GBrowse Details

Vigan.04G284600.01

Basic Information:
Name: Vigan.04G284600.01
Multiple alignment
Variant Information
Position: Chr04:40719685..40721363 (+ strand)
Length: 1679
Functional Information:
Description: Similar to Uncharacterized protein. [V7CVT9, Phaseolus vulgaris]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Cellular Component: small ribosomal subunit (GO:0015935)
Molecular Function: RNA binding (GO:0003723)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein S10 (IPR001848)
Ribosomal protein S10, eukaryotic/archaeal (IPR005729)
Ribosomal protein S10, conserved site (IPR018268)
Ribosomal protein S10 domain (IPR027486)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:213.66,326.38,196.29,106.51,283.59,5 74.37,273.67,131.75
Arabidopsis thaliana homolog: AT3G47370.2
Automatic updates:
Name: NM_001248629 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306473 (LOC100306473), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248629 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 40S ribosomal protein S20 (LOC100306473), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001349785 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 40S ribosomal protein S20-2 (LOC100500017), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:40719685..40719706 (+ strand)
Length: 22
Type: five_prime_UTR
Position: Chr04:40719707..40719818 (+ strand)
Length: 112
Type: CDS
Position: Chr04:40719902..40720015 (+ strand)
Length: 114
Type: CDS
Position: Chr04:40720973..40721115 (+ strand)
Length: 143
Type: CDS
Position: Chr04:40721116..40721363 (+ strand)
Length: 248
Type: three_prime_UTR

>Vigan.04G284600.01 class=Sequence position=Chr04:40719685..40721363 (+ strand)
TTCTCTTCCC TGGGTGTGAA CAATGGCATA CGCTGCGATG AAACCCACCA AGCCCGGCTT GGAGGAATCT CAGGAACAGA
TTCACAAGAT AAGGATCACC CTATCTTCCA AGCACGTCAA AAATCTCGAG AAGGGTATGC ATCAATTCAT TCAACTTCTC
CTTTTTGTGC TTCCTGCAAT CCTTAGGCTT ATGTTTCAAC TTTGATGTTA CTTTTAGTTT GTTCGGACTT GGTTCGCGGT
GCAAAGGACA AGCGCCTCAG GGTCAAGGGA CCAGTTAGGA TGCCAACTAA GGTTCTTCAC ATCACTACAA GGAAATCCCC
TTGCGGTGAA GGTATTTTAT CTTTTTTCAT TCTTTTATTA TTTTTATCGT GTTTCACTTT TATTTTTATT ATATGATTCT
TATATTGCTG CTTTCATGTT TGCTCTGCAA TTTGGTTTGT GCTTCGATCT TGCTTTGATA CTAGCTGTAA TTTTAAATAT
GGTTGGCCTT TAGCATTTGA CAAGTCATGA TGATTGGAAG TAGTGACTAA TTAACTGGCT GATGCAAAAA AATGGTGTTA
AATTGGATTA AATTGTAATA CAGTACAAGT GTATATCAAT CATCCTATAT GGAGAAAAGT ATTAGTTGTA AAGGTGCATT
CCTTGAGATC TTGGACTTCT CAACCCTTCT GCGTTTGGAT GATGGAGGAT AATGAAGGGA AAGGGAACGG AATTTTATGA
TTTTTTTTTT GTAATTAAGA CCATGTTACT GTGTTTGTTG AAAAATGAAT AAGGGGTGGT TGAAATGTTT CTTTCGAAAA
AATATTAAGT TTGAGATGAA AGGACACAGA GGCAAACCAA ATTCCAGTAA TTTAGGTCCT TAAGTCAGAA AGTTCTTCAA
TCAATTGTGA TGCTGTATGA TAAACATACT GTCCTATGCA AAGGCGCCGG TTTGATTGTT TTGTCATTTG TTATCTTGCA
ATTGATAATG TGATTGTACG CGTGGTCTTC TTTTGCAGCC CGAAACTGAC TTCTGTTGGG GTAAAAGCTT TTTATGTAGT
GTTTTCTTGG CTTATATTGT TTTTTTTTTA ATTTCATGCG GTTCACGTGT TGCTTAGCCT GGTGATTTTG ATTTTGAAGT
ATTGTGTCCA GTTTTCACGT GCTTTTGGAA CAGTGATACT GATGTGTTGT TTAGCCTGGT GATTTTTATT TTGGAGTATT
GTGTCCAGTG TTTGTACTTT CGGAATGTTG TTTATTGATG AATGAGATAT ACTGTCCCTT GTGTTCATGA CACTGCTACA
TGTTTTAGGT ACCAACACAT GGGACAGATT TGAACTCCGT GTGCACAAGA GAGTCATTGA CCTTTACAGT TCCCCAGATG
TTGTAAAGCA GATTACCTCG ATCACAATTG AACCTGGTGT GGAGGTTGAG GTGACCATTG CAGACGCCTG ATCTTAATCC
AAATTTTAAT TGTTATGCTT CCTAGTTATT TCTCCATTAT TATTCTGTAT TTCTAAGTTT TGATAACCTG ACTGAGTTGG
TTTGTTTTAT CTAGTTTTAC GGTTGTAGAC ATTGATGAAA TACCAGAGAA ATGTTATCTG AAGAAATTCC AGAAACTATT
ATTATATAGT TGTTTTGAAA TTATTAAAAA ACACTTTTTT TCTGCCCTCA GTTATCATCA TTATGTCTTC ATTTTGTTA

>Vigan.04G284600.01
TTCTCTTCCC TGGGTGTGAA CAATGGCATA CGCTGCGATG AAACCCACCA AGCCCGGCTT GGAGGAATCT CAGGAACAGA
TTCACAAGAT AAGGATCACC CTATCTTCCA AGCACGTCAA AAATCTCGAG AAGGTTTGTT CGGACTTGGT TCGCGGTGCA
AAGGACAAGC GCCTCAGGGT CAAGGGACCA GTTAGGATGC CAACTAAGGT TCTTCACATC ACTACAAGGA AATCCCCTTG
CGGTGAAGGT ACCAACACAT GGGACAGATT TGAACTCCGT GTGCACAAGA GAGTCATTGA CCTTTACAGT TCCCCAGATG
TTGTAAAGCA GATTACCTCG ATCACAATTG AACCTGGTGT GGAGGTTGAG GTGACCATTG CAGACGCCTG ATCTTAATCC
AAATTTTAAT TGTTATGCTT CCTAGTTATT TCTCCATTAT TATTCTGTAT TTCTAAGTTT TGATAACCTG ACTGAGTTGG
TTTGTTTTAT CTAGTTTTAC GGTTGTAGAC ATTGATGAAA TACCAGAGAA ATGTTATCTG AAGAAATTCC AGAAACTATT
ATTATATAGT TGTTTTGAAA TTATTAAAAA ACACTTTTTT TCTGCCCTCA GTTATCATCA TTATGTCTTC ATTTTGTTA

>Vigan.04G284600.01
ATGGCATACG CTGCGATGAA ACCCACCAAG CCCGGCTTGG AGGAATCTCA GGAACAGATT CACAAGATAA GGATCACCCT
ATCTTCCAAG CACGTCAAAA ATCTCGAGAA GGTTTGTTCG GACTTGGTTC GCGGTGCAAA GGACAAGCGC CTCAGGGTCA
AGGGACCAGT TAGGATGCCA ACTAAGGTTC TTCACATCAC TACAAGGAAA TCCCCTTGCG GTGAAGGTAC CAACACATGG
GACAGATTTG AACTCCGTGT GCACAAGAGA GTCATTGACC TTTACAGTTC CCCAGATGTT GTAAAGCAGA TTACCTCGAT
CACAATTGAA CCTGGTGTGG AGGTTGAGGT GACCATTGCA GACGCCTGA

>Vigan.04G284600.01
MAYAAMKPTK PGLEESQEQI HKIRITLSSK HVKNLEKVCS DLVRGAKDKR LRVKGPVRMP TKVLHITTRK SPCGEGTNTW
DRFELRVHKR VIDLYSSPDV VKQITSITIE PGVEVEVTIA DA*