GBrowse Details

Vigan.04G350600.01

Basic Information:
Name: Vigan.04G350600.01
Multiple alignment
Variant Information
Position: Chr04:47191566..47195609 (- strand)
Length: 4044
Functional Information:
Description: Similar to Ubiquitin-conjugating enzyme E2 variant 1C. [Q9SJ44, Arabidopsis thaliana]
GO: Molecular Function: acid-amino acid ligase activity (GO:0016881)
InterPro: Ubiquitin-conjugating enzyme, E2 (IPR000608)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:41.36,23.27,52.85,46.02,47.43,60.54,50.96,35.22
Arabidopsis thaliana homolog: AT2G36060.2
Automatic updates:
Name: NM_001249004 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ubiquitin-protein ligase (LOC100306398), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254667 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ubiquitin-conjugating enzyme E2 variant 1C-like (LOC100789495), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:47191566..47191925 (- strand)
Length: 360
Type: three_prime_UTR
Position: Chr04:47191926..47192066 (- strand)
Length: 141
Type: CDS
Position: Chr04:47193123..47193248 (- strand)
Length: 126
Type: CDS
Position: Chr04:47193916..47194055 (- strand)
Length: 140
Type: CDS
Position: Chr04:47195428..47195461 (- strand)
Length: 34
Type: CDS
Position: Chr04:47195462..47195609 (- strand)
Length: 148
Type: five_prime_UTR

>Vigan.04G350600.01 class=Sequence position=Chr04:47191566..47195609 (- strand)
CCCTATTAGA CCAAATCGCT GTTGTAACCG TTTCTTTTTC TTTCTTCATT ATTATTCCGA AATTTGCCTT CGATTTTTTG
CTTACGCAGA TTCCCCTTTC CGTCAGACAT TTCCATACTT TGATCAGATC CACGACAATT GCTCATCCAT GACGCTTGGC
TCTGCGGGAT CCAGTGTCGT GGGTTAGTTC TAATAAATCA TCTTTCTCTT CTTTTTTTCT TTTTCGTTTT CTTCAAAACT
GAAATTTAAT TTCAGGAATA CGCATGCTTT CTGTTAGTTT CTTGTTGCCT TGACTTGTCG CCCTTGATGA ATTTGAAAAT
TGCTTGTCTG TTTCATTTTT ATTGTGGTTA AAGTTTTGTT GATGGAAACA AGGTGGGGGT TTTAATCCAT AACGCTGTTT
GTGATGGGGA ATTTTGTGTA AATATTGTTT TTTTTTTTTG GATACCCTAA TTATAATTTG AACCAATCTG TCTTGTTATC
TCTCGTGTTT ATCATTGTAC GCTTCTTTTG AAATTCATAT CTCATTTGTA CTGCTTTCTT TATAAGAAAG CCCAGGTGAG
TTGGCTTAAT AGTCACTGTT TGACATATTT TCCCCCTTTT CTGTTTAGTC AGTCCTCTGT TATTTCACAA TGAATTGAAG
CATGTTCACG GTAACTACAT GACACACATT TGTATATCTT AACATGAAAG AAGAAAGACT GTTTTTTATA ATTTAGGTTT
AATATAAATT CTAACATTCA AAGACTTGAT TTTAGCTTTT GAAATGTAGG CTAGGACCTT TTATATCATT TCTCTTAGGA
AAATTGAGTA ATAATTACCA GATTCCTAAG GATAATTTCC TACAATGCAA CTTACTTGAA ACCATTCTCA AAATGCATTT
TTTGATACTT ACTCCCAACT CGATTCCATT AGTAATCTCA GAGACTTACA AATATGACAA TTCAACTCTT TAAATAGTAT
AAAAAATCAG ACATAACAAA TTCCTTGTAA ATACAAACCA CAAAATTAGA TAAATTATCT TACATTTGTG AAGTTATAAG
CCAATTATTA GTTATATTTT TTTTCCTGCT CCTGAATGAA CATGCCCTGT GAACAAAGAA ATGTGTCATG CTATCAGCTG
GATGAAGAAA TATGGAACAT TTTCTCTGGC TCTGATCCTT GTGTTCATGA CTATAAAGTA GTGCGTTATG AGCCTACAAT
TGATATGGGG AAAAAGAAAA TAAATATTTT ATTAATTGAA TAAATTAGGC AGAACTATAG AGAGAAATCT CTCCTTTAAG
GGTCTCCGAT TCCACACAAA GTTAATGCTA ATGTTTACAT TTGATACCTA ACAAAATGAT CCTCGTCCCT TACATTCTCA
TATTTATATA TAATTAAACC CTTTAACTAA TTAACCACTC TAACGATTGC TAAATGTTTT TTCACTCGCT CCTAGCTCAA
AACATCGTGA CTAGTATTTG GTGAAAGGAT AACATATATA ACTATATTTT ACATTTATTG AATATACAAT ACCAATATGA
GTGTAGTGTT AAAGGGGTTT ACACCTTAAT GTAGTTCCGA GGAACTTCAG ATTGCTGGAG GAACTTGAAA AGGGAGAAAA
AGGAATTGGA GATGGCACAG TTAGCTATGG AATGGATGAT GGTGATGATA TTTACATGCG CTCTTGGACT GGCACCATTA
TTGGCCCCTA TAATGTAAAT ATTTATCTAT CAGCACCTTG GTTTTTTATT TTTTAACAAA TATGTGTTAG TTTTTTAATG
AGCTAAATTC TATTTGGACT TGTGAATTTT CATATAGCAA TTGATTTAAC TTTATAACAA CCATTTCAAT AGTGGAAGTA
ATCCACTCTA AGATGAACGT TTCACTTTTC GGGTGATACA AATTGACCAT TTAAATACAT TTTTTTGTCT TAATATGTGT
ATACTACTAG TATAATGTTC ACGTTCATGT CCAAACAGTC CAATTTTAAG AATTAAGTTA TATAACAGTA CGAAGTTCCA
TATATTTTTA CATATGTACT TTATCATTAT ACTACTTTAC TGGGAATAAT ATCAACAACT TTTAAAATTA ATTTTGAAAA
TGTTATTATG CTTCTGAAAT TTATCTGATG ATTTTAATGG GAACGTTTTT GGTTTTCTAT TATGATCTTC TAATAGTCTA
CTGAATCTTT ATTTGACTTG ATTAAAGTAG CTTCTTAGCT AATTTTAAAA AAAATCTGAA GTATGAATCG TTCTATCCTT
AAACCAGAGA ATTGAGTCAT ATTATCATTT TTCCAAATAA TGTAATTTTT TTTTATTTAC TGTCTAATAT AATGGACTAT
TTTTTGGTTC AGTAATTGTG TTTTTTCTGT TTTTCTGCCA GACTGTACAC GAAGGAAGAA TTTATCAATT GAAGTTGTTT
TGTGATAAAG ATTACCCAGA AAAGCCTCCA ACTGTTCGGT TTCATTCACG GATCAATATG ACTTGTGTTA ATCATGAAAC
TGGAGTGGTA CAATTCATAG TTTTTCACAT GCTGTTTTTT ACATATTTTA ATGCAATAGG TATTGGTGTG GGAGAGAGGG
AGTGTACACA ATGCTAACTA AAGTATTTTT TGCTTTGATT TGTTAATTGG TGTTGGGAAT AAATATGACA CGTACGTTAG
AGAAATGTAC TCAAGAGTGT GTCAAAGACC TGACACTGAT TATCATGTTG CCAAAATAAT GAAAATAAGT TATGCTAACC
GTTACTCCAC GAGCTAGCTT TGAAGACTAA TTAGGTTGAA ACTCGAATTC TTAGTAATAG AATTTAACGT ATTGGTTGTT
GTTGGATCTA ATGATCTATG GGGTTATTTG TTATCATGTT ATTATTGAAC CATCTATAAT GTCTTGTAAA CTCTAATTGT
CTAGTTACTG ATGTGAAAAG TGTGGGTTGG AGATACGGAC TCAAATGTTA TATATGACCC TATGAGCTAG ATTTTGGGTT
TAAGTCAAGT TCGAACTGCA ATTCTAGGAG AGTGATCTGG GTTCTAAGAA GGGAATATAC GTAGAAGAGT GCTAGGAAAA
CAATTTCTAA CACATTCTTT CTAAAGCTCT CTGACCATGC CCTGATGAAA ACAATACAGG GTTGTTTCAA CTACATACCA
TTACCATCGC ATTTTTCTTA CAACATAAAA CTTGGTTGAT ACATCCTTAT TCCAAATGTA CTGGAAATTT GGAACTTAGA
AAGAGTAAGC ACATGTTGAA CTTGGATTGG GCAGCGGAAT GGGCTTGGAT CATATACCCA AAAAGAAATA AGGGAGACAA
TTTATTGGTA AGGGAGAAAA GAGCATAGGG TGAAGAGGTT AGGCAAGACT GCAAGATTTC AGTGCTTTGG CATTTGGAAC
CCCCTTCTTT ATTTTCTCTT GTTCATTTCT TCCTTGTAGC TATGCATTTT AACAGGCATC CTTTTGTACC CAGGAACTAG
TTTACCAATA CACATCTATG TTTTCACCTT CATCCTATCA TTGGTCAATT TTGCAAACAT GATAAATTAC CTAACTAAAT
TTATGGATTT GCTATTGAGA CAGGTTGAAT CAAAGAAATT TAGTCTTCTT GCAAATTGGC AACGAAGGTT TACCATGGAA
GATATATTGA CCCAATTGAA GAAGGAAATG GCAGCTTCAC ATAACCGCAA GCTTATCCAG CCTCCTGAAG GTACTTGCTA
TTAGTGTCCA AGATCATACC GGTATTAGGT CATATTGCAC TTGCAGTGTG CAATTTATAG TATCTAATAC TCTGGATCCT
TCTATGTTCA ACAACATACA GGGAATGTCC AAATGAGCTT AATCTTTATC TCCGTAGCCT GAGTTGTTTT TGTTGCCTTA
CATTCATACA TTATTGACTA TGTTGAACTC TCTTATTGAT GCTAAATATT GAAAGCAACT ATTTAAGTAG TATTTTCTAA
TTAGTGCTTC CCATTTTGTT CTTGCTTTTC TTTAATTCAC TTGCTTTCTG GCTTTAAATT TAGCGGGAAG CTACACTAAA
ATTGTGACAA ATGTTATTTA TTTGGGTGTA TGCATTGACT TCAG

>Vigan.04G350600.01
CCCTATTAGA CCAAATCGCT GTTGTAACCG TTTCTTTTTC TTTCTTCATT ATTATTCCGA AATTTGCCTT CGATTTTTTG
CTTACGCAGA TTCCCCTTTC CGTCAGACAT TTCCATACTT TGATCAGATC CACGACAATT GCTCATCCAT GACGCTTGGC
TCTGCGGGAT CCAGTGTCGT GGTTCCGAGG AACTTCAGAT TGCTGGAGGA ACTTGAAAAG GGAGAAAAAG GAATTGGAGA
TGGCACAGTT AGCTATGGAA TGGATGATGG TGATGATATT TACATGCGCT CTTGGACTGG CACCATTATT GGCCCCTATA
ATACTGTACA CGAAGGAAGA ATTTATCAAT TGAAGTTGTT TTGTGATAAA GATTACCCAG AAAAGCCTCC AACTGTTCGG
TTTCATTCAC GGATCAATAT GACTTGTGTT AATCATGAAA CTGGAGTGGT TGAATCAAAG AAATTTAGTC TTCTTGCAAA
TTGGCAACGA AGGTTTACCA TGGAAGATAT ATTGACCCAA TTGAAGAAGG AAATGGCAGC TTCACATAAC CGCAAGCTTA
TCCAGCCTCC TGAAGGTACT TGCTATTAGT GTCCAAGATC ATACCGGTAT TAGGTCATAT TGCACTTGCA GTGTGCAATT
TATAGTATCT AATACTCTGG ATCCTTCTAT GTTCAACAAC ATACAGGGAA TGTCCAAATG AGCTTAATCT TTATCTCCGT
AGCCTGAGTT GTTTTTGTTG CCTTACATTC ATACATTATT GACTATGTTG AACTCTCTTA TTGATGCTAA ATATTGAAAG
CAACTATTTA AGTAGTATTT TCTAATTAGT GCTTCCCATT TTGTTCTTGC TTTTCTTTAA TTCACTTGCT TTCTGGCTTT
AAATTTAGCG GGAAGCTACA CTAAAATTGT GACAAATGTT ATTTATTTGG GTGTATGCAT TGACTTCAG

>Vigan.04G350600.01
ATGACGCTTG GCTCTGCGGG ATCCAGTGTC GTGGTTCCGA GGAACTTCAG ATTGCTGGAG GAACTTGAAA AGGGAGAAAA
AGGAATTGGA GATGGCACAG TTAGCTATGG AATGGATGAT GGTGATGATA TTTACATGCG CTCTTGGACT GGCACCATTA
TTGGCCCCTA TAATACTGTA CACGAAGGAA GAATTTATCA ATTGAAGTTG TTTTGTGATA AAGATTACCC AGAAAAGCCT
CCAACTGTTC GGTTTCATTC ACGGATCAAT ATGACTTGTG TTAATCATGA AACTGGAGTG GTTGAATCAA AGAAATTTAG
TCTTCTTGCA AATTGGCAAC GAAGGTTTAC CATGGAAGAT ATATTGACCC AATTGAAGAA GGAAATGGCA GCTTCACATA
ACCGCAAGCT TATCCAGCCT CCTGAAGGTA CTTGCTATTA G

>Vigan.04G350600.01
MTLGSAGSSV VVPRNFRLLE ELEKGEKGIG DGTVSYGMDD GDDIYMRSWT GTIIGPYNTV HEGRIYQLKL FCDKDYPEKP
PTVRFHSRIN MTCVNHETGV VESKKFSLLA NWQRRFTMED ILTQLKKEMA ASHNRKLIQP PEGTCY*