GBrowse Details

Vigan.04G376400.01

Basic Information:
Name: Vigan.04G376400.01
Multiple alignment
Variant Information
Position: Chr04:49442750..49445638 (+ strand)
Length: 2889
Functional Information:
Description: Similar to Uncharacterized protein. [G7IAA5, Medicago truncatula]
GO: Biological Process: proteolysis (GO:0006508)
InterPro: Peptidase C15, pyroglutamyl peptidase I (IPR000816)
Peptidase C15, pyroglutamyl peptidase I-like (IPR016125)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:14.18,6.84,29.06,18.91,9.19,29.69,21 .31,16.29
Arabidopsis thaliana homolog: AT1G56700.1
Automatic updates:
Name: NM_001250393 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306599 (LOC100306599), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250393 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidase C15, pyroglutamyl peptidase I-like protein (LOC100306599), transcript variant 3, mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001361428 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidase C15, pyroglutamyl peptidase I-like protein (LOC100306599), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001361429 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidase C15, pyroglutamyl peptidase I-like protein (LOC100306599), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:49442750..49443393 (+ strand)
Length: 644
Type: five_prime_UTR
Position: Chr04:49443394..49443666 (+ strand)
Length: 273
Type: CDS
Position: Chr04:49444481..49444585 (+ strand)
Length: 105
Type: CDS
Position: Chr04:49444689..49444736 (+ strand)
Length: 48
Type: CDS
Position: Chr04:49445188..49445427 (+ strand)
Length: 240
Type: CDS
Position: Chr04:49445428..49445638 (+ strand)
Length: 211
Type: three_prime_UTR

>Vigan.04G376400.01 class=Sequence position=Chr04:49442750..49445638 (+ strand)
TTGTAAGACC CTCTCTCTCA ATCAAAGTTC CGTTGCGTTT TCTCCTTCAA TTTTGTTTTT GTTTTGTAAT TCATGGCTCT
TTGATCATTT GGGTGCTGAT AATAATCTTG TTCTTTATTT TGTTTTCTTT GGGTCTTGTG TTTATGGTTC TTTTTCGAGT
TCTGCTACAA TTCAGCGATG AACAAAGTGT TTTTCTTTCT TCGGAGACTG ATATTTATCT GGAAAGCGAA AAACTTTGGT
TCCGCATGCG ATCACCCTTC TTTGTACAGT CTTGAAACTG ATTTTTGTGT TGTTGTTGGT TACTGATATC TTAGATTAGT
GAATTAAGAG ATTATATGTT TAGACCCATT TCTTCAAAGT AGACTTCTTT TCTGGTAGTT TATGCAATCC ATCAACATTA
ATATTAGTAT CTGAACACGT TGAATCAAAG TTTGGTTGGT GTTTTCTTAA AAGGTTGGGA GGGTTTTAAT ATTTTCAGAA
GATGGAGATT AAGAACTGTA ATATATTTCG TTGGCTATGA TCCACCATGT AGAAAATATT TCAGTTTTTC TGTCTCATAA
AAGTTCAAAT TTATTGATGC AGGTATTTGG AAAGTAGTTT TGATTTGAGG CTCTAGTCAT TACCAGCTTT ACTGTATTTG
GCAAATGGGT TCTGAAGGTC CAACAACACC CATAACAACA ATTCATGTGA CAGGATTTAA GAAATTCCAT GGAGTTGCTG
AGAATCCGAC CGAAACAATT GTCAATAATT TGGCAGAGTA CATGAATAAG AAGGGTTTGC CAAAGGGTTT AGTTATTGGG
AGCTGCAGCA TTCTTGAAAC TGCTGGTCAA GGAGCACTTG TTTCACTGTA CCAGAGATTG CAATCCGCTG TTATTTCCAA
GGACTCTGAA TCTTCAAATT CTAATAGAAC TATTTGGGTG AGTGCCCCTG TACTTGACAT ATAGCTTCAC TGTTTGTTCT
CGTAGCTTAT TCATTCATTC TTCAATGTTG TTCATTTATG TAACCAAATC CTAATTTGTA CGTCTCAACA TATGTACCCG
CTGAACCTGG ACAAAATAAC GTTATTCTAG CTGAATTATA TCTGAAAAAA GAAATAAACT TATCATAAGA AATTAAATAT
GACCAAAAAG GAGACTATCA TTATTATCCG ACATCGTATA TAGCTCAATG AATATTCAGC GACATTCCTT GTGAATATCA
TTATGCAGCA ATGAAAGTCT GCAGTAACTG CAGAACAAAA AAGTCAGACT GCTCTAATAA TTTAAAATAA GCAACATTGG
CAGAGGGTAA CGTGGACAGG TTCTTCGTCA CTACTATAGT ACTCTCAGAA AAATTTGCTT ATTATATACT TTAGTATGCG
GAGTAGCAAT TCCTAGAGTA TGATATATTA ACTGATTGAC ACAAATATTA GTGTCTTAAG TTGACTCAGA CCATGTTCAG
ATGTATTGTT AACGACATTT TGTGATTAGA TCTCAAGGGA ATTTGAACTT GTCTTCATAA ACTTTAGCAC AAAGCTATAA
TGAAACTTGT GATGGACTTT CATTTTGAGT ACTTCTACAT ATTGATTCAA AAGCTGAACT ATAAAGATCA TGAATAAAGG
TTGAGCATCT GAATAAATTG TTGGCTAGGT TTTTGTTGCT TAGACTAGGA TACATCATAT GATCAATTTG AGTATATTTT
CATTTCTCCG TCCCTGTAAA TTCTGGCTGT TTCTGAGTTT TGTTTATTCA GCTGCATTTT GGGGTTAACA GTGGTGCAAC
AAGGTTTGCT ATAGAGAACC AGGCAGTCAA TGAGGCTAAT TTTCGATGTC CGGATGAAAT GGGTTGGAAG CCCCAGGTGA
GATTGGATTA GTGGATTCAT TCCAAATTTT CTTTCACCAA CAAACCTTTA GAAGTGCAAA GAGCATTCTC ACTGAAATTT
GCATAATTTT GTATTGCAGA AAGTCCCCAT TGTTCCTTCG GATGGTGGAA TTTCACGAAC AAGGGAGGTA AAATGAATCC
CTTATGTTGC ACGTACTCTT GATTCCTAAA CTAGTTACAC TCTTGGGCTT GGTGTTTAGT GCTAACATTG TAAAGTATTG
ATTACTACTA ACATAGAAGA GCATTTTTTG GGGTACCATT TGTAGTACAT TAAGGTGCTA TAAGTTTTGA TGGAACAGAA
GCAGCTGCTT ACTCCTTAAC GGTAGCCAAT TTTCTTATGC TGTTCTGAAA ATCGTCAGCA AATTCATTTT TAAACTCCTC
ATTTTGTCAA AAATAAAACG TAATGAGTTA TAGAGGAATT TAGTTTTGTG GGGTTTTGTG TCATTTCCTT GATGGGGAGC
CATAATTAAA TGTTATTAAT AATCCCATAA TTAGTATACA TAGACAACAT AAAGAAACCA ATTCAGAAAA CATATTTGTT
TCTGCTTACT AATGAGAATT CTACCTAACT CTGTGCAGAC TTCACTCCCT GTAGAGGAGA TCACCAAAGC CTTGACAGAA
AAGGGATACG AAGTTATGGT ATCAGATGAT GCAGGCAGGT TCGTGTGCAA TTACGTTTAC TATCACTCCC TTCGCTTTGC
CGAGCGGAAT GGAATCAAAT CCCTTTTCGT GCACGTGCCA CTCTTCTTCA CAATAAATGA AGAGACTCAA ATGAAATTCG
CTGCTTCCTT GTTAGAAGTT CTTGCCTCTA AATCTTAGAA GTATCATTAC ATTTGGACCC TCAAAAATGG GTGCTCCTAT
ATTCGTTCTG GTGTGAAAGT GGATGAATGT GTATCTTGAA TGAGATACTT ATAATAAAAT TATTGTATTT AAATGGAACC
ACATATGTTT CTGAGTTAAG GTTCCCTGTA CTTTGTGAAG ACAATTTGAT TGATACATCT TCAATGTTTA CCTTGTGAAT
AAATGTTCA

>Vigan.04G376400.01
TTGTAAGACC CTCTCTCTCA ATCAAAGTTC CGTTGCGTTT TCTCCTTCAA TTTTGTTTTT GTTTTGTAAT TCATGGCTCT
TTGATCATTT GGGTGCTGAT AATAATCTTG TTCTTTATTT TGTTTTCTTT GGGTCTTGTG TTTATGGTTC TTTTTCGAGT
TCTGCTACAA TTCAGCGATG AACAAAGTGT TTTTCTTTCT TCGGAGACTG ATATTTATCT GGAAAGCGAA AAACTTTGGT
TCCGCATGCG ATCACCCTTC TTTGTACAGT CTTGAAACTG ATTTTTGTGT TGTTGTTGGT TACTGATATC TTAGATTAGT
GAATTAAGAG ATTATATGTT TAGACCCATT TCTTCAAAGT AGACTTCTTT TCTGGTAGTT TATGCAATCC ATCAACATTA
ATATTAGTAT CTGAACACGT TGAATCAAAG TTTGGTTGGT GTTTTCTTAA AAGGTTGGGA GGGTTTTAAT ATTTTCAGAA
GATGGAGATT AAGAACTGTA ATATATTTCG TTGGCTATGA TCCACCATGT AGAAAATATT TCAGTTTTTC TGTCTCATAA
AAGTTCAAAT TTATTGATGC AGGTATTTGG AAAGTAGTTT TGATTTGAGG CTCTAGTCAT TACCAGCTTT ACTGTATTTG
GCAAATGGGT TCTGAAGGTC CAACAACACC CATAACAACA ATTCATGTGA CAGGATTTAA GAAATTCCAT GGAGTTGCTG
AGAATCCGAC CGAAACAATT GTCAATAATT TGGCAGAGTA CATGAATAAG AAGGGTTTGC CAAAGGGTTT AGTTATTGGG
AGCTGCAGCA TTCTTGAAAC TGCTGGTCAA GGAGCACTTG TTTCACTGTA CCAGAGATTG CAATCCGCTG TTATTTCCAA
GGACTCTGAA TCTTCAAATT CTAATAGAAC TATTTGGCTG CATTTTGGGG TTAACAGTGG TGCAACAAGG TTTGCTATAG
AGAACCAGGC AGTCAATGAG GCTAATTTTC GATGTCCGGA TGAAATGGGT TGGAAGCCCC AGAAAGTCCC CATTGTTCCT
TCGGATGGTG GAATTTCACG AACAAGGGAG ACTTCACTCC CTGTAGAGGA GATCACCAAA GCCTTGACAG AAAAGGGATA
CGAAGTTATG GTATCAGATG ATGCAGGCAG GTTCGTGTGC AATTACGTTT ACTATCACTC CCTTCGCTTT GCCGAGCGGA
ATGGAATCAA ATCCCTTTTC GTGCACGTGC CACTCTTCTT CACAATAAAT GAAGAGACTC AAATGAAATT CGCTGCTTCC
TTGTTAGAAG TTCTTGCCTC TAAATCTTAG AAGTATCATT ACATTTGGAC CCTCAAAAAT GGGTGCTCCT ATATTCGTTC
TGGTGTGAAA GTGGATGAAT GTGTATCTTG AATGAGATAC TTATAATAAA ATTATTGTAT TTAAATGGAA CCACATATGT
TTCTGAGTTA AGGTTCCCTG TACTTTGTGA AGACAATTTG ATTGATACAT CTTCAATGTT TACCTTGTGA ATAAATGTTC
A

>Vigan.04G376400.01
ATGGGTTCTG AAGGTCCAAC AACACCCATA ACAACAATTC ATGTGACAGG ATTTAAGAAA TTCCATGGAG TTGCTGAGAA
TCCGACCGAA ACAATTGTCA ATAATTTGGC AGAGTACATG AATAAGAAGG GTTTGCCAAA GGGTTTAGTT ATTGGGAGCT
GCAGCATTCT TGAAACTGCT GGTCAAGGAG CACTTGTTTC ACTGTACCAG AGATTGCAAT CCGCTGTTAT TTCCAAGGAC
TCTGAATCTT CAAATTCTAA TAGAACTATT TGGCTGCATT TTGGGGTTAA CAGTGGTGCA ACAAGGTTTG CTATAGAGAA
CCAGGCAGTC AATGAGGCTA ATTTTCGATG TCCGGATGAA ATGGGTTGGA AGCCCCAGAA AGTCCCCATT GTTCCTTCGG
ATGGTGGAAT TTCACGAACA AGGGAGACTT CACTCCCTGT AGAGGAGATC ACCAAAGCCT TGACAGAAAA GGGATACGAA
GTTATGGTAT CAGATGATGC AGGCAGGTTC GTGTGCAATT ACGTTTACTA TCACTCCCTT CGCTTTGCCG AGCGGAATGG
AATCAAATCC CTTTTCGTGC ACGTGCCACT CTTCTTCACA ATAAATGAAG AGACTCAAAT GAAATTCGCT GCTTCCTTGT
TAGAAGTTCT TGCCTCTAAA TCTTAG

>Vigan.04G376400.01
MGSEGPTTPI TTIHVTGFKK FHGVAENPTE TIVNNLAEYM NKKGLPKGLV IGSCSILETA GQGALVSLYQ RLQSAVISKD
SESSNSNRTI WLHFGVNSGA TRFAIENQAV NEANFRCPDE MGWKPQKVPI VPSDGGISRT RETSLPVEEI TKALTEKGYE
VMVSDDAGRF VCNYVYYHSL RFAERNGIKS LFVHVPLFFT INEETQMKFA ASLLEVLASK S*