GBrowse Details

Vigan.04G355800.01

Basic Information:
Name: Vigan.04G355800.01
Multiple alignment
Variant Information
Position: Chr04:47691962..47696763 (+ strand)
Length: 4802
Functional Information:
Description: Similar to Uncharacterized protein. [I1MZ51, Glycine max]
InterPro: Leucine-rich repeat, cysteine-containing subtype (IPR006553)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:22.36,8.42,10.67,27.80,22.13,18.04,29.21,11.11
Arabidopsis thaliana homolog: AT2G39940.1
Automatic updates:
Name: NM_001251661 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max coronatine-insensitive 1 (COI1), mRNA.
PubMed ID: 16478048 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:47691962..47692250 (+ strand)
Length: 289
Type: five_prime_UTR
Position: Chr04:47692251..47692729 (+ strand)
Length: 479
Type: CDS
Position: Chr04:47694286..47694757 (+ strand)
Length: 472
Type: CDS
Position: Chr04:47695726..47696544 (+ strand)
Length: 819
Type: CDS
Position: Chr04:47696545..47696763 (+ strand)
Length: 219
Type: three_prime_UTR

>Vigan.04G355800.01 class=Sequence position=Chr04:47691962..47696763 (+ strand)
CACAGGCAAC TCACGGTTAC CGGAAACTGT GTTCCTCGTC CTGGGATGAA AATATCAAAC ATTGTTATAA CAGAAAGGCC
TTCGAAGTAG TGACGTGTTA CATCACATCA CGTAAATATA GGTAATAAGC TCACAGCAAG TTTTCTCCTT TCACCCATTC
GATTCCTATT GGCCCTACCA TTTTCTCTCT CTCTCTCTCT TACACACACT CTCTCTCGTC ATCTCTCTTT CTGCCCTGCA
TCTTTCTTTT CTTCTCTTCA CTCCTCAGGT TCCGATCCAA TAGCAAACCA TGACGGAGGA GCGGAACGTG CGAAAAACAC
GTGTGGTCGA CGTGGTTCTT GACTGCGTCA TACCTTACAT CGATGACCCT AAGGACCGGG ACGCCGTTTC CCAGGTGTGT
CGACGTTGGT ACGAGCTCGA CTCCCTTACC CGGAAGCACG TCACCATCGC CCTCTGCTAC ACCACCACGC CGGCGCGTCT
CCGCCGTCGC TTTCCGCACC TGGAGTCCCT TAAACTGAAG GGGAAGCCCC GCGCCGCAAT GTTCAACCTG ATTCCCGAGG
ATTGGGGAGG CCACGTCACC CCCTGGGTTG AGGAAATCTC TCAGTACTTC GATTGCCTGA AGAGCCTCCA CTTCCGCCGC
ATGATTGTCA CCGATTCCGA TCTTCAGCTC CTCGCTCGCT CCCGAGGTCA CGTGCTGCAA GCTCTCAAGC TTGACAAGTG
CTCCGGTTTC TCCACCGATG GACTTCTCCA TATTGGTCGC CTTTGCAAGT AATTACCTTA ATTCCTTTTA TTATTACTAC
TATTACTTCT GTTAGTTTGT TTTCTTTCCA AATTAAGCAT CCTGTTATAA AAATTAATGA CCAAAATATG ATTTTCTCTT
GTTCATCATG GAGTTACTAA ACTGTGGAGA CAGAACTTTT TAAATTTCTC TGCGAATTGT TTCGTAACTT CAGTTTTAGT
AACTAATTGG TTTGTTTGCT CGAAAGGGGA TAATTTATGA CGGATTTTTG AAAAGTTATG TATCGATAAA GGGGTTTAAC
AGTGACTAGC TTAGTTGCCC TAACTGTTGT TGTGTTTAAA ATAATTTAAT TTTCTTTCAA AATTAACTAT CCCTTTTTTC
TCTCTCCATG CACCGAAAAA TAGCATTGCT TTGGCAGGTT CATGTCAAAT TCATTGGCTT AATACCAAAC ATAGCGATGA
AAAATGGAGT AATTAAGTTT CTTTGACTTG AAATTTGCAT ATATAATGTT CCGCTACTGA TGTTTTGTTG AAGTGGTTTA
GCAGTTTGAG TTCCTTTTCT TTGAATATGT TCAGTTGGGT GTTATTCTTC GTTGAGGAGT TGGATTCTTT GACCTAAGAT
TCGTCTGTAG TTGGTGCTTT TTATTTACTC GATTTACGTG ATGATGGCTG TTTAGTTACT ATTCACAGAG CCCTGAATGG
CTAACCAGTA ACGCCAAGTG TTATTACTTG TTTCGCTAAT CCTCCCTGCT TTTATTGCTA TGTATCCATT CCAGTTGTCT
GGCAAAGGAA GCTTTGTTTT AATGGCATTG GGTAATAAAT TGTTGTGTCA CAATATCAGT TACTGTAAGT TACTGTTAAC
CATTGAGGAT TCCTAAATTT ATGAGCAACA TACCCATTAT ATAAGTATAT GAGCTGAAAA AGTGGAGAGG TAAAAAGAAA
AAAAAATGAA GGATTTTAGG GAAAATGATA CGATGTGAAG AAAAATATTT AGGAAAGAAA TTGAATGAAA GATAAGATGG
AAGAAAACGT AGGAATATGT TAGCTATAAA TTCATTATTT ATTGGTGTAT CCTGGGGAAG AGGTAGCTGG TTTAATTTCG
GTTTTGTTCC AATGTCGGTT ACTAGTTTTT TTATTTTTTC CAACAGTTCT TCAAATGATT AAATGGGTTG AATTTCGTTC
TCCTGAATTT GGAATCTTCG AATTGAGTGT ATTTTTTCTG GTGATTTAGT CATTTATGGA GTAGGTTATG AGGATGGCGA
TCAGTTTCTG TAACTTGTAG GATGAAGATA CAAGTCTTCT TCTCACAGTA TATGCGTTCT TTTTTTAAAC TGAAGTATTG
GCATTCTTAT ACTTTATGCT TCATTTGAGG GAGAAAGAAT CTTATAACTT TTTCAGTTTT CATTTTATTT TCTTAGAATA
AAAATTACAT GATAACAGAC ATCTTGGTTT TGGGGAATAA ATTCTAGGAA TATTAGAATT TAGAAATACA TTGGTACGAT
GTACCATCTT GTTTATTGGA AGCTAAAACT TACTTGCAGC TAATTAAATT TTTGTGGCTC TGACTGTAAA TTTTTCTTTG
GCAGGAATTT GAGAGTGCTG TTTCTGGAGG AAAGTTCTAT AATTGAGAAG GACGGAGAAT GGCTACACGA ACTTGCTTTG
AATAATACAG TTCTTGAGGA TCTGAATTTT TACTTGACAG ACATTGCTTG TATAAGGAAT CAGGACCTTG AACTCCTGGC
TAGAAATTGC CCCAACCTAG TGTCTGTGAA ACTTACTGAT TGTGAAATAC TTGATCTTGT GAACTTCTTT AAGCATGCGT
CTGCTCTGGA AGAGTTTTGT GGAGGCACCT ACAACGCGGA ACCAGAAAAT TACTCTGCTA TATCATTGCC AGCAAAGTTA
TGTCGATTGG GTTTAACGTA TATTGGAAAG AATGAGTTGC CCATAGTGTT CTTATTTGCA GGCGTACTAA AAAAATTGGA
TCTCCTCTAT GCAATGCTGG ACACAGAGGA TCATTGTACC TTAATCCGAA AGTGTCCAAA TCTGGAAGTC CTTGAGGTAA
GTTCCCCAAT GTCAAGGATT TCAAATTAAC CGCTCTACGT CTTTACTCAA TACGTTTTTA CTCCTATACA AGCGGATTTT
TATTTTGTTT CTTATAAATA AATATATATA TATATATATA TATATATATA TATTTTCATC TTTTTTGTAA ATTTTTCCTT
TCTTTCTAAT TTCCCCTCCT ATTCAAAATT ATTAGTGTTT ACAGTTTATT TTAGAATAGA TAGATACTAT ATATTTCATA
ATTTTGAAAA TTTTCTTGAA GACATTCTAT AATGAAATTA TGTCACAATA CCAATAGTCA TTACTTGAAA TAATCAATTG
ACATGGTTCA ACACAAACGT ATATGGGTGC CAGATAATTT AAGGAATGAT TTTAAATTTT AGAGAGACTA CAACTAAAAT
TAAAATACAC TCATGTTATA AAAACTAGAA CATATTTAAA CCTCGTGTGT GTGTATCTAA GGTTTTATGT AAGGGTTTGA
TAATATACTT TCATTTGTCT TTTGAAGGAA ACATGTTAAC CAGTTATAAC ACTGAATTTG TTAAAATACT CCTGCATGAA
AATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TAAACACTCA AGCAATTGTC
CAAATATGTA ATCATTATTA ATTTCACATT ATATAATGAT ACCAGCCCCA AAATACCTTT CCGTTAATTG TGATTTTGTT
TCTGAAGACC CCTTTTTTCA TTCATAGTTC TAAATTCCTA GGAATGATAA TATATGAAAA AACTTTGCTT TAAAATTGAA
ATTAGTAAAA ATTAAATGAT ATGAACTTCC TTTTTTTAAT ACAGTGATTA TTATATATTT TTTTTATATA TTTGAGTATG
GAGGAGTACA TATATGTCAA TAATTTTGAA TTTAGCAGAA CTACATTTGA AACGTTTATG GTTGATACCT TTCTTTATGG
ACAGACGAGG AATGTAATTG GCGATAGAGG GTTAGAAGTT CTTGGTCGTT GTTGTAGGAG GCTAAAAAGG CTTAGGATTG
AAAGGGGTGA TGATGATCAA GGAATGGAGG ATGAAGAAGG TACTGTGTCT CATAGAGGGC TAATAGCCTT GTCACAGGGC
TGTTCAGAGC TTGAATACAT GGCTGTTTAC GTGTCCGATA TTACAAATGC ATCTCTGGAA CATATTGGAA GTCACTTAAA
AAAGCTATGC GATTTTCGCC TAGTGTTACT TGATCATGAA AAGAAAATAA CTGACTTGCC ACTTGACAAC GGAGTGAGGG
CTCTTCTGAG GGGCTGTGAG AAGCTGAGAA GATTTGCTCT ATATCTGAGG CGGGGGGGTT TGACTGATGT AGGTCTTGGT
TACATAGGAC AGTACAGTTC AAATGTTCGA TGGATGCTGC TCGGGTATGT GGGAGAGTCT GATGCAGGGC TTTTGGAATT
CTCAAAGGGG TGTCCTAGTC TTCAGAAACT TGAAATGAGA GGGTGTTCTT TTTTCAGTGA GCGAGCACTT GCTGTTGCTG
CAACGCGATT AACTTCTCTA AGGTACTTGT GGGTTCAAGG GTATGGAGCA TCTCCATCTG GGCATGACCT TTTGGCAATG
GCTCGCCCAT TTTGGAACAT TGAGCTGATT CCTTCTAGAA AGGTGCCTAA CCATCAGGAT GAGACTCTAG TTGTTGAGCA
TCCAGCTCAT ATTCTTGCCT ATTATTCTCT TGCAGGGCAG AGATCAGATT TTCCAGATAC TGTTGTGCCT TTGGACACTG
CCACGCGTCG TGTTGACGCC TAGAGTTCTG TATATACCTT TTTTTTTCTT TTCTTTTTCT TCTTCTCTAC TTTCATATTT
GGCTTCTATC TATGTTCCTG CCCTATTTCT AGTTCATTTT AGACCATTAC TCCTGTAATA AGCCTGTTTT CATTCAGAAA
CGCTTCCCCT AACGAAATTG GTTCCCTTTA TAACTGAAGT TCTCAATTTT GTGAATAAAA GCCAGAGTAG TTTTTTTTTT
CT

>Vigan.04G355800.01
CACAGGCAAC TCACGGTTAC CGGAAACTGT GTTCCTCGTC CTGGGATGAA AATATCAAAC ATTGTTATAA CAGAAAGGCC
TTCGAAGTAG TGACGTGTTA CATCACATCA CGTAAATATA GGTAATAAGC TCACAGCAAG TTTTCTCCTT TCACCCATTC
GATTCCTATT GGCCCTACCA TTTTCTCTCT CTCTCTCTCT TACACACACT CTCTCTCGTC ATCTCTCTTT CTGCCCTGCA
TCTTTCTTTT CTTCTCTTCA CTCCTCAGGT TCCGATCCAA TAGCAAACCA TGACGGAGGA GCGGAACGTG CGAAAAACAC
GTGTGGTCGA CGTGGTTCTT GACTGCGTCA TACCTTACAT CGATGACCCT AAGGACCGGG ACGCCGTTTC CCAGGTGTGT
CGACGTTGGT ACGAGCTCGA CTCCCTTACC CGGAAGCACG TCACCATCGC CCTCTGCTAC ACCACCACGC CGGCGCGTCT
CCGCCGTCGC TTTCCGCACC TGGAGTCCCT TAAACTGAAG GGGAAGCCCC GCGCCGCAAT GTTCAACCTG ATTCCCGAGG
ATTGGGGAGG CCACGTCACC CCCTGGGTTG AGGAAATCTC TCAGTACTTC GATTGCCTGA AGAGCCTCCA CTTCCGCCGC
ATGATTGTCA CCGATTCCGA TCTTCAGCTC CTCGCTCGCT CCCGAGGTCA CGTGCTGCAA GCTCTCAAGC TTGACAAGTG
CTCCGGTTTC TCCACCGATG GACTTCTCCA TATTGGTCGC CTTTGCAAGA ATTTGAGAGT GCTGTTTCTG GAGGAAAGTT
CTATAATTGA GAAGGACGGA GAATGGCTAC ACGAACTTGC TTTGAATAAT ACAGTTCTTG AGGATCTGAA TTTTTACTTG
ACAGACATTG CTTGTATAAG GAATCAGGAC CTTGAACTCC TGGCTAGAAA TTGCCCCAAC CTAGTGTCTG TGAAACTTAC
TGATTGTGAA ATACTTGATC TTGTGAACTT CTTTAAGCAT GCGTCTGCTC TGGAAGAGTT TTGTGGAGGC ACCTACAACG
CGGAACCAGA AAATTACTCT GCTATATCAT TGCCAGCAAA GTTATGTCGA TTGGGTTTAA CGTATATTGG AAAGAATGAG
TTGCCCATAG TGTTCTTATT TGCAGGCGTA CTAAAAAAAT TGGATCTCCT CTATGCAATG CTGGACACAG AGGATCATTG
TACCTTAATC CGAAAGTGTC CAAATCTGGA AGTCCTTGAG ACGAGGAATG TAATTGGCGA TAGAGGGTTA GAAGTTCTTG
GTCGTTGTTG TAGGAGGCTA AAAAGGCTTA GGATTGAAAG GGGTGATGAT GATCAAGGAA TGGAGGATGA AGAAGGTACT
GTGTCTCATA GAGGGCTAAT AGCCTTGTCA CAGGGCTGTT CAGAGCTTGA ATACATGGCT GTTTACGTGT CCGATATTAC
AAATGCATCT CTGGAACATA TTGGAAGTCA CTTAAAAAAG CTATGCGATT TTCGCCTAGT GTTACTTGAT CATGAAAAGA
AAATAACTGA CTTGCCACTT GACAACGGAG TGAGGGCTCT TCTGAGGGGC TGTGAGAAGC TGAGAAGATT TGCTCTATAT
CTGAGGCGGG GGGGTTTGAC TGATGTAGGT CTTGGTTACA TAGGACAGTA CAGTTCAAAT GTTCGATGGA TGCTGCTCGG
GTATGTGGGA GAGTCTGATG CAGGGCTTTT GGAATTCTCA AAGGGGTGTC CTAGTCTTCA GAAACTTGAA ATGAGAGGGT
GTTCTTTTTT CAGTGAGCGA GCACTTGCTG TTGCTGCAAC GCGATTAACT TCTCTAAGGT ACTTGTGGGT TCAAGGGTAT
GGAGCATCTC CATCTGGGCA TGACCTTTTG GCAATGGCTC GCCCATTTTG GAACATTGAG CTGATTCCTT CTAGAAAGGT
GCCTAACCAT CAGGATGAGA CTCTAGTTGT TGAGCATCCA GCTCATATTC TTGCCTATTA TTCTCTTGCA GGGCAGAGAT
CAGATTTTCC AGATACTGTT GTGCCTTTGG ACACTGCCAC GCGTCGTGTT GACGCCTAGA GTTCTGTATA TACCTTTTTT
TTTCTTTTCT TTTTCTTCTT CTCTACTTTC ATATTTGGCT TCTATCTATG TTCCTGCCCT ATTTCTAGTT CATTTTAGAC
CATTACTCCT GTAATAAGCC TGTTTTCATT CAGAAACGCT TCCCCTAACG AAATTGGTTC CCTTTATAAC TGAAGTTCTC
AATTTTGTGA ATAAAAGCCA GAGTAGTTTT TTTTTTCT

>Vigan.04G355800.01
ATGACGGAGG AGCGGAACGT GCGAAAAACA CGTGTGGTCG ACGTGGTTCT TGACTGCGTC ATACCTTACA TCGATGACCC
TAAGGACCGG GACGCCGTTT CCCAGGTGTG TCGACGTTGG TACGAGCTCG ACTCCCTTAC CCGGAAGCAC GTCACCATCG
CCCTCTGCTA CACCACCACG CCGGCGCGTC TCCGCCGTCG CTTTCCGCAC CTGGAGTCCC TTAAACTGAA GGGGAAGCCC
CGCGCCGCAA TGTTCAACCT GATTCCCGAG GATTGGGGAG GCCACGTCAC CCCCTGGGTT GAGGAAATCT CTCAGTACTT
CGATTGCCTG AAGAGCCTCC ACTTCCGCCG CATGATTGTC ACCGATTCCG ATCTTCAGCT CCTCGCTCGC TCCCGAGGTC
ACGTGCTGCA AGCTCTCAAG CTTGACAAGT GCTCCGGTTT CTCCACCGAT GGACTTCTCC ATATTGGTCG CCTTTGCAAG
AATTTGAGAG TGCTGTTTCT GGAGGAAAGT TCTATAATTG AGAAGGACGG AGAATGGCTA CACGAACTTG CTTTGAATAA
TACAGTTCTT GAGGATCTGA ATTTTTACTT GACAGACATT GCTTGTATAA GGAATCAGGA CCTTGAACTC CTGGCTAGAA
ATTGCCCCAA CCTAGTGTCT GTGAAACTTA CTGATTGTGA AATACTTGAT CTTGTGAACT TCTTTAAGCA TGCGTCTGCT
CTGGAAGAGT TTTGTGGAGG CACCTACAAC GCGGAACCAG AAAATTACTC TGCTATATCA TTGCCAGCAA AGTTATGTCG
ATTGGGTTTA ACGTATATTG GAAAGAATGA GTTGCCCATA GTGTTCTTAT TTGCAGGCGT ACTAAAAAAA TTGGATCTCC
TCTATGCAAT GCTGGACACA GAGGATCATT GTACCTTAAT CCGAAAGTGT CCAAATCTGG AAGTCCTTGA GACGAGGAAT
GTAATTGGCG ATAGAGGGTT AGAAGTTCTT GGTCGTTGTT GTAGGAGGCT AAAAAGGCTT AGGATTGAAA GGGGTGATGA
TGATCAAGGA ATGGAGGATG AAGAAGGTAC TGTGTCTCAT AGAGGGCTAA TAGCCTTGTC ACAGGGCTGT TCAGAGCTTG
AATACATGGC TGTTTACGTG TCCGATATTA CAAATGCATC TCTGGAACAT ATTGGAAGTC ACTTAAAAAA GCTATGCGAT
TTTCGCCTAG TGTTACTTGA TCATGAAAAG AAAATAACTG ACTTGCCACT TGACAACGGA GTGAGGGCTC TTCTGAGGGG
CTGTGAGAAG CTGAGAAGAT TTGCTCTATA TCTGAGGCGG GGGGGTTTGA CTGATGTAGG TCTTGGTTAC ATAGGACAGT
ACAGTTCAAA TGTTCGATGG ATGCTGCTCG GGTATGTGGG AGAGTCTGAT GCAGGGCTTT TGGAATTCTC AAAGGGGTGT
CCTAGTCTTC AGAAACTTGA AATGAGAGGG TGTTCTTTTT TCAGTGAGCG AGCACTTGCT GTTGCTGCAA CGCGATTAAC
TTCTCTAAGG TACTTGTGGG TTCAAGGGTA TGGAGCATCT CCATCTGGGC ATGACCTTTT GGCAATGGCT CGCCCATTTT
GGAACATTGA GCTGATTCCT TCTAGAAAGG TGCCTAACCA TCAGGATGAG ACTCTAGTTG TTGAGCATCC AGCTCATATT
CTTGCCTATT ATTCTCTTGC AGGGCAGAGA TCAGATTTTC CAGATACTGT TGTGCCTTTG GACACTGCCA CGCGTCGTGT
TGACGCCTAG 

>Vigan.04G355800.01
MTEERNVRKT RVVDVVLDCV IPYIDDPKDR DAVSQVCRRW YELDSLTRKH VTIALCYTTT PARLRRRFPH LESLKLKGKP
RAAMFNLIPE DWGGHVTPWV EEISQYFDCL KSLHFRRMIV TDSDLQLLAR SRGHVLQALK LDKCSGFSTD GLLHIGRLCK
NLRVLFLEES SIIEKDGEWL HELALNNTVL EDLNFYLTDI ACIRNQDLEL LARNCPNLVS VKLTDCEILD LVNFFKHASA
LEEFCGGTYN AEPENYSAIS LPAKLCRLGL TYIGKNELPI VFLFAGVLKK LDLLYAMLDT EDHCTLIRKC PNLEVLETRN
VIGDRGLEVL GRCCRRLKRL RIERGDDDQG MEDEEGTVSH RGLIALSQGC SELEYMAVYV SDITNASLEH IGSHLKKLCD
FRLVLLDHEK KITDLPLDNG VRALLRGCEK LRRFALYLRR GGLTDVGLGY IGQYSSNVRW MLLGYVGESD AGLLEFSKGC
PSLQKLEMRG CSFFSERALA VAATRLTSLR YLWVQGYGAS PSGHDLLAMA RPFWNIELIP SRKVPNHQDE TLVVEHPAHI
LAYYSLAGQR SDFPDTVVPL DTATRRVDA*