GBrowse Details

Vigan.04G286600.01

Basic Information:
Name: Vigan.04G286600.01
Multiple alignment
Variant Information
Position: Chr04:40896398..40899591 (- strand)
Length: 3194
Functional Information:
Description: Similar to Uncharacterized protein. [K7LD83, Glycine max]
GO: Molecular Function: DNA binding (GO:0003677)
Molecular Function: chromatin binding (GO:0003682)
InterPro: SANT/Myb domain (IPR001005)
Myb domain, plants (IPR006447)
Homeodomain-like (IPR009057)
Myb domain (IPR017930)
MYB-CC type transcription factor, LHEQLE-containing domain (IPR025756)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.38,0.13,2.23,2.30,44.38,3.99,19.38 ,0.53
Automatic updates:
Name: KT031205 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_162 MYB/HD-like transcription factor (Glyma19g32850.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:40896398..40896637 (- strand)
Length: 240
Type: three_prime_UTR
Position: Chr04:40896638..40896847 (- strand)
Length: 210
Type: CDS
Position: Chr04:40897336..40897405 (- strand)
Length: 70
Type: CDS
Position: Chr04:40897503..40897557 (- strand)
Length: 55
Type: CDS
Position: Chr04:40898034..40898150 (- strand)
Length: 117
Type: CDS
Position: Chr04:40898231..40898444 (- strand)
Length: 214
Type: CDS
Position: Chr04:40898536..40899129 (- strand)
Length: 594
Type: CDS
Position: Chr04:40899130..40899591 (- strand)
Length: 462
Type: five_prime_UTR

>Vigan.04G286600.01 class=Sequence position=Chr04:40896398..40899591 (- strand)
ATCGACCTTT GTTGTTGAAC TTGTCCTCTA TGGAACTTCC CTTAACCTCT TTTTAGACCC ATCTAACTTA GGTTGCTTAG
TGTTCCTACT TTTCCTATTG ATTCTTTTGC ATTTGGTTTT AATTCACGTG AAGACAACAT TTCGACAAAA CTTTTTGTTT
GTTTCCATGT ACTCTACTTC GTTAATGTCA ATTCTTTATT GTTCATTCTT ATCCCTTTTT TCAAGAATAA TTAATAGCTA
ATGACCTTGC ACGGTAGCAT TTAGACAGTT AGATTCAAAT CTTATACCTC AAGCCTTTCG GAATATAAAA CATAATTTTT
ATGAGCTTTC CTATTGTTAC CTTTCCAATC TTCTTCTCCC CTCCCCAATC TTTATGTGCT TCCAAAGAGT TCTTTTATTT
ATTGATATAT GCATTAGTCT TATTACCATC CTACATCAAA ATTTTGGGTC CATATTGTGT CAATGAACGA GAACAAGGTT
CATTGGGGAG GCTTGATTCA ACAAAGTCAT GGACTAAGTG GGGATTTTAA TTCTGAGTTT GGTAATCATT ACTGTCAATA
TTTTGATATC AGACAGCCCT GGAATATGGG ACCACTTGCG ATGGTTGGAA GAGAAGCCAC AGATCAGTTG CCAAACATAG
GCCATGTCAA ATCATCTGGC ACCATTATCA GCCGTTTTGA GTCACCAGCT TCTGCCTTTT ATGCTGCCGA AAACTGCATG
GGATTTGCAG AATATGATTG CCAACTTGGT GTTCAATCTC AGTTATGCAA GATTAATGAC TCGGAATTCC CTTTGTATCA
ATCTCCCAGG GACAACCTTT TCTTGGACTC AGCAAACCAA CCTGACTTAA GCTATGATTT TTCAAACACT TTGCAGTCCA
TAGTGAAATC TCAATTCAAT AATGATCAAT GTCGTGTATC CCCTGAAAAG TTCAATAAAA TTTCATGTGG GAATTTTCCC
ACCACCAAGT TCCTTCCAAT TGAACAACAG AAGTTGTTCA TTGATGGTGT CATCAGGGGC TCCTCATTTC CTAACAAAGG
AATTCAGGAT CGCACGGTAA GTTTTCCTTT TGGCAAAGCC CACATGAAAA TTTTTTCATG TGTCCATTAC TGAAGATTCT
TTATGAAGTT AATTTCCTTG TTTGCAGGTT GCTCGTGGAT CTTTTGATTT ACCTGTTGCA CATATGAGAT TTTCTTCTCA
GATCGAGAAG TTATCTCCAA CACTTTCAGC AGGAAGTGTG TCAACTGTTG GAAACTCTGC TTCTAATGGG GCAGCAGTCT
CAAGCAAAAC ACGTATAAGA TGGACTAAGG ATCTTCATGA GAAGTTTGTT GAGTGTGTGA ATCGCCTTGG AGGCTCTGAG
CGTATGTAAC TTAACTAAAT TTTCTAATTG GCTATGCATC TGTGTAACAT CTGATAATCC TCTGTTGCTG TTTGACTGTA
GAGGCAACAC CAAAAGCTAT ATTAAAGATG ATGGACACAG ATGGTTTGAC TATCTTCCAT GTCAAAAGTC ATCTGCAGAA
ATATAGAATT GCAAAATTCA TTCCAGAGCC TAGTCAAGGT GAATTCTATT TTGTTATTTA CCAGACTTGC AGTGTAGTTT
CTTTTTCATG TCATGTACAT TTCTTTGTGC CTGAATTTAG TGACATTCAT GTCACAAATG ATGAAATACC TTCTTTTTCC
CTTTGTTTTG ATTCTTTAAT TGTTGTTGAG ACTTAAATAA ACTAATGTAG ATTGCAGAAG TTCCAATGCA GAATAACTGC
ATTTCTTCCC TGACATGGTA GAAAGTTTGA CTTGATCTCT TTCGTACGAG TTATGTTATT CATACAACAG CTCATAATAT
TCTATACAAC ACTTAATCTA TCTCTATCAC AAAACCTATT ACATCTTATA TTTTTCTTCT CCTTTAGGAT ATGACCTATT
GTTCTCCTTT GCGTTATTCT TCCCACAAGT TATTCATGAT CTTCTTTGTT CTTTTATTCT TTCAAATATC AGGTTAACTC
CACATACTGA ACCGAAAACT TTCTTCTGTT TCAGGGAAAT CAGACAAAAG AAGCCACATA AAAAATGTGC ATCATCTTGA
TGTCAAAACG TAATGCTACT TAATATATTC CTGTAGTAAT AGTACTTCCT CAAGTTTCTT AGTTCGTTTT GTAATCTACC
AAACTAACAC TGTTCTTGAT CTTCAGAGGC TTACAAATTA GAGAGGCACT TAAGCTTCAA TTAGATGCTC AAAGGTGTCT
TCACGAACAA CTAGAGGTAT ATCCACGCTA TCATTTTTCT GGTGAATTTT TATTCCTACA TTGTACTTAA TCTGTGACCC
TTTCCCTCCT CTTGTAAGAA AAACTTGAAT ACTGGCCAAA CCAGCTGAAA GTTTCTTGAA TCTTAAACGT TGAATTTCAC
AATTTTTCAC CTTCAACCAG CTTTAGATCG AAGAAATGAT GTAGAGATTT TAGTCACAGA AGAACAATGA AATCCAATAC
CTCACATACT TAGAAGATAA AGTATCATTT TTACAAACAA ACTTCTAGAC ATCTCTATTT TGGCCTTTCT CTGATTCAAG
ACATACCCAT TTTGGCATAG GTGATGATGT GAAATTGCAC TGTCATGTGC TAAAATGTGG ATAACAATTA GGCACATATT
TTGAGGAATT GGATGCTAAA AGTAGTGAAT GAGAGGGTAT ATTTGGATTC TTTTAACACT CTGTCCTCAC TTAAGTTTTC
ATATAACTTA CTTTGGTGTT ACAGGTTCAG AGAAAATTGC AGCTGAGAAT TGAGGAACAA GGAAGGCAAC TAAAAAAAAT
GTTTGACCAG CAGCAAAAGA CAAGTAATAA CCTCTCAAAT ACTCAAGATT CAGGCACTGA TGAGACAACA ATTACTCATA
AAGATGGTGA AGTTTCTGTT TCTGAAGGAG CCAACAATTC CTTCTTCACT TCCCAAGCCT CTCCAAGCCT ATAATCTGAT
ATGGTTATGT ATAAAATTAC AGTTTTCTGC ATGCTTACAT CCTGTGATTT TGTTATAGCA TTGTTGTTTA TCCTACATAT
GCAAACTCTA TATGAATTAG TACATAATTT AGAGTGCTTA CATTATATAT TCTATAGAAA CAAACAAGTA GCATTGCTTT
ACTAGGGGAG GAGGGAATAA ACTTTGTAAG CAGAGTCTTA TGTGTTTTTT CAGCAAGAAG CCATTGTTTT GCTC

>Vigan.04G286600.01
ATCGACCTTT GTTGTTGAAC TTGTCCTCTA TGGAACTTCC CTTAACCTCT TTTTAGACCC ATCTAACTTA GGTTGCTTAG
TGTTCCTACT TTTCCTATTG ATTCTTTTGC ATTTGGTTTT AATTCACGTG AAGACAACAT TTCGACAAAA CTTTTTGTTT
GTTTCCATGT ACTCTACTTC GTTAATGTCA ATTCTTTATT GTTCATTCTT ATCCCTTTTT TCAAGAATAA TTAATAGCTA
ATGACCTTGC ACGGTAGCAT TTAGACAGTT AGATTCAAAT CTTATACCTC AAGCCTTTCG GAATATAAAA CATAATTTTT
ATGAGCTTTC CTATTGTTAC CTTTCCAATC TTCTTCTCCC CTCCCCAATC TTTATGTGCT TCCAAAGAGT TCTTTTATTT
ATTGATATAT GCATTAGTCT TATTACCATC CTACATCAAA ATTTTGGGTC CATATTGTGT CAATGAACGA GAACAAGGTT
CATTGGGGAG GCTTGATTCA ACAAAGTCAT GGACTAAGTG GGGATTTTAA TTCTGAGTTT GGTAATCATT ACTGTCAATA
TTTTGATATC AGACAGCCCT GGAATATGGG ACCACTTGCG ATGGTTGGAA GAGAAGCCAC AGATCAGTTG CCAAACATAG
GCCATGTCAA ATCATCTGGC ACCATTATCA GCCGTTTTGA GTCACCAGCT TCTGCCTTTT ATGCTGCCGA AAACTGCATG
GGATTTGCAG AATATGATTG CCAACTTGGT GTTCAATCTC AGTTATGCAA GATTAATGAC TCGGAATTCC CTTTGTATCA
ATCTCCCAGG GACAACCTTT TCTTGGACTC AGCAAACCAA CCTGACTTAA GCTATGATTT TTCAAACACT TTGCAGTCCA
TAGTGAAATC TCAATTCAAT AATGATCAAT GTCGTGTATC CCCTGAAAAG TTCAATAAAA TTTCATGTGG GAATTTTCCC
ACCACCAAGT TCCTTCCAAT TGAACAACAG AAGTTGTTCA TTGATGGTGT CATCAGGGGC TCCTCATTTC CTAACAAAGG
AATTCAGGAT CGCACGGTTG CTCGTGGATC TTTTGATTTA CCTGTTGCAC ATATGAGATT TTCTTCTCAG ATCGAGAAGT
TATCTCCAAC ACTTTCAGCA GGAAGTGTGT CAACTGTTGG AAACTCTGCT TCTAATGGGG CAGCAGTCTC AAGCAAAACA
CGTATAAGAT GGACTAAGGA TCTTCATGAG AAGTTTGTTG AGTGTGTGAA TCGCCTTGGA GGCTCTGAGC AGGCAACACC
AAAAGCTATA TTAAAGATGA TGGACACAGA TGGTTTGACT ATCTTCCATG TCAAAAGTCA TCTGCAGAAA TATAGAATTG
CAAAATTCAT TCCAGAGCCT AGTCAAGGGA AATCAGACAA AAGAAGCCAC ATAAAAAATG TGCATCATCT TGATGTCAAA
ACAGGCTTAC AAATTAGAGA GGCACTTAAG CTTCAATTAG ATGCTCAAAG GTGTCTTCAC GAACAACTAG AGGTTCAGAG
AAAATTGCAG CTGAGAATTG AGGAACAAGG AAGGCAACTA AAAAAAATGT TTGACCAGCA GCAAAAGACA AGTAATAACC
TCTCAAATAC TCAAGATTCA GGCACTGATG AGACAACAAT TACTCATAAA GATGGTGAAG TTTCTGTTTC TGAAGGAGCC
AACAATTCCT TCTTCACTTC CCAAGCCTCT CCAAGCCTAT AATCTGATAT GGTTATGTAT AAAATTACAG TTTTCTGCAT
GCTTACATCC TGTGATTTTG TTATAGCATT GTTGTTTATC CTACATATGC AAACTCTATA TGAATTAGTA CATAATTTAG
AGTGCTTACA TTATATATTC TATAGAAACA AACAAGTAGC ATTGCTTTAC TAGGGGAGGA GGGAATAAAC TTTGTAAGCA
GAGTCTTATG TGTTTTTTCA GCAAGAAGCC ATTGTTTTGC TC

>Vigan.04G286600.01
ATGAACGAGA ACAAGGTTCA TTGGGGAGGC TTGATTCAAC AAAGTCATGG ACTAAGTGGG GATTTTAATT CTGAGTTTGG
TAATCATTAC TGTCAATATT TTGATATCAG ACAGCCCTGG AATATGGGAC CACTTGCGAT GGTTGGAAGA GAAGCCACAG
ATCAGTTGCC AAACATAGGC CATGTCAAAT CATCTGGCAC CATTATCAGC CGTTTTGAGT CACCAGCTTC TGCCTTTTAT
GCTGCCGAAA ACTGCATGGG ATTTGCAGAA TATGATTGCC AACTTGGTGT TCAATCTCAG TTATGCAAGA TTAATGACTC
GGAATTCCCT TTGTATCAAT CTCCCAGGGA CAACCTTTTC TTGGACTCAG CAAACCAACC TGACTTAAGC TATGATTTTT
CAAACACTTT GCAGTCCATA GTGAAATCTC AATTCAATAA TGATCAATGT CGTGTATCCC CTGAAAAGTT CAATAAAATT
TCATGTGGGA ATTTTCCCAC CACCAAGTTC CTTCCAATTG AACAACAGAA GTTGTTCATT GATGGTGTCA TCAGGGGCTC
CTCATTTCCT AACAAAGGAA TTCAGGATCG CACGGTTGCT CGTGGATCTT TTGATTTACC TGTTGCACAT ATGAGATTTT
CTTCTCAGAT CGAGAAGTTA TCTCCAACAC TTTCAGCAGG AAGTGTGTCA ACTGTTGGAA ACTCTGCTTC TAATGGGGCA
GCAGTCTCAA GCAAAACACG TATAAGATGG ACTAAGGATC TTCATGAGAA GTTTGTTGAG TGTGTGAATC GCCTTGGAGG
CTCTGAGCAG GCAACACCAA AAGCTATATT AAAGATGATG GACACAGATG GTTTGACTAT CTTCCATGTC AAAAGTCATC
TGCAGAAATA TAGAATTGCA AAATTCATTC CAGAGCCTAG TCAAGGGAAA TCAGACAAAA GAAGCCACAT AAAAAATGTG
CATCATCTTG ATGTCAAAAC AGGCTTACAA ATTAGAGAGG CACTTAAGCT TCAATTAGAT GCTCAAAGGT GTCTTCACGA
ACAACTAGAG GTTCAGAGAA AATTGCAGCT GAGAATTGAG GAACAAGGAA GGCAACTAAA AAAAATGTTT GACCAGCAGC
AAAAGACAAG TAATAACCTC TCAAATACTC AAGATTCAGG CACTGATGAG ACAACAATTA CTCATAAAGA TGGTGAAGTT
TCTGTTTCTG AAGGAGCCAA CAATTCCTTC TTCACTTCCC AAGCCTCTCC AAGCCTATAA 

>Vigan.04G286600.01
MNENKVHWGG LIQQSHGLSG DFNSEFGNHY CQYFDIRQPW NMGPLAMVGR EATDQLPNIG HVKSSGTIIS RFESPASAFY
AAENCMGFAE YDCQLGVQSQ LCKINDSEFP LYQSPRDNLF LDSANQPDLS YDFSNTLQSI VKSQFNNDQC RVSPEKFNKI
SCGNFPTTKF LPIEQQKLFI DGVIRGSSFP NKGIQDRTVA RGSFDLPVAH MRFSSQIEKL SPTLSAGSVS TVGNSASNGA
AVSSKTRIRW TKDLHEKFVE CVNRLGGSEQ ATPKAILKMM DTDGLTIFHV KSHLQKYRIA KFIPEPSQGK SDKRSHIKNV
HHLDVKTGLQ IREALKLQLD AQRCLHEQLE VQRKLQLRIE EQGRQLKKMF DQQQKTSNNL SNTQDSGTDE TTITHKDGEV
SVSEGANNSF FTSQASPSL*