GBrowse Details

Vigan.04G375700.01

Basic Information:
Name: Vigan.04G375700.01
Multiple alignment
Variant Information
Position: Chr04:49377749..49381910 (+ strand)
Length: 4162
Functional Information:
Description: Similar to Uncharacterized protein. [I1NBQ5, Glycine max]
GO: Biological Process: cellular metabolic process (GO:0044237)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: coenzyme binding (GO:0050662)
InterPro: NAD-dependent epimerase/dehydratase (IPR001509)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.47,19.30,29.63,578.52,1.48,34.33,1.04,34.50
Arabidopsis thaliana homolog: AT1G09340.1
Automatic updates:
Name: NM_001255089 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100791076 (LOC100791076), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:49377749..49378125 (+ strand)
Length: 377
Type: five_prime_UTR
Position: Chr04:49378126..49378227 (+ strand)
Length: 102
Type: CDS
Position: Chr04:49378482..49378616 (+ strand)
Length: 135
Type: CDS
Position: Chr04:49378808..49378894 (+ strand)
Length: 87
Type: CDS
Position: Chr04:49378981..49379071 (+ strand)
Length: 91
Type: CDS
Position: Chr04:49379218..49379272 (+ strand)
Length: 55
Type: CDS
Position: Chr04:49379877..49379937 (+ strand)
Length: 61
Type: CDS
Position: Chr04:49380306..49380527 (+ strand)
Length: 222
Type: CDS
Position: Chr04:49380938..49381054 (+ strand)
Length: 117
Type: CDS
Position: Chr04:49381197..49381286 (+ strand)
Length: 90
Type: CDS
Position: Chr04:49381541..49381717 (+ strand)
Length: 177
Type: CDS
Position: Chr04:49381718..49381910 (+ strand)
Length: 193
Type: three_prime_UTR

>Vigan.04G375700.01 class=Sequence position=Chr04:49377749..49381910 (+ strand)
ATGTAATTCA TCGTGTGTGT TGTTGTTCTT AGCTTGGAAT ATCGATCAGG AATTTTTCTT GCATAGGAAC AAGACATATG
TGTCTAGGTA CATTCAATTC ACATAAGAAA AGGTGAGAAG GGGTGTGGAA TTTTATCTTG TAATAAAAAA ATGGATTAAG
ATTTGATAAA TATGGTTTGA GAAAAAACGA ATGAATTTGA AAGAGTAGGG GAATGAGGGG CTGTGGATGC AGATGGAGTA
GGGTCGTTGT CTTATCATAA GCAAAGAAGA GGTGGGGAGT TAGTTGGTTG GGTGAAGGAA ACGAAAAGCA CTTCAAATTT
CAGCCCCATA TCATTACGCT ATACTTTGGA CTACACTCTA CACACACATA CCAAAGCATG GCAAGAATGG TGGCACTCCA
ACAGAACCAA CTATCTTTCT CTCCCTTGGC CTCCTCTCTT TCTGACTTCA GTGGAACCAG ACTTCATACT CAACTTCAGG
TCTCCTTTTT CTCTTTCTAC ACTGATTGCT GTGTCTGCAT TTACCAGCAG ATGCTGAACA CCGTTGTATT TTTGTGTATT
GCTTTTACTA GGTAAACTCA GTTGCACGAT TCCTGTTTTG TCCTGTTCAG TTTAATTGAG TTAACGTTTT CCACGAAGTT
TGAGTTATTA ACTTGAAGAA TCTATGCATC CAAGTGATAG ATAAAACACA TATTCTCCTC CCTAACTCCC AGCATGCTTT
GTTTTGGGTA CAGTTGAAGA GAAAATTATG GCAGCCAAAA GGGTCTTTCT CTGTCTCTGC ATCAAGCACC AAGAAAATCC
TCATCATGGG AGGCACCAGA TTTATTGGAG TATTTTTGTC TAGGCTCCTT GTCAAAGAGG GACACCAGGT ATGACTTACC
CATTTCGTGT TAACTCTGGT ACGCCTGTTT TTGTATTGAG AAATGATTTC ATTCCTCCGT GAATGCAGTT CTAAGGAATC
ATATCTTTGA AAAGCTTTTA TACCTGTGTT TGGTAATGTC GTATAGTTCG AAGTTACATT CCAAGGAATA TTTAACGATA
GAACATGTGA ATTTGGCAGG TGACTTTATT TACGAGAGGT AAAGCGCCTG TGACTCAACA ATTGCCAGGT GAATCAGACG
GTGATTATGC TGATTTTTCT TCCAAGGTAT CTAATTGCAA ATTAAATATT GAATTCACCT TCTTGCAAGG CATGATTAGC
ATTTACAATT TGTAGCATTT TTAATTTCCC AGATCTTGCA TTTGAAAGGA GACAGGAAGG ACTTTGAATT TGTAAAATCC
AGTCTGTCAG CGGAGGGGTA TGATGTTGTT TATGACATAA ATGGTATGCA AATTCCTACT TGTTCTCACC TTCTGTGAAT
ATTGTTTTCC TACAATTTCA TTATTTATTT TTCTCTTTAG GTTCAAGTCG TGAATTTTTT TAACTTTTCT CTCATGAGAG
ACTCAAATAA AATTTTCGAC ATGTTTCAGG ACGAGAGGCA GATGAAGTTG AGCCCATTCT GGATGCTCTG CCTAATCTGG
AACAGTAAGC TACCTAAGCT GTCTTTCATA TAACATAAAA GCAGATTGTC ATTGTTCAAC TTATAAATGA GTTACCTTCT
CAACTGAATT TTAAGAATAA ATTTGATTGC ACTTCAAGAG AATCATCACA GTGTTCTCTT TCATTATATG ACATTCAATA
CAGAAAATCA TTTGCAACAG GGATAATTTA TGGAGTTCTC CAACTCTTGA CTCAACAAGA TACTTCCTGA AATCTAGAAG
AAGCTATATC AACTATTTGC TTTGATATGT AGAAATAGGA ATTTACACCA ATTAGATGGC TTAGACTTTA TGTGTACAGA
TTGGGATCGA TGTAAAATTG AATTGGCTTT TTTTCCAAAA TCAAAGAGGA ATAATAGTCA ATGGTAGAAA GGGTAAGATT
AGTCAGACGG TTAGTTTTTA ATAAACTGAT TATATTAATT ATTTCATTTT AAAATGATAT AGTTTTGTAA GGTAAAATAT
AAGAAAAGTC ATAGCTTCAC AAATAATTAA ATCATAAAAA TTTAAATTGC ATACTAAGAA AATGTTTCTG GTAATAATTT
GTACTATGCC TCTAATCTCC ATTTTGCTTA TAATCTTCCC CTTGTCAGGT TTATTTACTG TTCTTCTGCT GGTGTCTATC
TCAAATCTGA CCTATTACCT CATGCAGAGG TCAGTTACGT TTTAACATGT ATATCTTCCT GTAATTTCAG AAATTTGCAG
TGACGTGCCT TTAACATTCA TATCATTTAG TTTTTTCCGA GTTATGCTGC CATTTTTTTT ATTTATTCAC AAGATTACTG
AGATGTGCTA TGAGAAAGAT TTTTCTTTCC TGTGGAGCTC TTTCGTTGCA ACCGTGTATG ATTTAAGTCA CTAAACATAA
TAGGAGTGTC ATATTTAAAG TTTCAGTTAG TTCCACTGAA GGGAAGAGTG CATGGTTCAA ATTTATTTTA TGCACACGAA
AGTACTTTAT AAAAAGTTTC TCACTTTCCA GTATTATTAA TTTCAGTTTT GTTTTAACTC CCTGCTTCCT GTGATAGACT
GATGCAGTTG ATCCTAAGAG TAGGCACAAG GGAAAGCTTG AGACAGAAAG TTTGCTACAA TCAAAGGGTG TTAATTGGAC
TTCAATAAGG CCAGTTTACA TCTATGGACC CTTGAACTAC AACCCTGTTG AAGAGTGGTT CTTCCATAGA TTGAAAGCTG
GTCGACCAAT TCCTATCCCT AGCTCAGGAA TACAAATAAC ACAACTTGGT CATGTTAAGG TATGGAATTC GTTATGTTAC
TGTTCTTAGC TGATCATATT CATTTTTCTA CAAGAGTTTT ACTATGTTCC ATGTTGCAAT TTGGTTCAAG ATACGTTATC
TGCAGTGCCT TCTTTGGATG CCTTTGAAGA TTATAATAAA TGGTCTTATG TAAATGAAAC AAACTTGTCA GTTACATCTC
AGATAGCACG AGAAGTTCAA CACACTATTA CAGACCGTCT CTAATATTAT CTTAAAACGT TCATTTAGAC CTGACTGATG
TAACTAATCT ATGGCTAAAG TTTTATATTC CCTAATAGCA TCTGATTTAA CTAATCTATA GCTAACTTTT TATACTCCTA
ATAGCATGAT ACTTTGCAAA TTTATGACAT TTTTGTGATT TTGGCTGAAA TATGGTTCAA TCATGACAGG ATTTGGCAAC
AGCTTTCGTT CAGGTTCTTG GTAATGACAA GGCCAGCAAG GAAGTATTCA ACATCTCAGG AGAGAAATAT GTCACATTTG
ATGGATTAGC AAGAGCGTGT GCTAAGGTAA GTTATTCATT CCTTGTCATT TAATCATATT TAAGGTGACC AACAGAGAGC
TGTGTAAAAA TTCTTTTATA ATGTCAAGCA TTCACATTTG AGACATATTT TACTGATATA TTTTTTGTTT GTTTTTGCCA
TTTTTCAGGC TGGTGGATTC CCAGAGCCAG AGCTCGTTCA CTACAACCCT AAAGATTTTG ATTTTGGGAA AAAGAAGTCA
TTTCCATTCC GTGACCAGGT GAAACAACAA CACATATCAG ATAGAATGAG AAAAAAGTGT CTATAACTTG TATAGTTTAT
TAAAAAAATG ACATCATTAT ATAGTCTAAT GATATTTAAA AGTTTTTTAA CTCATGATGT TTGAAAGCTG AAACATAGTT
GGGACATCCC TTTGCCGACA TAAAATTAAC AAAAGAAAAT GAATGCGTGC ACTTTTTCCA TTGGTGAAAT TATGATGAAT
AACATTGTTG TTTTATTTTC TTTATTGTGC AGCATTTCTT TGCATCGATC GAGAAAGCAA AGAGAGTACT TGGGTGGGAA
CCTGAATTTG ACCTTGTAGA AGGTCTTGCA GACTCATATA ACCTGGACTT TGGTAGAGGA ACATTCCGGA AAGAGGCTGA
TTTCTCAACA GATGACATTA TTCTTGGCAA GAGTCTTGTT AGTGTATAAA CTTTTCTATC GATTTTCGGT ATTTCATGTA
TATTTAGAAA ATCTGTTCCG ATTTGCTACA ATATGAAGTT CTGAAATATT CACGAGCCTT TCAATGTTAA TTTTGTATTA
ATTTTATTAT GCTGATGGAA AATGGATGAA AATATATATC CGTCATTATA ATTTATAAGA TTTTATGTGT GAAGTGTTAA
CG

>Vigan.04G375700.01
ATGTAATTCA TCGTGTGTGT TGTTGTTCTT AGCTTGGAAT ATCGATCAGG AATTTTTCTT GCATAGGAAC AAGACATATG
TGTCTAGGTA CATTCAATTC ACATAAGAAA AGGTGAGAAG GGGTGTGGAA TTTTATCTTG TAATAAAAAA ATGGATTAAG
ATTTGATAAA TATGGTTTGA GAAAAAACGA ATGAATTTGA AAGAGTAGGG GAATGAGGGG CTGTGGATGC AGATGGAGTA
GGGTCGTTGT CTTATCATAA GCAAAGAAGA GGTGGGGAGT TAGTTGGTTG GGTGAAGGAA ACGAAAAGCA CTTCAAATTT
CAGCCCCATA TCATTACGCT ATACTTTGGA CTACACTCTA CACACACATA CCAAAGCATG GCAAGAATGG TGGCACTCCA
ACAGAACCAA CTATCTTTCT CTCCCTTGGC CTCCTCTCTT TCTGACTTCA GTGGAACCAG ACTTCATACT CAACTTCAGT
TGAAGAGAAA ATTATGGCAG CCAAAAGGGT CTTTCTCTGT CTCTGCATCA AGCACCAAGA AAATCCTCAT CATGGGAGGC
ACCAGATTTA TTGGAGTATT TTTGTCTAGG CTCCTTGTCA AAGAGGGACA CCAGGTGACT TTATTTACGA GAGGTAAAGC
GCCTGTGACT CAACAATTGC CAGGTGAATC AGACGGTGAT TATGCTGATT TTTCTTCCAA GATCTTGCAT TTGAAAGGAG
ACAGGAAGGA CTTTGAATTT GTAAAATCCA GTCTGTCAGC GGAGGGGTAT GATGTTGTTT ATGACATAAA TGGACGAGAG
GCAGATGAAG TTGAGCCCAT TCTGGATGCT CTGCCTAATC TGGAACAGTT TATTTACTGT TCTTCTGCTG GTGTCTATCT
CAAATCTGAC CTATTACCTC ATGCAGAGAC TGATGCAGTT GATCCTAAGA GTAGGCACAA GGGAAAGCTT GAGACAGAAA
GTTTGCTACA ATCAAAGGGT GTTAATTGGA CTTCAATAAG GCCAGTTTAC ATCTATGGAC CCTTGAACTA CAACCCTGTT
GAAGAGTGGT TCTTCCATAG ATTGAAAGCT GGTCGACCAA TTCCTATCCC TAGCTCAGGA ATACAAATAA CACAACTTGG
TCATGTTAAG GATTTGGCAA CAGCTTTCGT TCAGGTTCTT GGTAATGACA AGGCCAGCAA GGAAGTATTC AACATCTCAG
GAGAGAAATA TGTCACATTT GATGGATTAG CAAGAGCGTG TGCTAAGGCT GGTGGATTCC CAGAGCCAGA GCTCGTTCAC
TACAACCCTA AAGATTTTGA TTTTGGGAAA AAGAAGTCAT TTCCATTCCG TGACCAGCAT TTCTTTGCAT CGATCGAGAA
AGCAAAGAGA GTACTTGGGT GGGAACCTGA ATTTGACCTT GTAGAAGGTC TTGCAGACTC ATATAACCTG GACTTTGGTA
GAGGAACATT CCGGAAAGAG GCTGATTTCT CAACAGATGA CATTATTCTT GGCAAGAGTC TTGTTAGTGT ATAAACTTTT
CTATCGATTT TCGGTATTTC ATGTATATTT AGAAAATCTG TTCCGATTTG CTACAATATG AAGTTCTGAA ATATTCACGA
GCCTTTCAAT GTTAATTTTG TATTAATTTT ATTATGCTGA TGGAAAATGG ATGAAAATAT ATATCCGTCA TTATAATTTA
TAAGATTTTA TGTGTGAAGT GTTAACG

>Vigan.04G375700.01
ATGGCAAGAA TGGTGGCACT CCAACAGAAC CAACTATCTT TCTCTCCCTT GGCCTCCTCT CTTTCTGACT TCAGTGGAAC
CAGACTTCAT ACTCAACTTC AGTTGAAGAG AAAATTATGG CAGCCAAAAG GGTCTTTCTC TGTCTCTGCA TCAAGCACCA
AGAAAATCCT CATCATGGGA GGCACCAGAT TTATTGGAGT ATTTTTGTCT AGGCTCCTTG TCAAAGAGGG ACACCAGGTG
ACTTTATTTA CGAGAGGTAA AGCGCCTGTG ACTCAACAAT TGCCAGGTGA ATCAGACGGT GATTATGCTG ATTTTTCTTC
CAAGATCTTG CATTTGAAAG GAGACAGGAA GGACTTTGAA TTTGTAAAAT CCAGTCTGTC AGCGGAGGGG TATGATGTTG
TTTATGACAT AAATGGACGA GAGGCAGATG AAGTTGAGCC CATTCTGGAT GCTCTGCCTA ATCTGGAACA GTTTATTTAC
TGTTCTTCTG CTGGTGTCTA TCTCAAATCT GACCTATTAC CTCATGCAGA GACTGATGCA GTTGATCCTA AGAGTAGGCA
CAAGGGAAAG CTTGAGACAG AAAGTTTGCT ACAATCAAAG GGTGTTAATT GGACTTCAAT AAGGCCAGTT TACATCTATG
GACCCTTGAA CTACAACCCT GTTGAAGAGT GGTTCTTCCA TAGATTGAAA GCTGGTCGAC CAATTCCTAT CCCTAGCTCA
GGAATACAAA TAACACAACT TGGTCATGTT AAGGATTTGG CAACAGCTTT CGTTCAGGTT CTTGGTAATG ACAAGGCCAG
CAAGGAAGTA TTCAACATCT CAGGAGAGAA ATATGTCACA TTTGATGGAT TAGCAAGAGC GTGTGCTAAG GCTGGTGGAT
TCCCAGAGCC AGAGCTCGTT CACTACAACC CTAAAGATTT TGATTTTGGG AAAAAGAAGT CATTTCCATT CCGTGACCAG
CATTTCTTTG CATCGATCGA GAAAGCAAAG AGAGTACTTG GGTGGGAACC TGAATTTGAC CTTGTAGAAG GTCTTGCAGA
CTCATATAAC CTGGACTTTG GTAGAGGAAC ATTCCGGAAA GAGGCTGATT TCTCAACAGA TGACATTATT CTTGGCAAGA
GTCTTGTTAG TGTATAA

>Vigan.04G375700.01
MARMVALQQN QLSFSPLASS LSDFSGTRLH TQLQLKRKLW QPKGSFSVSA SSTKKILIMG GTRFIGVFLS RLLVKEGHQV
TLFTRGKAPV TQQLPGESDG DYADFSSKIL HLKGDRKDFE FVKSSLSAEG YDVVYDINGR EADEVEPILD ALPNLEQFIY
CSSAGVYLKS DLLPHAETDA VDPKSRHKGK LETESLLQSK GVNWTSIRPV YIYGPLNYNP VEEWFFHRLK AGRPIPIPSS
GIQITQLGHV KDLATAFVQV LGNDKASKEV FNISGEKYVT FDGLARACAK AGGFPEPELV HYNPKDFDFG KKKSFPFRDQ
HFFASIEKAK RVLGWEPEFD LVEGLADSYN LDFGRGTFRK EADFSTDDII LGKSLVSV*