATATTGA ACTTTGGAGT TTAATTTTTT GTGCTATCAT TGATTGCATG TTGACGTATC CTTGAAATAG TTTGACGAAT
GACCACAACA GAGGTCAGAA ATTAAAACCT AACTTCATCT TGTCACCAAC CTTTTGCACT TGTTTGGGAC AAACTCATGG
GTAGGGATCG TGTACCTCGA TGTCTTGTTG GACGTGGCAA GAACTCTACG ATTGTAGTCG GTGGATGTTT GAGTACGGAC
TTGAGGGACA TATAGATAGC CTATCTCATA TGAGTTTATA TGAGGTATTA GTCTGTTTGA AATTATTTTT TAGTGATAAG
TGAATTATCT CCACCTTATC TTTAAAGGAT TAGAAGATTA TCTATTGATT ATCCATCCTT ACATATAAGA GAATTACTGT
TGTTATCGAT TGGACATGTG TGGTGAGAGG GGTGACCTAA TTGGGCCATT TGGAACCGGA CTGGGGAGAA ATTATTAGGA
CTCGAACTAT TTAGATTTCC ATGTCTTTGG TTCCCGTCAA TGTTTATGCA ATACATTCAA ATTTTATAAT TACAAAAACG
AATTAATAAT GCTTAACCAT GTCTCATATA TAAAGACTAA TAGCGATCAC AATTGTCTCA GATCACCTGC CAATTTCGTT
TGGACGAAGG TCAGAACAAC ATCCCTTTTC TCAAGTTGTT TTGGGTTTTG TCAAGGTTTT CTTGCGACAA TTTGAGTATT
GATGTTGACT GTGTTGAACT CAAAGCTTGT TGGAAGATCC ATATCAACTA GAGATAAGAC AATTTCATAG TATATAAGTG
AGTGAAAACC TCATCTTATA AACCGATTTT GTGGGATTGA GTAAGACTTA AAGTTCACTT CAGTCATTAT TAAAGCCTAT
CTTAGCGAGA TTCATTGTTT GTTGGATATA TTGTTCAACC ACCTATCGGA TCACCTATTA ATGTTTACTA CCATGCACGA
GATATATATA TCTATATAAG TAGGTGCAAA TATCATTTAC AAGACGGGTT TTGTGGGTTT GACTTAAATT TAAAATCCAC
TTCTTAACAA AGCCAAGTAA AATTATGAAA TTTACTTGAG AAAGAAGTAA ATTCTATAGA ATAATTTTCA CAAGTAAAGA
TGTATGTGTC ACCTGACTGC CCTCTCAGAG TTTATACACC CTTTCATGGG ACATATTAGA ACCTCACTTG GAAGTGACAT
ATCTGTTAGA ATATTCCTAG TTCATATGTA GTGTGCTATT AGGACTTCGA GACTATAGTA ATCAGATTGA ATTGTCTACA
TATCCCAATA AAATCCTTAG AAATAATTTC TACAAATTTC TGTTCGGTGT TTGAATCTGT GTTGCACTGT TAATGCAAGT
GTATTTGGAA GGAGAATACC TGTGTAATGG ACCTGAAGGT TAAGAGTTAC CTATACAAAC TTGTGTTAAA CCTACCCTTT
GAAGGAATTC TGGTTGTACA CGGAGTGAGA ATAAACTCGT TGCTAGTAGG TAGGCCTATG ATTATATTTT GTACTATTCT
AAAAACCGTT TCTTCAATTT CTGGTATCTT TTGTGAAGTA ATTGTTGTTA ATGCCTATAG ATGCAAAATT TCATGTGCTA
ATTTGTTTAG TAGTATAAAC TTATTTCATT CTGTACAAGA GAGAGGAATG AAATTTGGAA TGAAATTTAT AAAGCAATTA
GGAGTACATT GAATTTTTTT CTACGTTTAT AAAGAGAAAT GAAATTTATA AAGCAATTAG GAGTACGTTG AATTTTTTCT
ACGTTTATAA TTAGCTGTCA TCATTGCTCA ATTTCCATGG GATTGTTCTT TTAAAATAAT TATTTCCCAG CTTTGTAGTA
TAACAGAATC GTTGGGTGTA AAACTCACGT ACGTTGAGAT CTCAACACAA ACAGAAGCAT CTGTGACCGA ATTGACCATC
CACATAAGTA GTATGTATAG ATTATGAATA TATGCAAAAA ATTTGCGCTT GAAGGGGGCT TGTGCGTGTT GCTAAAAGTT
TAACCCACAA ATTTAAATTA AAAAATTATC AATTTCTTAC TTCTTTGGCC CACTCTATAA TATCCTCTTT AGTATACAAT
TTTACTAGAG CATGTTGGAT GCGATCTTAT TTGTAGAGTA CTTTAGTTTT TTTTTTTTAC TAAATCGGAA ACGTGAGAGC
TTATCACTCA ATGAGTTTAA CTCTTTAGAG GAGGGTTATG AATAAAATAT TTGGCAATTA TGGTTGAGTA TATTTCTGTA
TGGGTAATCA TTGGAATTCA TCGGTATATT GTGAAGTTTA AAAAGTTAAA GCAGTATGTA TATTTTCAGC CTAGTTATTT
TAATTTGCTG GATGTTGTGA TCTTTTTGTA CGGTGTATAT TTTTAGGTTG TATGTGCTTT TTCAAACTTT ACACTGTTGT
CAAGTTTATC TCTGATCATT TCATGGTATC CAATACCCAT GGTTAACTTA CCATTACTCC GAATACTGAT TGCAGTTATA
AATGATTTTA TTCTACAGAT ATAGAGCAGT CACAAGTGCA TACTACAGGG GTGCTGTCGG GGCAATGCTG GTTTATGACA
TCACAAAACG TCAAAGCTTC GATCACATAC CTCGCTGGTT AGAAGAACTG CGTAACCATG CTGATAAGAA TATAGTCATT
ATTCTTATAG GAAACAAAAG TGATCTGGAG AACCAGCGTC AAGTACCCAC AGACGATGCA AAAGAATTTG CCGAGAAAGA
AGGCTTATTT TTCTTGGAGA CTTCAGCGCT GGAATCGACT AACGTTGAAA CAGCCTTCAT GACGGTTTTG ACAGAAATAT
TCAACATTGT TAACAAGAAG AACCTAGCGG CTGGTGATAG TCAGGGAAAT GGCAACTCAG CATCTCTGTC TGGTAAGAAG
ATTATTGTTC CTGGTCCTGC TCAAGAAATC CCCAAGGGGA ACATGTGTTG TCAGTAATCC TGACTTTATT TATAATTTGT
TTAAATTTTC TAGATTTTCA TGGTTGTGTT CCTATCACCA ATTTTTATTA GTCTGGTGCA TTTTATTTTG TATATTATTA
CATTATTTAA AATTTATTTT GCATGAGTTG CTCATTAAGA TCAAGAAAGG GAAGTAATTA AATGTTTTTA TCTGTTAGTA
GGAATAGAAT ACATGTAGGG CGGACTGAAA ATCATCATCC TGACAGTGCT GGTCTTCCTT GACTTTAAGC GTGCTGTTTT
AGATATGTTT ATTGTTATTT TTCAATTAAA TTAAAGTTTC ATCTCATTAA TCAGTGCTGA CCTTTGTTGT GCTGGATTTA
AAAAAAATAT TTTATTCAGA AAATAAAACA AAATAGTGGT AATAATTTAA GCTTAAATCT TTG

>Vigan.04G420200.01
CTGTAATAAA GCTGTTTTCA ACCATTCTTC CCTCCCTTTC ACTACACAAA TTTATTTTAT TTTATTCTCA ATAAAATCAA
TGAAGCTTAT AGGGACCAGC GCCCAATACC ATACCGCCAC GTGTCATATG AATCCCACTA CACTACTCTG TTCCACACTT
AATAATCCTC CAAATTAATC CAAGCATTAA ACAGTTGCTT AATCAATCGC CGACCAAGCT CAATTTGAAA TAGAAAGAGC
CACAAATTTG GGAGTGAGAA AGAAGGAGAA AGTGCATTTT ACCTGAATAA TGGCTAGTGC AGGAGGCTAC GGAGACGCGA
ACCAAAAGGT AGATTACGTG TTCAAGGTGG TGCTTATAGG CGATTCGGCG GTGGGGAAGT CGCAGATACT TGCGCGATTC
GCGAGAAATG AGTTCAGCTT GGATTCGAAG GCCACAATCG GTGTCGAGTT CCAAACCCGC ACTTTGGTGA TTCAGCACAA
GAGCGTCAAG GCTCAGATCT GGGACACTGC GGGACAAGAA CGATATAGAG CAGTCACAAG TGCATACTAC AGGGGTGCTG
TCGGGGCAAT GCTGGTTTAT GACATCACAA AACGTCAAAG CTTCGATCAC ATACCTCGCT GGTTAGAAGA ACTGCGTAAC
CATGCTGATA AGAATATAGT CATTATTCTT ATAGGAAACA AAAGTGATCT GGAGAACCAG CGTCAAGTAC CCACAGACGA
TGCAAAAGAA TTTGCCGAGA AAGAAGGCTT ATTTTTCTTG GAGACTTCAG CGCTGGAATC GACTAACGTT GAAACAGCCT
TCATGACGGT TTTGACAGAA ATATTCAACA TTGTTAACAA GAAGAACCTA GCGGCTGGTG ATAGTCAGGG AAATGGCAAC
TCAGCATCTC TGTCTGGTAA GAAGATTATT GTTCCTGGTC CTGCTCAAGA AATCCCCAAG GGGAACATGT GTTGTCAGTA
ATCCTGACTT TATTTATAAT TTGTTTAAAT TTTCTAGATT TTCATGGTTG TGTTCCTATC ACCAATTTTT ATTAGTCTGG
TGCATTTTAT TTTGTATATT ATTACATTAT TTAAAATTTA TTTTGCATGA GTTGCTCATT AAGATCAAGA AAGGGAAGTA
ATTAAATGTT TTTATCTGTT AGTAGGAATA GAATACATGT AGGGCGGACT GAAAATCATC ATCCTGACAG TGCTGGTCTT
CCTTGACTTT AAGCGTGCTG TTTTAGATAT GTTTATTGTT ATTTTTCAAT TAAATTAAAG TTTCATCTCA TTAATCAGTG
CTGACCTTTG TTGTGCTGGA TTTAAAAAAA ATATTTTATT CAGAAAATAA AACAAAATAG TGGTAATAAT TTAAGCTTAA
ATCTTTG

>Vigan.04G420200.01
ATGGCTAGTG CAGGAGGCTA CGGAGACGCG AACCAAAAGG TAGATTACGT GTTCAAGGTG GTGCTTATAG GCGATTCGGC
GGTGGGGAAG TCGCAGATAC TTGCGCGATT CGCGAGAAAT GAGTTCAGCT TGGATTCGAA GGCCACAATC GGTGTCGAGT
TCCAAACCCG CACTTTGGTG ATTCAGCACA AGAGCGTCAA GGCTCAGATC TGGGACACTG CGGGACAAGA ACGATATAGA
GCAGTCACAA GTGCATACTA CAGGGGTGCT GTCGGGGCAA TGCTGGTTTA TGACATCACA AAACGTCAAA GCTTCGATCA
CATACCTCGC TGGTTAGAAG AACTGCGTAA CCATGCTGAT AAGAATATAG TCATTATTCT TATAGGAAAC AAAAGTGATC
TGGAGAACCA GCGTCAAGTA CCCACAGACG ATGCAAAAGA ATTTGCCGAG AAAGAAGGCT TATTTTTCTT GGAGACTTCA
GCGCTGGAAT CGACTAACGT TGAAACAGCC TTCATGACGG TTTTGACAGA AATATTCAAC ATTGTTAACA AGAAGAACCT
AGCGGCTGGT GATAGTCAGG GAAATGGCAA CTCAGCATCT CTGTCTGGTA AGAAGATTAT TGTTCCTGGT CCTGCTCAAG
AAATCCCCAA GGGGAACATG TGTTGTCAGT AA

>Vigan.04G420200.01
MASAGGYGDA NQKVDYVFKV VLIGDSAVGK SQILARFARN EFSLDSKATI GVEFQTRTLV IQHKSVKAQI WDTAGQERYR
AVTSAYYRGA VGAMLVYDIT KRQSFDHIPR WLEELRNHAD KNIVIILIGN KSDLENQRQV PTDDAKEFAE KEGLFFLETS
ALESTNVETA FMTVLTEIFN IVNKKNLAAG DSQGNGNSAS LSGKKIIVPG PAQEIPKGNM CCQ*