GBrowse Details

Vigan.04G418900.01

Basic Information:
Name: Vigan.04G418900.01
Multiple alignment
Variant Information
Position: Chr04:52762418..52767207 (- strand)
Length: 4790
Functional Information:
Description: Similar to uncharacterized LOC101221126. [XP_004156542.1, Cucumis sativus]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.19,0.24,8.03,5.61,34.89,5.81,36.02 ,8.37
Arabidopsis thaliana homolog: AT4G39900.1
Automatic updates:
Name: NM_001252999 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100788279 (LOC100788279), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:52762418..52762875 (- strand)
Length: 458
Type: three_prime_UTR
Position: Chr04:52762876..52762954 (- strand)
Length: 79
Type: CDS
Position: Chr04:52764051..52764159 (- strand)
Length: 109
Type: CDS
Position: Chr04:52764872..52764947 (- strand)
Length: 76
Type: CDS
Position: Chr04:52765088..52765372 (- strand)
Length: 285
Type: CDS
Position: Chr04:52766121..52766179 (- strand)
Length: 59
Type: CDS
Position: Chr04:52766278..52766386 (- strand)
Length: 109
Type: CDS
Position: Chr04:52766914..52766937 (- strand)
Length: 24
Type: CDS
Position: Chr04:52766938..52767207 (- strand)
Length: 270
Type: five_prime_UTR

>Vigan.04G418900.01 class=Sequence position=Chr04:52762418..52767207 (- strand)
TGAAGGGTTC GTCGTTATGG TCGACGTCGT AGTCAGAAGT CTTTATGGCA AATCGCGCAC ACTGTAGAGT ACTATGATAT
GTATGTATGT ATGTGATGTG TAGTATAGTT CCTACAAATT CAGACCTTCG TCTTCAGTTC AGTTCCTCCT TAATAATATA
ACAATGTAAC GTTCAAATTC GACTCCAATC TCAATTGCAT TCTCTTTCCT CTCATTTTCC CCTTTTCCCT CTTCCTCGCA
ACAACCTAAC ACTCTCTTTT CACGCCATCA ATGGCTGTCG ATTCCTCCGC TCAGGTAACA TTCTCAATCC TCTCTTAAAC
CTCAATCATC TCTCAAATTA CTAATTCTAA GCTGCATTTC GATTTGAACT GCACCTGCTA CTTTTCCGAC ATTTTGTTTA
TTTGAATCGG AATCTCAACT CGTGCCGTGT TTTTTACAAC TTGTTTTGGC TGTTACTTCC TGAATGCTAA CTGATTGAAG
AAATCGACGT TTGTGTGAAA TGTGGAACTA ACTACTTTCC AGCTTTGATG GAAAAAAGCA AGTTGAAAAG TCAGGGCGAG
AGTCACGTGA GAAAGTGAAA CCGCACGATT TTCGTTCTAG CTTGCATTCA TTACTTTACA GTTTAGAATT CAAGTTGATT
TGTTAAGAGT CTCTCACTTA AGATGCATGG ATTGAGCTGT TTTCTTCAGA TCGCGTTAGG TTGAAAGTTC TCGCTCTATG
AGCTATCACT CACCATTGAT TTACGAGTCA CATAGTTTAA TGCGTAGTTA ATTGAGATTT GGTAGTTTCC TTTTTCATCT
TTGGTCGCGG CTTGGTTGCA GAGAGAACAT CAAATTCGGG AGTTTGTGGA CGGGAATGGA AATGTCGCTG TCGGTTTGAA
GTCACATAAT AAACCGAGTA GTGGCGATCT TAACCAACAG TTTCCTCTAG GTAATTGTAC TAAATTAGAT CATTTAGCAA
TGTTGTGTGT TGTAGAAATG TCTTTGGTTT TTATTGCTCT TCATCCTGTT TTTTTTCCTC CACTTCAGAG ATTCCGCCGA
TACTGTTTGA AGATTCTTCC CTTCCAGCTG GATTGCAGAG TTCACATGTT GGTGCTTGCT TTCTCTGCAC TGATCTACTA
TTTGTTTTTA CCGAATTTTC AATTAGTTTT CTAGTTTAGG GAATCTTTTG TGGCTTAGTG GTTGGTATGA GTTTGTAATC
GGGTTTATCT TCTATAAGTA TGTGTTTGGT TAGAGTTGAA ATGGGAGAAA CAGTGCATTA AAGTCAGTTT AGTGCGTGCT
TGGATACATG TCCAACATGC ATGTATAACC AAATTTCCCC GTTAATTTCC ATCAGCATAC ACAGAAGCTA AAATATTATG
CTTTTGGTAG ACGCATGAAA GAACTGATGT GAAGGAAAAC CAACACACTA TCAGTTTCTT GGCAGGCATG TCCTTGCTTC
GAAACCAAAT CAATTTGTGC TAACTGGCAT TTAAGTTTTG ACGGGTCCAG GGTGTCAGGA GATACATGTT ACCCTACGTT
TTTGGTAACA GTTAATGTTA CTGAGAACCA TAAGACTGAG GAGAGAGGAT CAAAATCTTT TTATCTAATC ATGCTTCACA
CTGATCTATC CTGATTATAA GAAAAAACGT TTGGACCTAG ATTCCTTTTA GTTTTGGGTT TTTTGTTACC CTGAAACGTA
AGTCACTGAA GATCCTTTTT CTATAACTGT CAATGTGTTA ACTTCCTTTC ATATTTGAAT TTTGAATCAC TTGACCATCT
TTATGACAAA TTGTTTTCTG GAAGTAGCTA AAAACATGAT ATTTTAGAAA CTCACGCCTT TTCCATTTAT GGCAGACTCG
AGACCTTTAT AGTATTTCTG TGTTGCCTGA GGAAGATGAA AGCGAAAAGT GTGCTTCACC ACTAGCTTTC TTAAGCATCT
TAGAGGTTCC TAATCAAGCT AAAAGTCCAA TGTGCTTAGA TTCTCCCATA AATTGCCAAA ACTGCATTGA TTTTCAAATG
AAGAATGAAG ATGTGTATTC CCAGTGCTCG ATTGATATTC CTTGTGTGAA TGGAAATTCA GTTTTTCCTG AATCTTATGA
AGAGACAGTC GAATGTTTTA AAACTGGAAA CTCACCGACT GTAAGTCTCA TAAACTCATC TTCTTGACAG TTGTTTTTTA
AAATATCACA TAAAAGACAG CAGGCGCCCT TATAAAGCCA CATACACACA TGTCATCGTG TGTATTCTCT TAAGAGAATT
GATATTTTAC AATATTGCAG AGTGTACTTT GGAGAGAATC AAGTTTCAAA GGAGGAAAAC TTATGCAGAG TCTGGTCAAT
GTCAGCAATC CAAGAGGTAT GTCTGTTGTT TTTGGTACCG TACCTTAAAT TTTTTTCCAA TACAGATAAG TTCATATATT
TTTCTTTTAC TGGTAGTGAT TTTCGGAGAG CAATCGGAAT AGTTTAGAGC TGAAGGAAGT ATTATCCCGT GCAATACAGA
TAGGTTGCTT GACCAGAGAA TATATGCATA TAACATTTTG ATAAATAGTT CTAGCCTCGT GTAAGAAGGA ATAGAGAACT
TTCTACTCTC TGTCATTCAA AAGTATGAAC ACAATTGAAA CATATTTTTG GCCAATTTTA TATTATAATT TTGACTCGTC
CTGTAAAGCA ACGACACGAT TTCAGGTTTG CTAGTCATCT CAAAAGCAAA GCAGTAAAAT ATAAGTGGGT TTGGGTTTTG
TTCTGACATG ACCTTAACAA ACATATGAAA TACCATAGTT AAGAATAGAT ATGTTTAACT TGAACTTGAA GACAAGGGTA
TCATTCAAAA TTTAAATTGT TCAATATAGT TCTTTTGCTT CACATGGTTT GTTACTTCGT GAAGCCTTCA CAATCTTCTG
TGCTATATAA TTTGAAATTT CATTTGTCTT CCACCCATTT TTGCCATGTT CAAACTAGCA ATTACTCCCT TCTTGTACCT
GAACAGACTG TTACATTTTT GTGTTCTTGA ATTCAGCAGG TAAGTGATCT AGATGCACGT CTAACTTTCA TATTTTCTAA
TTTAACAGAT AAACCAATCT CTGAGAAGCT ACATGATTTA CCTAGTAACA GATGGAGAAG ATATAAACGT GCTGCCTCAT
TTGATTCCAG AAAAGTTGCT CTTCTGTTTT CAGTATTGTA AGTTCATATA CTAAACTTGT CCTTCAATAC TAAAATTTGT
TGTTATTTCA TGTGAATATT CTTTTTTTTT TTCTGGCAAG GTATTTTATA TAAATACTAT TTTTCACGAT TATATCAAAA
TAGTATATCT ATTCTTACTT AAATCTGCAT AACATATTAT ATACCTGTGG TGCTTCTTCA TGAATGTACA AAAGTTATAA
ATTATTTATA TATTTATTTA TTTGTATGTT TACATAAATT TCATGTTGAC CATAGAAAGA TTAAAATTAA CTTGCCAAAA
CTATACCTAC TCTTTAAAAC CTAATGAATG ATAAAAAGAG GGAAATTGCT GCTCTGCGTT GCATATCTCG TGGTTTTCGG
AGTTTACGAG AGATGCTACT TGTGGAATGC ATAATTGCAT TCATGAGAGA CTCCATGCCA CTTCTAGAAT CCAAACATGT
GTATCGTTGA AGGTAAAAAT TTCTCAATTA ATTTATCAAA TATATATTAA ATTATGGAAA GCTCAATCAA AAGAGCATTT
AACTAGTGAA ATACACTCAA AAAAATCATT CCTAGTCTAG TCAATGTTAC CAGCATTAGG ATGTTATTAA TTTGGTTAAA
CTTATAAATC ATTCATCCGT ATCCATCATT CACAATACTC ACTCGGTAAT TGGCCTCCAG CACAAAGTCG CTCAGCCTCC
ATAAAGCTTT AAAGCATTCC CTACCGTCCA TGCTAAACAG GGACAGGAGT TACATGTCAA GTTTTAGGTG TTATGTTCAT
CCGAGCAACT GATTTTTCCA GCTGAGTGTC TGTTTTTCCA TCCTTCTAGG CTTTGATTTG CCATACAAAG GTCCTTCTAT
GGAAAGAAAT GTTCTTACAC ATTTATCTGA GTGCAGGGTG CATCTAAGAC AACTATAGAC GGTGTATAAC TGGTTTCCCT
GTACACAGAA GTTTGATCTG TATTAAACTT TTGTTAAACA TTTACCTCTA CCTCATCTGA AACGATTACC AACTGATACC
AATTTTTTCT ACTTTCTATC TTTGACAATT TCTTTTCAGA TTTTCTTATT CGTTCTACAT ATAATCATAC GTGAAATTGA
TCAATTCCTG CAGGTCAAGT TTCGGAACAT TGGTGTTGAT ATATCTGACG TTGAGACTTA GGCAGAGAGC TGATGGCTTT
GCTCTTATTT GAAGTTCCAA TATTTGACAC CCACTGTTTT CAGATTTCTA AGCTTCTATG GTTTTGTGTA GTTTAAACTT
GCCCCTTGAT TTGTAATAGA GCTGCTTGTG ATGTTGAAAT TTAGAATCTA GGAAATTTTA TTTGGCACAA AATATAGTGG
CGCTTGTCTT TAAAGTCTAT TTTATTTAGT GACGTGTCTT CCAAATCATC AGTACAATCT AAAGATTAAG CCAGGAAAGC
CAAACAAAGA CCATCAATTG GAAAGATGCC AAAAAAGTTC GTGTAAATGG TGTGAAGATG CAGGGAATGA ACGTTGCGGA
GTGTTGTGAC TTGTGATCAT ATTTTCTTCA TTCTTCAGGG TCAACTATGG AAGCCGGAAA GACAGAATAA CGGATCCCAT
TGTATTTATG TTTATAGTTC CAAAAGACTA CTGAACTTTG TCTGGATTGA ACAGATTTAC ATTAAATCAA 

>Vigan.04G418900.01
TGAAGGGTTC GTCGTTATGG TCGACGTCGT AGTCAGAAGT CTTTATGGCA AATCGCGCAC ACTGTAGAGT ACTATGATAT
GTATGTATGT ATGTGATGTG TAGTATAGTT CCTACAAATT CAGACCTTCG TCTTCAGTTC AGTTCCTCCT TAATAATATA
ACAATGTAAC GTTCAAATTC GACTCCAATC TCAATTGCAT TCTCTTTCCT CTCATTTTCC CCTTTTCCCT CTTCCTCGCA
ACAACCTAAC ACTCTCTTTT CACGCCATCA ATGGCTGTCG ATTCCTCCGC TCAGAGAGAA CATCAAATTC GGGAGTTTGT
GGACGGGAAT GGAAATGTCG CTGTCGGTTT GAAGTCACAT AATAAACCGA GTAGTGGCGA TCTTAACCAA CAGTTTCCTC
TAGAGATTCC GCCGATACTG TTTGAAGATT CTTCCCTTCC AGCTGGATTG CAGAGTTCAC ATACTCGAGA CCTTTATAGT
ATTTCTGTGT TGCCTGAGGA AGATGAAAGC GAAAAGTGTG CTTCACCACT AGCTTTCTTA AGCATCTTAG AGGTTCCTAA
TCAAGCTAAA AGTCCAATGT GCTTAGATTC TCCCATAAAT TGCCAAAACT GCATTGATTT TCAAATGAAG AATGAAGATG
TGTATTCCCA GTGCTCGATT GATATTCCTT GTGTGAATGG AAATTCAGTT TTTCCTGAAT CTTATGAAGA GACAGTCGAA
TGTTTTAAAA CTGGAAACTC ACCGACTAGT GTACTTTGGA GAGAATCAAG TTTCAAAGGA GGAAAACTTA TGCAGAGTCT
GGTCAATGTC AGCAATCCAA GAGATAAACC AATCTCTGAG AAGCTACATG ATTTACCTAG TAACAGATGG AGAAGATATA
AACGTGCTGC CTCATTTGAT TCCAGAAAAG TTGCTCTTCT GTTTTCAGTA TTGTCAAGTT TCGGAACATT GGTGTTGATA
TATCTGACGT TGAGACTTAG GCAGAGAGCT GATGGCTTTG CTCTTATTTG AAGTTCCAAT ATTTGACACC CACTGTTTTC
AGATTTCTAA GCTTCTATGG TTTTGTGTAG TTTAAACTTG CCCCTTGATT TGTAATAGAG CTGCTTGTGA TGTTGAAATT
TAGAATCTAG GAAATTTTAT TTGGCACAAA ATATAGTGGC GCTTGTCTTT AAAGTCTATT TTATTTAGTG ACGTGTCTTC
CAAATCATCA GTACAATCTA AAGATTAAGC CAGGAAAGCC AAACAAAGAC CATCAATTGG AAAGATGCCA AAAAAGTTCG
TGTAAATGGT GTGAAGATGC AGGGAATGAA CGTTGCGGAG TGTTGTGACT TGTGATCATA TTTTCTTCAT TCTTCAGGGT
CAACTATGGA AGCCGGAAAG ACAGAATAAC GGATCCCATT GTATTTATGT TTATAGTTCC AAAAGACTAC TGAACTTTGT
CTGGATTGAA CAGATTTACA TTAAATCAA

>Vigan.04G418900.01
ATGGCTGTCG ATTCCTCCGC TCAGAGAGAA CATCAAATTC GGGAGTTTGT GGACGGGAAT GGAAATGTCG CTGTCGGTTT
GAAGTCACAT AATAAACCGA GTAGTGGCGA TCTTAACCAA CAGTTTCCTC TAGAGATTCC GCCGATACTG TTTGAAGATT
CTTCCCTTCC AGCTGGATTG CAGAGTTCAC ATACTCGAGA CCTTTATAGT ATTTCTGTGT TGCCTGAGGA AGATGAAAGC
GAAAAGTGTG CTTCACCACT AGCTTTCTTA AGCATCTTAG AGGTTCCTAA TCAAGCTAAA AGTCCAATGT GCTTAGATTC
TCCCATAAAT TGCCAAAACT GCATTGATTT TCAAATGAAG AATGAAGATG TGTATTCCCA GTGCTCGATT GATATTCCTT
GTGTGAATGG AAATTCAGTT TTTCCTGAAT CTTATGAAGA GACAGTCGAA TGTTTTAAAA CTGGAAACTC ACCGACTAGT
GTACTTTGGA GAGAATCAAG TTTCAAAGGA GGAAAACTTA TGCAGAGTCT GGTCAATGTC AGCAATCCAA GAGATAAACC
AATCTCTGAG AAGCTACATG ATTTACCTAG TAACAGATGG AGAAGATATA AACGTGCTGC CTCATTTGAT TCCAGAAAAG
TTGCTCTTCT GTTTTCAGTA TTGTCAAGTT TCGGAACATT GGTGTTGATA TATCTGACGT TGAGACTTAG GCAGAGAGCT
GATGGCTTTG CTCTTATTTG A

>Vigan.04G418900.01
MAVDSSAQRE HQIREFVDGN GNVAVGLKSH NKPSSGDLNQ QFPLEIPPIL FEDSSLPAGL QSSHTRDLYS ISVLPEEDES
EKCASPLAFL SILEVPNQAK SPMCLDSPIN CQNCIDFQMK NEDVYSQCSI DIPCVNGNSV FPESYEETVE CFKTGNSPTS
VLWRESSFKG GKLMQSLVNV SNPRDKPISE KLHDLPSNRW RRYKRAASFD SRKVALLFSV LSSFGTLVLI YLTLRLRQRA
DGFALI*