GBrowse Details

Vigan.04G397800.01

Basic Information:
Name: Vigan.04G397800.01
Multiple alignment
Variant Information
Position: Chr04:51055508..51057586 (+ strand)
Length: 2079
Functional Information:
Description: Similar to Ribosomal protein L19. [E9NZT0, Phaseolus vulgaris]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L19/L19e domain (IPR000196)
Ribosomal protein L19/L19e, domain 1 (IPR015972)
Ribosomal protein L19/L19e, domain 3 (IPR015974)
Ribosomal protein L19/L19e conserved site (IPR023638)
Ribosomal protein L19/L19e (IPR027547)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:203.34,269.37,108.78,75.69,167.93,228.34,108.59,78.06
Arabidopsis thaliana homolog: AT3G16780.1
Automatic updates:
Name: NM_001250460 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527275 (LOC100527275), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:51055508..51055690 (+ strand)
Length: 183
Type: five_prime_UTR
Position: Chr04:51055691..51055802 (+ strand)
Length: 112
Type: CDS
Position: Chr04:51056170..51056292 (+ strand)
Length: 123
Type: CDS
Position: Chr04:51056763..51057076 (+ strand)
Length: 314
Type: CDS
Position: Chr04:51057208..51057263 (+ strand)
Length: 56
Type: CDS
Position: Chr04:51057352..51057376 (+ strand)
Length: 25
Type: CDS
Position: Chr04:51057377..51057586 (+ strand)
Length: 210
Type: three_prime_UTR

>Vigan.04G397800.01 class=Sequence position=Chr04:51055508..51057586 (+ strand)
GGTTAGGTTA ACAAGCTAAA GTGCTGGGCC CATATGACAG TCCACAAACA ACAAATGGTC TGGGTCTGAT TAGGCTCAGC
CCAATCTTGA TATTTGGGCT TTAGACATTG TATTTATACA CTGACAACAA AAAATGAAAT TAGGGTTTTG TTCTCCCCGT
TGCAGCATCA GAGAAGGGGA AACATGGTTT CGCTGAAACT GCAGAAGCGG CTTGCAGCCA GCGTGCTCAA GTGCGGAAGA
GGAAAGGTGT GGCTTGACCC CAATGAAGTC AACGACATCT CCATGGCCAA TTCTCGTAAT TATGCTCACC CTTTCTCTTA
ATCACCATCA TATATCTTCG CCTTGTTTAT CAGTATTATT GTCTTTATTT ATTATTATTT ATTTTTCTTA TCTAAGCGTT
GAAAATGGAG GACTTATTGT TCGATCCGAA GTTTATTGTT GTTTGCAGTA TTATATTTCT CGTAATATTA GATTGTATGC
ATTTTTCTAT ATGTAATCGG TATTTGAACT GTTCTTAAGT TAAATAGTGC CTACTATCTG CAGTGTGAAA TGGGTTTGGT
ACGTGTGAGC ATTTGCTAAG ATTTTTTCAA AATCCTTGAG TTGTTTCATC GTGTAATATG AACACGTATT TTTTACTTAA
TATGGTAGGT TTCACTTTGC AGGGCAAAAC ATCAGGAAGT TGGTTAAGGA TGGGTTTATC ATTAGGAAGC CAACCAAGAT
TCACTCCCGA TCACGTGCTC GTAGGATGAA GGAGGCAAAG AGGAAGGGCC GTCATTCTGG ATATGGTAAT TATTCCCAGT
AACTTGCTTA ATGTAAAATA AATTACAAAC GAGCAAGAAT TAACAGCTAC ATACAGGAGA ATAAAACTAG AAGATAAAAT
GAATTAACTG ATTGTTATTA GTTTGTTTTT TCCGAAAGAT GATTTTAATT TATGCATTAA CTTGGGAAGT ACATTTGTTT
ACAAGGGTTT ATTGAAAAAT TTATCTATAG AAAACGAAAT TTCAGGCTGT TGGACATGTT TATATAGAAC GTATGGTTAT
GGTCTTCTTG TCACTGGTCA TCGCCAACTG CCAGGATTTT TCTAAGTTGG TAATTCAGGG AATTACGAAT TTGCTTGTTA
GTTTGTGAAG GAAGACAGAT TCTTATTTTA TTCTAATTAT TGTTGGGTGG CATAGGAGTT ACTCTTTTGT CCTCTGGAGA
GAGGGGTTGG AAGAGTGTCG GTGGCTTCTT ATAATGTTTA TGTGAATACT ATTAGGTAAG CGTAAGGGTA CAAGGGAGGC
AAGGCTTCCC ACAAAGATAC TCTGGATGAG AAGGATGCGT GTGCTCAGAC GGTTGCTTCG CAAGTACAGG GAGTCAAAGA
AAATTGACAA ACACATGTAC CATGATATGT ACATGAAGGT CAAAGGTAAT GTTTTCAAAA ACAAGAGGGT TTTGATGGAG
AGCATTCACA AGTCTAAGGC TGAGAAGGCC AGAGAGAAGA CCTTGTCTGA TCAGTTTGAG GCTAAGCGTG CAAAGAACAA
GGCTAGCAGG GAACGGAAAA TTGCACGGAG GGAGGAGCGC TTAGCCCAAG TGAGTTTCAG TGTCTTGGAA TATATGTACT
TGTGTTTTTT TTATTAAAAT CGGCGATTTG CTGCACCATG AGCGTGTTCA CTGAAGTTGG AAATGAAGAT TTTGACAAAT
TTTCATTGTT AAATGTTTAG GGTCCCGTTG ATAAGGCATC TACAGCACCC AGTGCCCCAG CACCCCAACC TGCCCAGTGA
GTCTTACTGT TTTTGCTTAT TATGCTATAT ATGTAGTTTT TGGTTCTTGA TGAACTTTGG CTTACTTGTA TATCTTTTAT
GCAGAGCGCC AAAGAAATCC AAGAAGTGAG TATTTTTGAT GAATCTTTGA CTGTACCCGA AATTTTCTCT GCAAAAATAG
TTACGAGGAG TATGTTTCTA AACTTTTTTT TGTAAGTTTT GTTTGTACGA GAACATTTTA TCTTGTATAC TTTAAACTAT
ATGTTTTGTC AGTTTTTACT GTTTTACGTA TTAAGATTCA CTAGTTTTTT GAAGTACTTG TGTTATTCTT CTACTCGCG

>Vigan.04G397800.01
GGTTAGGTTA ACAAGCTAAA GTGCTGGGCC CATATGACAG TCCACAAACA ACAAATGGTC TGGGTCTGAT TAGGCTCAGC
CCAATCTTGA TATTTGGGCT TTAGACATTG TATTTATACA CTGACAACAA AAAATGAAAT TAGGGTTTTG TTCTCCCCGT
TGCAGCATCA GAGAAGGGGA AACATGGTTT CGCTGAAACT GCAGAAGCGG CTTGCAGCCA GCGTGCTCAA GTGCGGAAGA
GGAAAGGTGT GGCTTGACCC CAATGAAGTC AACGACATCT CCATGGCCAA TTCTCGGCAA AACATCAGGA AGTTGGTTAA
GGATGGGTTT ATCATTAGGA AGCCAACCAA GATTCACTCC CGATCACGTG CTCGTAGGAT GAAGGAGGCA AAGAGGAAGG
GCCGTCATTC TGGATATGGT AAGCGTAAGG GTACAAGGGA GGCAAGGCTT CCCACAAAGA TACTCTGGAT GAGAAGGATG
CGTGTGCTCA GACGGTTGCT TCGCAAGTAC AGGGAGTCAA AGAAAATTGA CAAACACATG TACCATGATA TGTACATGAA
GGTCAAAGGT AATGTTTTCA AAAACAAGAG GGTTTTGATG GAGAGCATTC ACAAGTCTAA GGCTGAGAAG GCCAGAGAGA
AGACCTTGTC TGATCAGTTT GAGGCTAAGC GTGCAAAGAA CAAGGCTAGC AGGGAACGGA AAATTGCACG GAGGGAGGAG
CGCTTAGCCC AAGGTCCCGT TGATAAGGCA TCTACAGCAC CCAGTGCCCC AGCACCCCAA CCTGCCCAAG CGCCAAAGAA
ATCCAAGAAG TGAGTATTTT TGATGAATCT TTGACTGTAC CCGAAATTTT CTCTGCAAAA ATAGTTACGA GGAGTATGTT
TCTAAACTTT TTTTTGTAAG TTTTGTTTGT ACGAGAACAT TTTATCTTGT ATACTTTAAA CTATATGTTT TGTCAGTTTT
TACTGTTTTA CGTATTAAGA TTCACTAGTT TTTTGAAGTA CTTGTGTTAT TCTTCTACTC GCG

>Vigan.04G397800.01
ATGGTTTCGC TGAAACTGCA GAAGCGGCTT GCAGCCAGCG TGCTCAAGTG CGGAAGAGGA AAGGTGTGGC TTGACCCCAA
TGAAGTCAAC GACATCTCCA TGGCCAATTC TCGGCAAAAC ATCAGGAAGT TGGTTAAGGA TGGGTTTATC ATTAGGAAGC
CAACCAAGAT TCACTCCCGA TCACGTGCTC GTAGGATGAA GGAGGCAAAG AGGAAGGGCC GTCATTCTGG ATATGGTAAG
CGTAAGGGTA CAAGGGAGGC AAGGCTTCCC ACAAAGATAC TCTGGATGAG AAGGATGCGT GTGCTCAGAC GGTTGCTTCG
CAAGTACAGG GAGTCAAAGA AAATTGACAA ACACATGTAC CATGATATGT ACATGAAGGT CAAAGGTAAT GTTTTCAAAA
ACAAGAGGGT TTTGATGGAG AGCATTCACA AGTCTAAGGC TGAGAAGGCC AGAGAGAAGA CCTTGTCTGA TCAGTTTGAG
GCTAAGCGTG CAAAGAACAA GGCTAGCAGG GAACGGAAAA TTGCACGGAG GGAGGAGCGC TTAGCCCAAG GTCCCGTTGA
TAAGGCATCT ACAGCACCCA GTGCCCCAGC ACCCCAACCT GCCCAAGCGC CAAAGAAATC CAAGAAGTGA 

>Vigan.04G397800.01
MVSLKLQKRL AASVLKCGRG KVWLDPNEVN DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARRMKEAK RKGRHSGYGK
RKGTREARLP TKILWMRRMR VLRRLLRKYR ESKKIDKHMY HDMYMKVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE
AKRAKNKASR ERKIARREER LAQGPVDKAS TAPSAPAPQP AQAPKKSKK*