GBrowse Details

Vigan.04G304800.01

Basic Information:
Name: Vigan.04G304800.01
Multiple alignment
Variant Information
Position: Chr04:42756818..42760112 (+ strand)
Length: 3295
Functional Information:
Description: Similar to Auxin-induced protein. [V7CWI0, Phaseolus vulgaris]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: AUX/IAA protein (IPR003311)
Aux/IAA-ARF-dimerisation (IPR011525)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.23,1.59,140.40,62.30,214.25,21.86, 12.75,252.47
Automatic updates:
Name: NM_001249764 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max auxin-induced protein AUX28 (AUX28), mRNA.
PubMed ID: 8490133 NCBI(pubmed)
2899079 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:42756818..42757317 (+ strand)
Length: 500
Type: five_prime_UTR
Position: Chr04:42757318..42757592 (+ strand)
Length: 275
Type: CDS
Position: Chr04:42758530..42758756 (+ strand)
Length: 227
Type: CDS
Position: Chr04:42759063..42759198 (+ strand)
Length: 136
Type: CDS
Position: Chr04:42759505..42759572 (+ strand)
Length: 68
Type: CDS
Position: Chr04:42759664..42759701 (+ strand)
Length: 38
Type: CDS
Position: Chr04:42759702..42760112 (+ strand)
Length: 411
Type: three_prime_UTR

>Vigan.04G304800.01 class=Sequence position=Chr04:42756818..42760112 (+ strand)
TGATAATAGA CATGATTTGA GAAGGGAAAC AGGAATAAAA GCAGAAGAAT AATTTAGAAT GAAAAAGGCG TAAAGGGAGT
GAGTGTGTGT GAAATGACGA AACCCTAGGA TGAATAAAGA AATGAAGTGT GTAAGCAAGC AACATGGGGT GTCCACTTCC
GCTTCTTCCA CTGAACAATC ATAGGAAGAT AACATCAGGT TGTCGTCAGC AAGGGCAGCA TGAACAGAAA AGTCCAGCTC
ACACATTCCT CCACGTGTCA GAAACCCATT CCCTCTAAAA AATTTCGATT AAAAAGACAG GACGCACCAT GCGTCCTTGT
ATTAATGGGC ACCACGCCCA AACGCTACCC TCCTTAAACG TCCCCTTGTC CTGCCCCTGC CCCTATACCA TAGTACATTA
GTACCCCCAC CTCCTCCTAT CTTTCACTAT TATTGCCACA TACCAAACAA ATAACTGAAT GCTTAGAGAG AGAAACACTG
ATATAAGAGA CTGAAAACTC ATGGAGGTTG GCCTCAACAA GGAGAACATG GGCTTTGAGG AAACTGAGCT AAGGCTTGGA
CTCCCTGGAG GAAACGCTGC CTCACCCACT GAAGAACTTC TTAGGAAGAG AGGTTTCTCT GAGACTCAAA CTCACCATGA
CACTGCCACC GTAGATTTGA TGCTTAATCT TTCATCCAAG GAACCAACCA CTGGACCAGA TCCATCTCAT AAACACAACA
CCTTGCCTAA GGACAACACC CTTCTCCCTG CAGATCCTGC TAAGCCTCCA GCCAAGTAAG TTTTTCGTTA CAAAATTCTC
AAACACCTCA TTTAATTTCT TCTCTATTTT CCACCTAGTT AACTCTACCT TTCATGATAC ACACAGAGAG AGTGTGTGTG
TTAATAAGCT TGTAAACAAG GCTTTATATA GTATCATATA CTAATTCATG GTATGGTCTA GGGCTAATAA GCAAGTAAAT
TTTATATGTG TGACGCTTGA TGTGGAAAAG ATAGAAACGG TGGGAAGAGA TGAGATCGTG GAGGGTGGAA TAAAGAAATG
AAAGAGACTG AAACATAGAC TTGTGATAGA GAGAGGGGGG TGAGAGAGTG ATTAAAAAAT ATACTTTTGT GAGTTTTTTC
CAAAAGAAAT ATTTTTATTT CCTTTATACT AATATGCAAT GGAAAAATAA GACGCTCTCA ACTCTCGTAC AACATAAATA
TGGAATCACG TACGGGTTCA TGCCAAAACC GTGTTCTACT TGCCTAGCCA GTTATGGAGA AAAGTGCAAT AATTTACAAT
TATGTCTGAA AGTTTTGATG ATAGGTAGTA CACCAGAAAA AAGTTACACC TTTCTTGTCC TCATCGGCCA TAGCATCATT
TCTTCTTCTG ACGATTCATT TACGCAGCGA TGTAAAACAC GGTATGGGTT AATAAAGGTA AAACTACACC AGTAAATATA
AATAGCTAGC TCGTCTTCAA AAAGGATATA AAAGGAGGGT TGGATTATGG TATAATAAAA CAGAAACATA AATTCTTACG
TGCTTAATTA ATCTATTTTT CACGCAAAGT TATATGGCTC TCAGCCTCTC AGTTTCATCA CCAACTCTAT CTGTAGAATT
TGATTTATCT AATAGTTTGG TTATAGAATA ATTAACCACA TGTTTGGATG ATGAGTTGTG TTGTATATTG TTTTGATGAT
AACAAAGTGA TGAATTGAAA TGAAATGCAT AGGGCACAGG TGGTGGGTTG GCCACCTGTG CGGTCGTTCC GGAAGAACAT
GTTAGCTGTG CAAAAGAGTA TTGGAGAAGA GAGTGAGAAG AATAGCAGCC CTAATGCAAG CTTTGTGAAA GTTAGCATGG
ATGGAGCACC TTATCTCCGC AAAGTGGACT TGAAGATGTA TAAGAGTTAC CGCGAGCTCT CTGATTCTTT AGGAAAAATG
TTCAGCTCCT TCACCATTGG TAAATACTTA AGCCTGTGTT TTTAAATGAT GATTCATTTT CCCAAAACAA ACCACCAGTT
TAAAAGTGAA ATCAAGATTT TGCATGCATG TTTTTTTTAT GAAAATAGTT TTGTTTGTAT AGAACTTCAA CCTTAACTTC
TTTCATCCTC TTTTCAAATC TTTCAACGTT ATATCGGGAA AATTTTAACC TGTAACTTCT CTCACCCTCC CTTTCAACTT
TTTGCATGCA TGTAATACTT AGAAGCTTGA TGATTAGGGT TTGTAATGAT TATGAATTAA TGGTGCACGA TGTATGCAAT
GGCAGGGAAT TGTGAATCCC AAGGAATGAA GGATTTCATG AATGAGAGCA AACTGATGGA TCTTTTGAAC AGCTCTGATT
ATGTCCCAAC CTATGAGGAC AAGGATGGTG ACTGGATGCT TGTCGGTGAT GTCCCATGGG AGTAAGTCTT TCACCTCTGT
TCGATGTCAC TCCAAATCAG CTTGACCACC ATAATTGAAC TTTGTATAGT AACTCTAAAG AAGACTCTAT ACAGAAAACT
AACTTACTTG CATCATAATA ATTGCTTGTA TATTATATCC TCATTAATTA TGCACCTATT GAATGTGTAC TTTGATGATA
ATTAATGAAG CCATTTTGGT ATAAAATCTT AGAAATTTAA TAAATAAAGA GAATGAATAT GAACCATGGT TGAACATATA
GACAGCACAG GCTAAGGAAT AACATGTATT TTGTTCATGT CAACCAGGAT GTTTGTTGAA TCATGCAAGC GTTTACGCAT
CATGAAAGGA AAGGAGGCGA TTGGTCTTGG TCTTGGTAAG AAAAAGTGCT ATTTAAAAAC CTTGTATTTA ATTAATTGAT
TTAGATAGAG ATTCTGAAAA ACGTTGTTTG AATTTGATTA TTTCAGCACC AAGAGCCATG GCAAAAAGCA AGAACAGGAG
CTAGACTAGT GGGACATTGA TGACCTGGTC CATCCTTTGT GATTGTGGTG CCCAGTTGGG TTAGTAACTA AAGTAAGGAT
AAGCAGCAGC AGCAGACAGG GATGGACATT GCAGGGTGTT GAATTATAGT TAATTTGTGT ATCATTATGG TTTGTTATAT
GATATTTCAA ACAAAACAAT CAGATGGATG CATGTCTAAT TAAGTACTAA TCATGAACAG AAACATAATG ACTCTCAATT
ATGTTGTTGT TAGACTTGGC TTTCTTATAT ATCTCTGCTT GTGTTGTGTG AGTGCTTGCT TAATAATAAT TTTAAGATGT
GTTTGTCTGT TGTAGTTGTA GCGACATATT ATCATGCTTT ACATTTAAAA TTGTCTTGTA AAGTTTTCCC TTATCATTAT
GAGATTCCTT GCTAT

>Vigan.04G304800.01
TGATAATAGA CATGATTTGA GAAGGGAAAC AGGAATAAAA GCAGAAGAAT AATTTAGAAT GAAAAAGGCG TAAAGGGAGT
GAGTGTGTGT GAAATGACGA AACCCTAGGA TGAATAAAGA AATGAAGTGT GTAAGCAAGC AACATGGGGT GTCCACTTCC
GCTTCTTCCA CTGAACAATC ATAGGAAGAT AACATCAGGT TGTCGTCAGC AAGGGCAGCA TGAACAGAAA AGTCCAGCTC
ACACATTCCT CCACGTGTCA GAAACCCATT CCCTCTAAAA AATTTCGATT AAAAAGACAG GACGCACCAT GCGTCCTTGT
ATTAATGGGC ACCACGCCCA AACGCTACCC TCCTTAAACG TCCCCTTGTC CTGCCCCTGC CCCTATACCA TAGTACATTA
GTACCCCCAC CTCCTCCTAT CTTTCACTAT TATTGCCACA TACCAAACAA ATAACTGAAT GCTTAGAGAG AGAAACACTG
ATATAAGAGA CTGAAAACTC ATGGAGGTTG GCCTCAACAA GGAGAACATG GGCTTTGAGG AAACTGAGCT AAGGCTTGGA
CTCCCTGGAG GAAACGCTGC CTCACCCACT GAAGAACTTC TTAGGAAGAG AGGTTTCTCT GAGACTCAAA CTCACCATGA
CACTGCCACC GTAGATTTGA TGCTTAATCT TTCATCCAAG GAACCAACCA CTGGACCAGA TCCATCTCAT AAACACAACA
CCTTGCCTAA GGACAACACC CTTCTCCCTG CAGATCCTGC TAAGCCTCCA GCCAAGGCAC AGGTGGTGGG TTGGCCACCT
GTGCGGTCGT TCCGGAAGAA CATGTTAGCT GTGCAAAAGA GTATTGGAGA AGAGAGTGAG AAGAATAGCA GCCCTAATGC
AAGCTTTGTG AAAGTTAGCA TGGATGGAGC ACCTTATCTC CGCAAAGTGG ACTTGAAGAT GTATAAGAGT TACCGCGAGC
TCTCTGATTC TTTAGGAAAA ATGTTCAGCT CCTTCACCAT TGGGAATTGT GAATCCCAAG GAATGAAGGA TTTCATGAAT
GAGAGCAAAC TGATGGATCT TTTGAACAGC TCTGATTATG TCCCAACCTA TGAGGACAAG GATGGTGACT GGATGCTTGT
CGGTGATGTC CCATGGGAGA TGTTTGTTGA ATCATGCAAG CGTTTACGCA TCATGAAAGG AAAGGAGGCG ATTGGTCTTG
GTCTTGCACC AAGAGCCATG GCAAAAAGCA AGAACAGGAG CTAGACTAGT GGGACATTGA TGACCTGGTC CATCCTTTGT
GATTGTGGTG CCCAGTTGGG TTAGTAACTA AAGTAAGGAT AAGCAGCAGC AGCAGACAGG GATGGACATT GCAGGGTGTT
GAATTATAGT TAATTTGTGT ATCATTATGG TTTGTTATAT GATATTTCAA ACAAAACAAT CAGATGGATG CATGTCTAAT
TAAGTACTAA TCATGAACAG AAACATAATG ACTCTCAATT ATGTTGTTGT TAGACTTGGC TTTCTTATAT ATCTCTGCTT
GTGTTGTGTG AGTGCTTGCT TAATAATAAT TTTAAGATGT GTTTGTCTGT TGTAGTTGTA GCGACATATT ATCATGCTTT
ACATTTAAAA TTGTCTTGTA AAGTTTTCCC TTATCATTAT GAGATTCCTT GCTAT

>Vigan.04G304800.01
ATGGAGGTTG GCCTCAACAA GGAGAACATG GGCTTTGAGG AAACTGAGCT AAGGCTTGGA CTCCCTGGAG GAAACGCTGC
CTCACCCACT GAAGAACTTC TTAGGAAGAG AGGTTTCTCT GAGACTCAAA CTCACCATGA CACTGCCACC GTAGATTTGA
TGCTTAATCT TTCATCCAAG GAACCAACCA CTGGACCAGA TCCATCTCAT AAACACAACA CCTTGCCTAA GGACAACACC
CTTCTCCCTG CAGATCCTGC TAAGCCTCCA GCCAAGGCAC AGGTGGTGGG TTGGCCACCT GTGCGGTCGT TCCGGAAGAA
CATGTTAGCT GTGCAAAAGA GTATTGGAGA AGAGAGTGAG AAGAATAGCA GCCCTAATGC AAGCTTTGTG AAAGTTAGCA
TGGATGGAGC ACCTTATCTC CGCAAAGTGG ACTTGAAGAT GTATAAGAGT TACCGCGAGC TCTCTGATTC TTTAGGAAAA
ATGTTCAGCT CCTTCACCAT TGGGAATTGT GAATCCCAAG GAATGAAGGA TTTCATGAAT GAGAGCAAAC TGATGGATCT
TTTGAACAGC TCTGATTATG TCCCAACCTA TGAGGACAAG GATGGTGACT GGATGCTTGT CGGTGATGTC CCATGGGAGA
TGTTTGTTGA ATCATGCAAG CGTTTACGCA TCATGAAAGG AAAGGAGGCG ATTGGTCTTG GTCTTGCACC AAGAGCCATG
GCAAAAAGCA AGAACAGGAG CTAG

>Vigan.04G304800.01
MEVGLNKENM GFEETELRLG LPGGNAASPT EELLRKRGFS ETQTHHDTAT VDLMLNLSSK EPTTGPDPSH KHNTLPKDNT
LLPADPAKPP AKAQVVGWPP VRSFRKNMLA VQKSIGEESE KNSSPNASFV KVSMDGAPYL RKVDLKMYKS YRELSDSLGK
MFSSFTIGNC ESQGMKDFMN ESKLMDLLNS SDYVPTYEDK DGDWMLVGDV PWEMFVESCK RLRIMKGKEA IGLGLAPRAM
AKSKNRS*