GBrowse Details

Vigan.04G279600.01

Basic Information:
Name: Vigan.04G279600.01
Multiple alignment
Variant Information
Position: Chr04:40158600..40160489 (- strand)
Length: 1890
Functional Information:
Description: Similar to Uncharacterized protein. [I1N915, Glycine max]
GO: Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Zinc finger, AN1-type (IPR000058)
Zinc finger, C2H2 (IPR007087)
Zinc finger, C2H2-like (IPR015880)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.08,0.02,0.60,0.11,0.98,0.00,3.85,0.90
Automatic updates:
Name: NM_001253025 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like (LOC100806459), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:40158600..40158831 (- strand)
Length: 232
Type: three_prime_UTR
Position: Chr04:40158832..40159605 (- strand)
Length: 774
Type: CDS
Position: Chr04:40160188..40160286 (- strand)
Length: 99
Type: CDS
Position: Chr04:40160287..40160489 (- strand)
Length: 203
Type: five_prime_UTR

>Vigan.04G279600.01 class=Sequence position=Chr04:40158600..40160489 (- strand)
ATTCCCTCCT TTTCCTGGAT TTCTGGTTAA CTCTGTCATC TCTTTCTTTC CACGCTATAT CCTCTCAATT CAACCCAAAA
AAACATTCTC TCTCAAAATT CATATTCGAT TTTCAATTTG TGAAGGGAAG GAGAGAGGGG GAGAGAGGGA GAGAGGGAGA
GAATTCGTTT TCTCTCCTCT GCGTTGGGTA AAGCTTAATT TGGATGGGGA CTCCGGAATT TCCAAATCTC GGCAACCATT
GTTCTGTTTC CGATTGCAGG CAGCTTGATT TCTTGCCCTT CACATGCGAT CGCTGTGATC AGGTTTTTCA TTTCTCTCTC
TCTCTCTCTC TTTTATTTTT TATTAATTTA TATGCTTATA TTCTATCTAT TTCATCATTA CATTGCATAG TTATATGATT
GCATTGAATC ATTTATATTT CCGCGTTTTT ACCTGTCAAA TTTCAGTTTC AAATTTTCGC ATGAATGAAA GGAACATAAT
TAGAAGATCT AGTAATGGTG TTTCTAATGC TTATTCTCTA TAGAAATTTA TCTTATCATT AATAAAGATG ATTTTGTTTT
GTATCGTGAC TCAAAATCAA GCAACTGGTA GAATTGTGGA TTTCTATTCT TCTGGTTTAC AATTACACTT TCACTTCTTC
TCTTCAATTT CCTCAATTTT TTGTGAATTT CTTTGTTTCT TTTTTGTGTG TATTTGATCC TATCGCTCTG AGGGTCTTGG
TGAGTAAAGG CATTGATTAG GAGATTTATA AATATAAAAA TTTTATTGTC AGATAAATTT TTTTGTGTTA CTTGAAAAGA
ATGCAAAATT GAAAAGAATG CAATAAAACT TATAACAATT TATGAACTCT TTGGTTGAGC TAACACATAC ACAATTTCTT
GCAGATATAT TGTTTGGAGC ACCGAGGTTA TATTGAGCAC AAGTGCACAA AGCCCAACAA AGAAGATGTC AAAGTTGTCA
TATGTCCCCT TTGCGCAAAA GGAGTTCGCC TCATTCCAGA TCAAGATCCC AACATAGCTT GGGACCATCA TGTTAACATT
GATTGTGATC CGTCAAATTA CCAAAAGGTG ACAAAGAAGA GAAAATGCCC TGCCCCTGGA TGCAGAGAGG TATTGGTATT
CTCCAACACA ATCAAGTGCA GGGATTGCCT GGAAGACCAT TGCTTGAAGC ACCGGTTTGG CCCTGATCAC AAATGTTCTG
GTCCCAAAAA GTTAGAGAAA AGTTTTTCAT TCATGAGTTT ATTTAATACG ATTAAAAAAG AGGAGCCAAA GCCCAATTTA
ACTTCGACAG CATCATCTAA GTGGACTTCA AGCTTTCTCA GCGTGGCTTC TAACATTCGT GCCTCAGCTG AAGCGAGCAT
GTCAAAATTG AGCAATGAAA TTAACCAAGT TTGGCTGGCA GCAAGGGATA GTGCGGGACC GAACAGTGGC AGTGGAAATA
AAAATGACCT TCAAGAGGAA TCTTGCCCTC AATGTGGTGT AAAGTTTTCC TCTGCGATTT CTTTGGTGGA TCATGTGCAA
CAAGTTCATG AAAGCAATGG GAAACCAGTA GGGGTTAAGA AGATTGAGGC ATGCCCCAAG TGTAGTGGAG GGTTTGTTGA
CCCGGTATCC CTAGTGGAGC ATGTTGAGAG AGATCATGGT GGTGGTTCTG GAGCATAGAA AATTCAAGTT TTTTAATGAA
TTTTCTTTTT ATACGTATTA TTCAATCACC ATTTTGTTCT GTTTTATAGC AGAAGAATGT GAATACTAAT TTGAAAATGA
GGCTAGATTT GTTCCCAATG GTCTTGTAGT TATGTCATTA TTTAATGTCT AGATCACGAT GTCATTTCTT CGAACATTAT
ACCTTCATGT TTAGAATCAA TCGAATGGCT TCGTTTCGGC CTGTTTCCTG 

>Vigan.04G279600.01
ATTCCCTCCT TTTCCTGGAT TTCTGGTTAA CTCTGTCATC TCTTTCTTTC CACGCTATAT CCTCTCAATT CAACCCAAAA
AAACATTCTC TCTCAAAATT CATATTCGAT TTTCAATTTG TGAAGGGAAG GAGAGAGGGG GAGAGAGGGA GAGAGGGAGA
GAATTCGTTT TCTCTCCTCT GCGTTGGGTA AAGCTTAATT TGGATGGGGA CTCCGGAATT TCCAAATCTC GGCAACCATT
GTTCTGTTTC CGATTGCAGG CAGCTTGATT TCTTGCCCTT CACATGCGAT CGCTGTGATC AGATATATTG TTTGGAGCAC
CGAGGTTATA TTGAGCACAA GTGCACAAAG CCCAACAAAG AAGATGTCAA AGTTGTCATA TGTCCCCTTT GCGCAAAAGG
AGTTCGCCTC ATTCCAGATC AAGATCCCAA CATAGCTTGG GACCATCATG TTAACATTGA TTGTGATCCG TCAAATTACC
AAAAGGTGAC AAAGAAGAGA AAATGCCCTG CCCCTGGATG CAGAGAGGTA TTGGTATTCT CCAACACAAT CAAGTGCAGG
GATTGCCTGG AAGACCATTG CTTGAAGCAC CGGTTTGGCC CTGATCACAA ATGTTCTGGT CCCAAAAAGT TAGAGAAAAG
TTTTTCATTC ATGAGTTTAT TTAATACGAT TAAAAAAGAG GAGCCAAAGC CCAATTTAAC TTCGACAGCA TCATCTAAGT
GGACTTCAAG CTTTCTCAGC GTGGCTTCTA ACATTCGTGC CTCAGCTGAA GCGAGCATGT CAAAATTGAG CAATGAAATT
AACCAAGTTT GGCTGGCAGC AAGGGATAGT GCGGGACCGA ACAGTGGCAG TGGAAATAAA AATGACCTTC AAGAGGAATC
TTGCCCTCAA TGTGGTGTAA AGTTTTCCTC TGCGATTTCT TTGGTGGATC ATGTGCAACA AGTTCATGAA AGCAATGGGA
AACCAGTAGG GGTTAAGAAG ATTGAGGCAT GCCCCAAGTG TAGTGGAGGG TTTGTTGACC CGGTATCCCT AGTGGAGCAT
GTTGAGAGAG ATCATGGTGG TGGTTCTGGA GCATAGAAAA TTCAAGTTTT TTAATGAATT TTCTTTTTAT ACGTATTATT
CAATCACCAT TTTGTTCTGT TTTATAGCAG AAGAATGTGA ATACTAATTT GAAAATGAGG CTAGATTTGT TCCCAATGGT
CTTGTAGTTA TGTCATTATT TAATGTCTAG ATCACGATGT CATTTCTTCG AACATTATAC CTTCATGTTT AGAATCAATC
GAATGGCTTC GTTTCGGCCT GTTTCCTG

>Vigan.04G279600.01
ATGGGGACTC CGGAATTTCC AAATCTCGGC AACCATTGTT CTGTTTCCGA TTGCAGGCAG CTTGATTTCT TGCCCTTCAC
ATGCGATCGC TGTGATCAGA TATATTGTTT GGAGCACCGA GGTTATATTG AGCACAAGTG CACAAAGCCC AACAAAGAAG
ATGTCAAAGT TGTCATATGT CCCCTTTGCG CAAAAGGAGT TCGCCTCATT CCAGATCAAG ATCCCAACAT AGCTTGGGAC
CATCATGTTA ACATTGATTG TGATCCGTCA AATTACCAAA AGGTGACAAA GAAGAGAAAA TGCCCTGCCC CTGGATGCAG
AGAGGTATTG GTATTCTCCA ACACAATCAA GTGCAGGGAT TGCCTGGAAG ACCATTGCTT GAAGCACCGG TTTGGCCCTG
ATCACAAATG TTCTGGTCCC AAAAAGTTAG AGAAAAGTTT TTCATTCATG AGTTTATTTA ATACGATTAA AAAAGAGGAG
CCAAAGCCCA ATTTAACTTC GACAGCATCA TCTAAGTGGA CTTCAAGCTT TCTCAGCGTG GCTTCTAACA TTCGTGCCTC
AGCTGAAGCG AGCATGTCAA AATTGAGCAA TGAAATTAAC CAAGTTTGGC TGGCAGCAAG GGATAGTGCG GGACCGAACA
GTGGCAGTGG AAATAAAAAT GACCTTCAAG AGGAATCTTG CCCTCAATGT GGTGTAAAGT TTTCCTCTGC GATTTCTTTG
GTGGATCATG TGCAACAAGT TCATGAAAGC AATGGGAAAC CAGTAGGGGT TAAGAAGATT GAGGCATGCC CCAAGTGTAG
TGGAGGGTTT GTTGACCCGG TATCCCTAGT GGAGCATGTT GAGAGAGATC ATGGTGGTGG TTCTGGAGCA TAG

>Vigan.04G279600.01
MGTPEFPNLG NHCSVSDCRQ LDFLPFTCDR CDQIYCLEHR GYIEHKCTKP NKEDVKVVIC PLCAKGVRLI PDQDPNIAWD
HHVNIDCDPS NYQKVTKKRK CPAPGCREVL VFSNTIKCRD CLEDHCLKHR FGPDHKCSGP KKLEKSFSFM SLFNTIKKEE
PKPNLTSTAS SKWTSSFLSV ASNIRASAEA SMSKLSNEIN QVWLAARDSA GPNSGSGNKN DLQEESCPQC GVKFSSAISL
VDHVQQVHES NGKPVGVKKI EACPKCSGGF VDPVSLVEHV ERDHGGGSGA *