GBrowse Details

Vigan.04G327100.01

Basic Information:
Name: Vigan.04G327100.01
Multiple alignment
Variant Information
Position: Chr04:44990151..44996988 (+ strand)
Length: 6838
Functional Information:
Description: Similar to Uncharacterized protein. [I1NA77, Glycine max]
GO: Biological Process: intracellular protein transport (GO:0006886)
Cellular Component: membrane (GO:0016020)
Molecular Function: SNAP receptor activity (GO:0005484)
Molecular Function: protein binding (GO:0005515)
InterPro: Target SNARE coiled-coil domain (IPR000727)
Syntaxin/epimorphin, conserved site (IPR006012)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.17,1.33,7.49,3.84,11.92,6.47,10.38,12.18
Automatic updates:
Name: BT097365 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-16I3 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:44990151..44990352 (+ strand)
Length: 202
Type: five_prime_UTR
Position: Chr04:44990353..44990508 (+ strand)
Length: 156
Type: CDS
Position: Chr04:44990626..44990751 (+ strand)
Length: 126
Type: CDS
Position: Chr04:44991510..44991669 (+ strand)
Length: 160
Type: CDS
Position: Chr04:44991780..44991865 (+ strand)
Length: 86
Type: CDS
Position: Chr04:44991968..44992036 (+ strand)
Length: 69
Type: CDS
Position: Chr04:44992137..44992181 (+ strand)
Length: 45
Type: CDS
Position: Chr04:44992299..44992361 (+ strand)
Length: 63
Type: CDS
Position: Chr04:44992448..44992524 (+ strand)
Length: 77
Type: CDS
Position: Chr04:44996682..44996697 (+ strand)
Length: 16
Type: CDS
Position: Chr04:44996698..44996988 (+ strand)
Length: 291
Type: three_prime_UTR

>Vigan.04G327100.01 class=Sequence position=Chr04:44990151..44996988 (+ strand)
CTTTGATCTT GACAATGGCC ACTGTGTGAA ACATGAAAAA AGTTGAGAAG TTAGTGTTTA TGGATGTTAC AGGCTGGAGG
GCGTTGAGTT CAACAAAGGG ATGAAGGTGT AACAGTGGAG TCTACAACAC TCACTCATCA ATATTCGGAA GAAAGAGGGA
AGAAATTTTT TTTTTCCCAA GGAACAACAC CAGAGTCAAG CCATGAGTGT CATCGACATT CTCACCAGAG TTGATTCCAT
CTGTAAAAAG TATGATAAAT ACGACGTCGA GAAACAAAAG GATTCCAATA TCTCCGCTGA CGATGCATTC GCAAAACTCT
ACGCCTCCGT TGATGCCGAA ATCGAGACCT TACTTCAGGT CACTCTTTTC AAATTCATTA CTAAATTCAT GTGGGAATTT
GTGCCCTAAC TCATGACATT TTTTGAAATC TTTATGAGTC CAATGTGATA GTATGTAGAG TGAATTTTTT TTCAGAAAGC
AGAAACCGCT TCCAAGGAGA AAAGTAAGGC GTCTACTGTA GCGATCAATG CCGAGATTCG TCGTACTAAG GCTAAGTTGT
TGGAGGAGGT TCCCAAGTTG CAGAGATTGG CTATGAAAAA GGTTGGTTCT TCGCTTTCTC TGCTTCTTGG TATCATTTGA
AAGGGTGTTT TTTGTTTTTG TTTGATTTGA TTTCTGTTTT TTTTTTCTTT CCGGGATTCT GTTAACTTTC TGGACTTTGT
CATTTGCATT TTTTTAGGAA TTAGGTTGGA ACCAGGAATT GCATTCAATG CATAAGATGT CTGTCCCAGT TCTGATTGAT
TAAATTAGTA AAGTATTGTA GTGGGCACTT TCATTTGAAG AGTAAATTGA TGATTTATGC AGTAATCGAG ATTTCTACAT
ATGAAAAAGA TACTTTGCCA TCTATTTTTT TCAATTACAG ACAGATAACA ACCCACTTTT AATAATAAAA TATTAAATTT
AGATATTTAA TTAAAATGTA AAATAAATTA TTGAATTAAA AAATTAAAAA CAGTTGTAGG ATAATATCAG CTCTAAGCTA
GCTAATCACA TGTTATCTGA AATGATCATT TATTTAATCT ACTTGAGGAG CTTTATATAA AATTTGGCAA TCAGAAGACA
GATTAAAGGG AAAAAAAAAT TCCAATTTCT TTTCCACCTA TCCATCCACG ATGAGATAGG TTTCCTGCTG ATTCTGTATG
TATTTTTGAC TATTTCCAGA AAATGTGGAC TTATTTTATT TGGCATGTAT GTTTCTCAAT AGTTCGACTG TCCTTTTTTG
ACAAAAATGC AGACACGTGT TCAAAATTAT TGATGATGTT ATACATTTTT CCAACGCATG GTACAATGTA TAATGGCAGG
TAAAGGGGCT TTCATCGCAA GAATTTGCTG CCCGTAATGA TTTGGTTCTT GCATTGCCAG ATAGGATTCA AGCTATCCCA
GATGGGACCC CTGCAGTACC CAAACAAACG GGAAGTTGGG CAGCTTCTGC CTCACGTCCT GGAATTAAAT TTGATTCAGG
TAATTGAAGT GATCCATGTC TCATAGTGAT ACAATCTTAG TGGTTTATAA ATAGGAGACT TTGTAATTGA TAGTCCTCCA
TTCAATTTTG TGTATCTTGT CAATTTCAGA TGGACAATTT GATGATGAAT ACTTCCATCA AACCGAAGAA TCAAGTCGAT
TTAGGCAGGA GTATGAAATG CGTAAACTGA AACAGGTAAG TAACTTGTTG CGTTGTGACC AGAGAGACTG AATTTTGCTA
GTCAATGTTG TTCAAGAAAT GGTTTCATTC AGATCTCGTT ATATGAACCA TTCTTAGGAT CAAGGTTTGG ATATGATAGC
AGAAGGATTG GATACTTTGA AAAACATGGC ACATGATATG AATGAGGTCA GTTTCCCTGT TGTGTTTGTC TTTATTCCAT
TGTGCATATA TGCATGCCCA TGTATTTTTT TAGCATTTAA GCTCATTATT TATGGGACAA GTGCAGGAAC TGGATAGACA
AGTACCACTG ATGGATGAGA TTGATGCTAA GGTGAGATTT GTCAATTTCT GCCTCTACCC ACAAGCTCCA AATCATGGAA
ATCAAAGTTT TTGAAACTGG AATTAGGAAG TTGAAGTTAA TAGGCCACTG ATTTTTTTGT CTTTATAGGT GGACAAGGCA
TCTTCCGACC TTAAAAATAC CAATGTTAGA CTTCGAGACA CAGTGAACCA GGTCTTTTTG ACTGAAAATC TTATTCTTAA
ATTTTCATCA GTGATGAATT TTATGTTGAA TCTTATATAG TTTTGGTTTT CATCCAGCTT CGGTCCAGTC GAAACTTCTG
CATTGATATT GTTTTATTGA TTATAATTTT GGGAATTGCT GCCTATTTGT ACAAGTAAGG TCCTATCCCT TTTTTCACAG
CTTGGAAAAT TTTGCTAGTC CCTTCTCTTT TCTTGTGTGT ATTTGAAGCT CAGTCCATAT CTTGTGTACT GCCTTGTAAG
TACCTGTTTA CCTGAATACT GCAAATTTGA TAATGTGGAA ATTTTAGGTT CATACTTTAA CCTTTTTGCC CTGTAAACTT
AAACATCTGA AGTTAGAAAT TGTTGCATGA TTTCCTAATA AAAGCATTCT TTACCTGTTT TTTTAGAGGG GCGTTTGTGT
CAAGTCTTCA TTGTATGAAA TTCATTCCCA AACATCATGA TTGGAAATAA ATTTTTGGCA TTCGAAATAT AATGTGTTTG
GTTAATATAG AGATTCCTGG AAATACACAT TCGTGAGAAT ATATTTTGCA GTTCTTAAAT TGCTCTCTAT TATAGAAAAT
ATTCCTTTTT CAAAATTTAA ATATTGTTTA TTCTTTTGGA GGAATCAATC TTGTTAATAT GCAGTACTTT TCGTTCTTTT
ATATATATTT ATTGCTTGGT AACATCAAAA TACAAAATAA AAAACAATAC AACTATTTTG GTTACTTTGT ATTATTATTA
CTGCATGCCG AAGAGAAATA ATTACTGTAG GAGTTATGAC ACAAAATAAC AATGTCGACA ATTATTCTAT AAATGTGACA
TCCCAATTAT ATAGAGAGCA TATATAATAA AGACGTCCAC ATGCATAATA TAGGAAAGCA GTTGAGAGTA AATAGGATTA
CAGTCATCCT CTAAGTAACT TCAGAATATA AGCCAAAGAG ATCTAAAATA TAAGCTGAAA TGGGAATTAG TATTTCAGAA
TAGCCAATCA AACTAATAAC GTTCTGGTAG ACTAGGCAGC AGCATCGTCC TCGGCTTCCA AAGCTGTCTC TAAAGGAACC
TCCTCGCCAT CTACTCCCAT CCAAATGGAT GATCATCGCA AAAGGAAAAC ATACACAAGC AATACAAACA AGCAAGGGTG
AGCTAGATAT AAAAATCATG TTATTCAATC ACATACGACA TGCAAAAGTC ACTCAAACAT AGTACATTGA CATCACAATG
ACCCATTGCT TTATAGACTG ACTCGTCCGG ACCGGAATGA TTGCCGAGCT ATGGCGGGTT ATGCACTCGT GGTGGCCTCT
ACTGCTTTGC AAAGCCGTTG CCAATGGGTT CCACCCTACC ACACTCACGA GGTTAATTCG TTCCGCGCCC TAGAGCATAC
TGGAAGCCTC CAAGACTAGG ACCTCCTGCT ACTCCTCACC ACATGGATCA ATCCTCTCTA CTTGAGAATA AAAGACCATT
GGAGCGTCAG GAAAACCCCC AAGACTGAGC TACCATGCAA TCATTCTACA CTAAGGATCT CACCAAGAGA TCCTACACAG
ATGGAACTTG ATTTACAACT TGGATCATAC TTTCATCACT TTGTAATCAT ATACTTTCTG CCACAATCAA CATATACACA
ATCTCAACAA TATACATTAC TCACCACTCA CAAATTATAA AAATAACATC TCCACAATTG AATCTAAGTT AATCAATACC
AAGAACCAAA CAGCTCCAAC TAACCCATAG CAGCTCATAA AATGCATCAA TTTATACATA CCTACAAGTA ATATAATTAT
CGATTAACAC TCACGTTTCA ATATAAGAAA CAACTATCCT TACTTTATTA TTATTATTAT ATATATATAT ATATATATTT
ACATTATATT ATTATACATA TATATAATAC GTAACATTAT AAATATATAT TTTTATATTA TATTAAACTA ATATATTATT
AAATATATAT ATATATATAT ATATATATTT ATTTATTTAT TTATATATGG ATCCTTACTT TAAATTCCAA ACACACAATG
ACTGATTTCC TAAAATTATA ATTGACTAGA AATTAACACA TGATAACTTT ATGCATCTAC AATCAACTTG TTTTATTTTA
TTTTCATCCT AGTAGAGATC TTTCTTTACC CCAATTGGTC ATCGGAGAGG ACCCAGATGT CTGAACGCAT CAAACTCACC
TTCGACGCCA ACACATATGA CTAGTCACAA CTGACTGGAC CAGGCCAGGG CTGCTCTATA ATCAGGGATG TGCCAACTCA
GGTTTTTAAG GTTCTTCTAT CCTACCAACA AAGAAAGGCT CTCAACAATT AACAATTAAT TTATTTAAAT TATCTACCCT
GTTCTCTTAT GCTCTAAATC TGAAATGCCT AATTTTAATA TTTTCACTTC CTCTCACAGC AACCTCAAAC AGTACCTGTA
CATCTATTTA ATACCCATAT ACATGCTATT ACAGAACCCT TACTCCAGAC CTTCCAACAA GATCAATTTC AGCCAACAAA
CTCATTCAAA ACAGATTAAA TTCATCACAT CACAACATGC ACAATTTCAC AGTTTCAGTT ATAACACCCA ATACCATAAA
AGTCATAAAA CAGTTTCACA AGAGCACACC AGTTCAACAT TCATATGCAT ATATTTTTAT AAAATAAATT CATACAAAAA
TAATTAGCTC CCCTTACCTT GAAGTTGAGC ACTATAGTCA ACTAGAGTGC CCTAACCGTG CCTTCACAGA GAAAACTCAA
ATAGTGCCCT ACAACCACCT AAATGGTGAT GGAAACAGCT CTTAGAGCTA GAATAGACAG AGAATCAAAA GGAGCACCAT
GCAACCAGTA AAGTTGCATG CCCTAAGTTC AAGAAAAAGT GGAGAAACTG ACTTACCCGT CCAAATAGAA ATCTAATCGG
ATAGAAGGGA AGCTCTCAAC TCCGTGAGCG AAAGAACACC ACCTATTTGA AATTTCAACA GTTCAAATGA GTGCAAGGGT
AAAGAGAAGG CAGAGCAAGA AGGAGAAAAT GGAGATGAGT TTAGAGAGAG AAAAGGGAAC TGGAAAATGA ACTCAGAGCT
GGAAAAATGA GGCATCTTCT GAGGTCCTAG TACCCTTAGC TTCTTGGGCC AGGCTGCAGG GCCCAGTAGC CTTACATTTT
CAGGCTCTTA CAGTAAACAT ATTCAAATTA TTGTTACATA GCAAGATTTT GGCATAAAAG AATGTAAAGT GAAGCTACCC
TAGATGAATC ATAACCAACA TTTGAATACA TGCCTACCAT ACGGGACCTG GAGTGTATAT TGAGAAATTT ATGTGGGAAA
TACGTGGGTA TTACATATTT TAGAACTTTT TGAATAAAAG TTTTCTTCCC ATTACTACGC ATGGAAATGC ATCTTTCCAG
ACATACGTGC GGGAATGAAA ATCCATTAGA ACTCATACCA GAAAATAAAT ATTTTTTAAA CTCCTATCAA ACCAAGGAAT
CTTTATTCCC TTACCTGTAC TCATGGCAAT GCAGCCTTTA CTATATACAT TATTCCCAGC GGCCCCTTTA CTTTTTTTCT
GATATTCAAT TTTCACTTAT CCCTTTTCTT TGTAATTGAT CATACCATGA TATCCCTTAT CTTTATCACA ATAAAAAATT
GTTTCCACAA CTCTATTAGA ATTCTTTGCT TTAATTGGGA GGAATTGTTG GTCTGCATTA AGTTTGATTA GGCATTCCTT
TAAAAACAGA GGAATATATA TGTTTATCAT CTAAGGCTTC ATTACATCCG AGGGGAGAAG CCCGAAGTTC CACACAAGTG
CATCGATTAT AAAGTTATTT TGATGAATGT TTCTCTAGAT TATTCGCTGG TGTTCTAGTT AAATAATAAA TGGTGTATCA
AATACTTGTG TATTTATTTC ATTTTCACTA CCGGCTTCCT GCATAAGGAC TTGTATAGTA AAACTAGAAC CATAATTTGA
AATGGTTATT TGCCAACTTC CTCTCAAAGG AATTTCTGAA TTCTGTGAAG TTTTTAATGA TACCGGCAGA TAAAAAAGCT
TAGCTTAGCT ATATATACAA GGATCTTGTT GATGTTATGA TAGGAAGTAT AAATCTCTTT GATTTGTTAG TCTTGGGGCG
ATGATGTCTC GTGTCCTGAT ACTACACACA CACACATATA TATATATATG AAATCCTCAA ATTTTTGGAT GGTTGTTTCT
TGTTTCTTTC CTGATAGGAT AGGTGAGATC TTTAATATCA TATTGTGTGT TTGATATGGC TTTTACTAGT GTTGTGTGTT
TCCTTATTCT TCTTGAGATA CCTTCCCTGA CCTGCCGTGC TCTTATTGCA GTGTGCTAAA GAAATGATAC GGCATAGAGG
ACAGATCATT GGATCAATTT GTATGGCATA TCTGTATCTC TTGTATTTTC TTGGTTGTAT CGTGGTGTGA CTCATGTCTA
ATTTTTTTTA AAAACAATAT TTTGCACTTG TTCCTGTTAC TTACGAGATG CACTTGTCCT TTATACAGAC TCAAGATGCC
ACTAAATTAT GTCACACTGC GAATTTGTAT TCGTATTGAC ACTTGTGTAT ATCAAATTAA GATGGATTAT CTATAACAAA
AATAAAATAA AATTTAATGC CAGTTTTTAT TTTACAAA

>Vigan.04G327100.01
CTTTGATCTT GACAATGGCC ACTGTGTGAA ACATGAAAAA AGTTGAGAAG TTAGTGTTTA TGGATGTTAC AGGCTGGAGG
GCGTTGAGTT CAACAAAGGG ATGAAGGTGT AACAGTGGAG TCTACAACAC TCACTCATCA ATATTCGGAA GAAAGAGGGA
AGAAATTTTT TTTTTCCCAA GGAACAACAC CAGAGTCAAG CCATGAGTGT CATCGACATT CTCACCAGAG TTGATTCCAT
CTGTAAAAAG TATGATAAAT ACGACGTCGA GAAACAAAAG GATTCCAATA TCTCCGCTGA CGATGCATTC GCAAAACTCT
ACGCCTCCGT TGATGCCGAA ATCGAGACCT TACTTCAGAA AGCAGAAACC GCTTCCAAGG AGAAAAGTAA GGCGTCTACT
GTAGCGATCA ATGCCGAGAT TCGTCGTACT AAGGCTAAGT TGTTGGAGGA GGTTCCCAAG TTGCAGAGAT TGGCTATGAA
AAAGGTAAAG GGGCTTTCAT CGCAAGAATT TGCTGCCCGT AATGATTTGG TTCTTGCATT GCCAGATAGG ATTCAAGCTA
TCCCAGATGG GACCCCTGCA GTACCCAAAC AAACGGGAAG TTGGGCAGCT TCTGCCTCAC GTCCTGGAAT TAAATTTGAT
TCAGATGGAC AATTTGATGA TGAATACTTC CATCAAACCG AAGAATCAAG TCGATTTAGG CAGGAGTATG AAATGCGTAA
ACTGAAACAG GATCAAGGTT TGGATATGAT AGCAGAAGGA TTGGATACTT TGAAAAACAT GGCACATGAT ATGAATGAGG
AACTGGATAG ACAAGTACCA CTGATGGATG AGATTGATGC TAAGGTGGAC AAGGCATCTT CCGACCTTAA AAATACCAAT
GTTAGACTTC GAGACACAGT GAACCAGCTT CGGTCCAGTC GAAACTTCTG CATTGATATT GTTTTATTGA TTATAATTTT
GGGAATTGCT GCCTATTTGT ACAATGTGCT AAAGAAATGA TACGGCATAG AGGACAGATC ATTGGATCAA TTTGTATGGC
ATATCTGTAT CTCTTGTATT TTCTTGGTTG TATCGTGGTG TGACTCATGT CTAATTTTTT TTAAAAACAA TATTTTGCAC
TTGTTCCTGT TACTTACGAG ATGCACTTGT CCTTTATACA GACTCAAGAT GCCACTAAAT TATGTCACAC TGCGAATTTG
TATTCGTATT GACACTTGTG TATATCAAAT TAAGATGGAT TATCTATAAC AAAAATAAAA TAAAATTTAA TGCCAGTTTT
TATTTTACAA A

>Vigan.04G327100.01
ATGAGTGTCA TCGACATTCT CACCAGAGTT GATTCCATCT GTAAAAAGTA TGATAAATAC GACGTCGAGA AACAAAAGGA
TTCCAATATC TCCGCTGACG ATGCATTCGC AAAACTCTAC GCCTCCGTTG ATGCCGAAAT CGAGACCTTA CTTCAGAAAG
CAGAAACCGC TTCCAAGGAG AAAAGTAAGG CGTCTACTGT AGCGATCAAT GCCGAGATTC GTCGTACTAA GGCTAAGTTG
TTGGAGGAGG TTCCCAAGTT GCAGAGATTG GCTATGAAAA AGGTAAAGGG GCTTTCATCG CAAGAATTTG CTGCCCGTAA
TGATTTGGTT CTTGCATTGC CAGATAGGAT TCAAGCTATC CCAGATGGGA CCCCTGCAGT ACCCAAACAA ACGGGAAGTT
GGGCAGCTTC TGCCTCACGT CCTGGAATTA AATTTGATTC AGATGGACAA TTTGATGATG AATACTTCCA TCAAACCGAA
GAATCAAGTC GATTTAGGCA GGAGTATGAA ATGCGTAAAC TGAAACAGGA TCAAGGTTTG GATATGATAG CAGAAGGATT
GGATACTTTG AAAAACATGG CACATGATAT GAATGAGGAA CTGGATAGAC AAGTACCACT GATGGATGAG ATTGATGCTA
AGGTGGACAA GGCATCTTCC GACCTTAAAA ATACCAATGT TAGACTTCGA GACACAGTGA ACCAGCTTCG GTCCAGTCGA
AACTTCTGCA TTGATATTGT TTTATTGATT ATAATTTTGG GAATTGCTGC CTATTTGTAC AATGTGCTAA AGAAATGA

>Vigan.04G327100.01
MSVIDILTRV DSICKKYDKY DVEKQKDSNI SADDAFAKLY ASVDAEIETL LQKAETASKE KSKASTVAIN AEIRRTKAKL
LEEVPKLQRL AMKKVKGLSS QEFAARNDLV LALPDRIQAI PDGTPAVPKQ TGSWAASASR PGIKFDSDGQ FDDEYFHQTE
ESSRFRQEYE MRKLKQDQGL DMIAEGLDTL KNMAHDMNEE LDRQVPLMDE IDAKVDKASS DLKNTNVRLR DTVNQLRSSR
NFCIDIVLLI IILGIAAYLY NVLKK*