GBrowse Details

Vigan.04G373500.01

Basic Information:
Name: Vigan.04G373500.01
Multiple alignment
Variant Information
Position: Chr04:49196079..49198483 (- strand)
Length: 2405
Functional Information:
Description: Similar to GTP-binding protein SAR1A-like. [XP_004494541.1, Cicer arietinum]
GO: Biological Process: intracellular protein transport (GO:0006886)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Cellular Component: intracellular (GO:0005622)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, SAR1-type (IPR006687)
Small GTPase superfamily, ARF/SAR type (IPR006689)
Small GTPase superfamily, ARF type (IPR024156)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:81.43,32.40,58.92,57.74,63.25,101.92 ,63.02,50.65
Automatic updates:
Name: NM_001251608 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305650 (LOC100305650), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:49196079..49196444 (- strand)
Length: 366
Type: three_prime_UTR
Position: Chr04:49196445..49196765 (- strand)
Length: 321
Type: CDS
Position: Chr04:49197530..49197661 (- strand)
Length: 132
Type: CDS
Position: Chr04:49198209..49198337 (- strand)
Length: 129
Type: CDS
Position: Chr04:49198338..49198483 (- strand)
Length: 146
Type: five_prime_UTR

>Vigan.04G373500.01 class=Sequence position=Chr04:49196079..49198483 (- strand)
ATCGAATGTA ACCAACTACT TTCTCTCTCC TCTGGTTTTG GGGTTAGGTC TTTCTACTCA AAACAAAACT TCAATTTCTG
TTTCAGTTGG CGAAGATCGA TATTTATCGG TACTAGTAAT AGAGGTAATT CGTAGATAAA AAAGCAATGT TTTTGGTCGA
TTGGTTTTAT GGGATTCTAG CGTCGCTTGG GCTGTGGCAG AAGGAGGCCA AGATCTTATT CCTAGGTCTC GATAACGCTG
GCAAAACCAC CCTGCTCCAC ATGCTCAAAG ACGAGGTTCC TCTTCAATTT CATTTTTTTC CCTTTTTCAT TCCAATCGTT
ACCGATGTGT AGTGTTGTTT TTTCTTTTGA TTGGATCTTT GCCCTTATTT ACTTTTCCTA TTCCAATACT GGTTTTAATC
TTTACTGGAA AAATGATATG GGTAGTGAAA AAAGTTTATT ATGTTATTTA TGTCTTTCTG AAAGAATTTA GCGGTGTTAC
TTGGATACTC AAATCAACAT AATTTATTTG CTATTTGCTG TGGGGAGGAG GGGTCGGGGA GCTTACGACT TTTCCTTAGT
ATTGATGGAT TTGTATGTTT CCCCATGTGG AGCCTTTCCT TGTTTTAGCA AGAGAAGGTG ACATAAACTT GTTGAAGTGC
TCAGCTTCCT AACATTACCT TGCTCTCTGC ACAATTTGCT ACGGTGTTGA CATATTTTGG TCTATTGGTT TCTCTTGACA
TCGAATATTG AATGACTAAG ATGTGTGTAT TTCTCAGTCT GTAGCTTCTT GCAATTGCCA TATCTTGGTC TGATGTTTTT
ATTATGTGAA TTGGTTTTGC AGAGATTAGT CCAGCATCAG CCCACCCAGT ATCCTACGTC AGAAGAGTTG AGTATTGGAA
AGATCAAGTT CAAAGCTTTT GATCTAGGGG GTCATCAGAT TGCTCGAAGA GTGTGGAAAG ATTACTATGC TCAGGTCTCT
TTCTTTTTCC CCTCAACATA GTTTTGTTGC AAGACGGATA ATCTTCATGA GGCATGGTTT TAAACCAAGT CGAAGTAGTC
ATGTGATCCT TATAGTTAAT CTCAATTAGT GGAATAGGAA TTTATTGTTG ATGTAGTATT GGGGCGATCG TAAGCTCTGA
GATTATCTTA ATCACACATT GTGTAAACTC ATATGACTGG GTGCCGCTAA GCCTTCTCTA GATATGTGAT TTATTTTCTG
TCTTCTTTTC ATGGTTACAT GATTTGATCT TAAACAGAGC CAAACAGCAC TGTGGGATTC ATGCAAGCTA TCTCACATAA
TTAATGGCAT AAGACTTTTG TTGTTGTTAA CATGGCTACA CATGCTAATA TGTGTTGATA GTAGTTGCAG GAATAGAGCT
GCACGAGGTA TGTATGGTAG GTGAGAAATG AGGAGGAAAC TAAATGAAGT TGCTGAATTT TCTGAAAGAT TAATATGTAT
TTCATTATAT GATTACTTCT GAACCAAAGA ATTTATATCT TCCTATTTTA TATTGTTTGT TACTTTATTT GATTCATGTG
TAGTGGCAGA AATGACGGTA ATAGCTTGCT GATGGCGCAC TTTAGAGGAT GTGCTAATCA TACATATCTG CTTCCGAAGC
TATATCTTAT TTGGTGTTGT GACATTTTTT TAACTAGGAC CCATTTTTTC TTGCCCCGGA TATTTTATTG TTTATTTATC
TTGTGACGAT GATCAAGTTG CATCCTTCTT TGATACAGGT AGATGCAGTG GTGTACTTGG TTGATGCGTA TGACAAGGAA
AGATTTGCTG AGTCAAAAAA AGAGCTGGAT GCTCTACTCT CTGATGAATC TTTAGCCAAT GTCCCTTTCC TTGTCCTTGG
GAACAAAATT GATATTCCAT ATGCTGCCTC AGAAGAAGAG CTGCGTTACC ATTTGGGCCT GACTAACTTC ACCACAGGCA
AAGGTAAGGT AAATTTGGCC GACTCAAATG TCCGTGCCAT GGAGGTGTTC ATGTGCAGTA TTGTGAAGAA AATGGGTTAT
GGGGAAGGTT TCAAATGGCT TTCTCAGTAC ATCAAATAGT CCATGACCAA GAGATAGTCT GGTATCTCAT TTCTAGAAGT
TTGTTTCTGT AGTTATGATT TGGAGGTGTT GATGGTACGA AATTGCAGTA TATTTCAATT TTATTTAAAT ATAAAATGAC
TGAACCTATT TCTCACTTCC TTTCTCCGTT GTGTGCTGAT AAAATTTCAG ATAATCTGTG GTGAATGATG AATTTGGTCC
ATGATTTTTA CACCCGCTTA TTCGTCTTTC CACTTTACTT TTGTAATTCC TATTCTACTC CTCTCTTACT GTCTCTTCAG
ACAGAATTAG GTATATTTGC GAAGGCCCGT AGGCAGCCCG TTTAGCCCAC ATGGGTCTCT AGATGGAATC AACTTTTTCA
CACCC

>Vigan.04G373500.01
ATCGAATGTA ACCAACTACT TTCTCTCTCC TCTGGTTTTG GGGTTAGGTC TTTCTACTCA AAACAAAACT TCAATTTCTG
TTTCAGTTGG CGAAGATCGA TATTTATCGG TACTAGTAAT AGAGGTAATT CGTAGATAAA AAAGCAATGT TTTTGGTCGA
TTGGTTTTAT GGGATTCTAG CGTCGCTTGG GCTGTGGCAG AAGGAGGCCA AGATCTTATT CCTAGGTCTC GATAACGCTG
GCAAAACCAC CCTGCTCCAC ATGCTCAAAG ACGAGAGATT AGTCCAGCAT CAGCCCACCC AGTATCCTAC GTCAGAAGAG
TTGAGTATTG GAAAGATCAA GTTCAAAGCT TTTGATCTAG GGGGTCATCA GATTGCTCGA AGAGTGTGGA AAGATTACTA
TGCTCAGGTA GATGCAGTGG TGTACTTGGT TGATGCGTAT GACAAGGAAA GATTTGCTGA GTCAAAAAAA GAGCTGGATG
CTCTACTCTC TGATGAATCT TTAGCCAATG TCCCTTTCCT TGTCCTTGGG AACAAAATTG ATATTCCATA TGCTGCCTCA
GAAGAAGAGC TGCGTTACCA TTTGGGCCTG ACTAACTTCA CCACAGGCAA AGGTAAGGTA AATTTGGCCG ACTCAAATGT
CCGTGCCATG GAGGTGTTCA TGTGCAGTAT TGTGAAGAAA ATGGGTTATG GGGAAGGTTT CAAATGGCTT TCTCAGTACA
TCAAATAGTC CATGACCAAG AGATAGTCTG GTATCTCATT TCTAGAAGTT TGTTTCTGTA GTTATGATTT GGAGGTGTTG
ATGGTACGAA ATTGCAGTAT ATTTCAATTT TATTTAAATA TAAAATGACT GAACCTATTT CTCACTTCCT TTCTCCGTTG
TGTGCTGATA AAATTTCAGA TAATCTGTGG TGAATGATGA ATTTGGTCCA TGATTTTTAC ACCCGCTTAT TCGTCTTTCC
ACTTTACTTT TGTAATTCCT ATTCTACTCC TCTCTTACTG TCTCTTCAGA CAGAATTAGG TATATTTGCG AAGGCCCGTA
GGCAGCCCGT TTAGCCCACA TGGGTCTCTA GATGGAATCA ACTTTTTCAC ACCC

>Vigan.04G373500.01
ATGTTTTTGG TCGATTGGTT TTATGGGATT CTAGCGTCGC TTGGGCTGTG GCAGAAGGAG GCCAAGATCT TATTCCTAGG
TCTCGATAAC GCTGGCAAAA CCACCCTGCT CCACATGCTC AAAGACGAGA GATTAGTCCA GCATCAGCCC ACCCAGTATC
CTACGTCAGA AGAGTTGAGT ATTGGAAAGA TCAAGTTCAA AGCTTTTGAT CTAGGGGGTC ATCAGATTGC TCGAAGAGTG
TGGAAAGATT ACTATGCTCA GGTAGATGCA GTGGTGTACT TGGTTGATGC GTATGACAAG GAAAGATTTG CTGAGTCAAA
AAAAGAGCTG GATGCTCTAC TCTCTGATGA ATCTTTAGCC AATGTCCCTT TCCTTGTCCT TGGGAACAAA ATTGATATTC
CATATGCTGC CTCAGAAGAA GAGCTGCGTT ACCATTTGGG CCTGACTAAC TTCACCACAG GCAAAGGTAA GGTAAATTTG
GCCGACTCAA ATGTCCGTGC CATGGAGGTG TTCATGTGCA GTATTGTGAA GAAAATGGGT TATGGGGAAG GTTTCAAATG
GCTTTCTCAG TACATCAAAT AG

>Vigan.04G373500.01
MFLVDWFYGI LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQYPTSEELS IGKIKFKAFD LGGHQIARRV
WKDYYAQVDA VVYLVDAYDK ERFAESKKEL DALLSDESLA NVPFLVLGNK IDIPYAASEE ELRYHLGLTN FTTGKGKVNL
ADSNVRAMEV FMCSIVKKMG YGEGFKWLSQ YIK*