GBrowse Details

Vigan.04G273000.01

Basic Information:
Name: Vigan.04G273000.01
Multiple alignment
Variant Information
Position: Chr04:39250827..39256523 (+ strand)
Length: 5697
Functional Information:
Description: Similar to Transmembrane proteins 14C, putative isoform 1. [XP_007032574.1, Theobroma cacao]
GO: Cellular Component: membrane (GO:0016020)
InterPro: Uncharacterised protein family UPF0136, Transmembrane (IPR005349)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:46.12,19.35,39.89,47.14,66.43,61.73,29.60,33.26
Arabidopsis thaliana homolog: AT3G57280.1
Automatic updates:
Name: NM_001253267 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100796521 (LOC100796521), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:39250827..39250964 (+ strand)
Length: 138
Type: five_prime_UTR
Position: Chr04:39250965..39251081 (+ strand)
Length: 117
Type: CDS
Position: Chr04:39252268..39252508 (+ strand)
Length: 241
Type: CDS
Position: Chr04:39255131..39255298 (+ strand)
Length: 168
Type: CDS
Position: Chr04:39255429..39255475 (+ strand)
Length: 47
Type: CDS
Position: Chr04:39255557..39255597 (+ strand)
Length: 41
Type: CDS
Position: Chr04:39256054..39256144 (+ strand)
Length: 91
Type: CDS
Position: Chr04:39256145..39256523 (+ strand)
Length: 379
Type: three_prime_UTR

>Vigan.04G273000.01 class=Sequence position=Chr04:39250827..39256523 (+ strand)
CAAAAAGTTA TTTTGGTATC TAAATTTATA GAGCCAAAGG CTCATGGGTA GGTGGCGGAT CGTTGACTGG TCTGTTTTTC
ACTCTCTTTT CCATAAAATC TTGTTTGTGT TCTGCACCGA ACCAACTCGA AGGCAGTGAT GAATGCAAAC ATGGCCGCGG
CTACCACGAT TTCTCAGCTC GGATGCTTCT CCGCCGTCCA CCGTAGCATA CACCTCCGCA GCCGCTCGCT TCTATTTCCT
TCTCCTCGCT CCAAGGTCTT TCTCCTCTTT CTCATTTCCA AATAGTTTAT TGCCACCGTC ACTGTAACTT GGTAGGGTTC
GTGGTAAGAA AAATTGCATG CATCAGGCTC GCGAATGTAC TAGGTATTGT GTAGATCTAA AGCGCCGCTT GCTAAATCAC
ACGTTACCAA GGGAAGTTTG AAGTAGCTGT CGTTGCAAAA AATTAAAGGA ACTCTAACGT CGACGACTTA GAGTCCAGAG
TGACGTTGTC TTAGAATCAC AATTTTAGGT TCTTATTATG GATTGACTAA CTTTTAATGC GTGTTTGAAC TAATTGGTTT
CTCTTAGGGA AAAAAATGTT ATCGTGTTTT GTTTGCGGCT TCTCGGTGGT TGTTTTAATG ATTACTGCTT AACCAGTCTT
TTTCTAACAT GATTTCGTGT TGAATATGGT GCTTTATGTT CATAAATTTG GTTTTCTGAT TTTGTTGGTT TCAGTCACAG
GAATTTTTTA ATTTGTATTA CTTACAAATC AGATTACTAG AAGAAGAGAA GAAGCATTAA CATAAATCCA TTATATTTTG
GGATTCGGTA GAAAAAAGAA AGCAGTATGT TGTTATCATA AGCAATATAT TTTTAATCAC CGGAAATTTT GGAAATTTTG
GAAATTTTGT GACGAGTTTC TTTCACATTA TGTGATTTTT ATTATTTTTT AATATGGATG TATGACAGTT ATAACTCTGT
GTGTCCCATT CCATCATATC TATCATTCAC GTTCCTCTTG TGACTTGTTT CCTTTTGGGG TATCACTCAG CCCTTCTATG
CCTTGCTTCC CTTCTACTAT TGACTTTGTT GCTGCAATGC ACACATAATC TACATCTTTC AGATTTTGGC GCCCATTACT
ACATATATAT GCTTGTATTG GTTTATGAAA TTGTAGTGAG AATACCCAAA TTAAAAGGCA TATAGCAGAG TACTGGGAGT
CAATATGATC AAGTATTCAA GTTGGCCTTG TTGATGATTT GATAGATTGG CACGTTTCTC CACATTTAGG GAAAGTCATA
TTAAGTCTAT GTGCATGCAT ATATCTTTAC TTTGATATTG CAACCGTAGT GCTAGACAAT ATGGACAGGC TTGAATAACT
GCATAAATAA TATTTTTGTT AAATAGTTTT CTAGAGCAAT TATTTGACAT TGATACTGAA CTGGAAGCAT ATCTCATTTA
GTTATCAGTT GTTATGAGTC TGGAGAGGCA TGACACAGAT ACTGCTGGGA CTGATACCAA AAATACACTG AGTTATGCAG
CTGATGTGTC AAAGCTACAT GTTGAAGAAA AGCAGAACTC GTATTCAACA AAAGAGGACC ATGATACTGA AAAAACAGGG
GTTGGACAGG AAATACAAGG AAGTGTTGAT CAACCGAAAA AGACTGCAAA AATCCATGAC TTCTGTTTAG GCATTCCCTT
TGGTAAGTGT TTCCTTGTGT AGATTATTTG CACATTAGTT AAGTTATATG ATGCATTTCC CATACTCTGC TTGTTTGGAG
GGAAATGGAG GGGTCGAGAT TATTAGTTTT TTTTTTTTTA ATTTTATCCT ATTTGATTCA GAAATGAAAA GTAGAAGAAA
TGGGAGAGCT AAAATCCCTC TCTGCCTACC TTCAATATTG GGGAGGGGGA TGTTTGGAGG AGAGGGAAGC TAAATTATAG
TTTTTGGACT GTGTAGAATG AATTATCTCA ATTTATTTAC TTCTCATCTC CACCATTACT GTTTATTAGG GTCTGACAGT
ATTTTCTCTC CCCCTCTCTT GCAAACAAAA TAAGGTGATC ATTCCCTCCC CTCCCCTACT TTGAACAAAA TACATTATTA
GTGTGGGTGA CGGTGTTTGG TTTAATTGCT CTTTTATCCC CTTCAATTGT CAATCTAAAC AAAAAGAGAA AAAAGTGACT
GGATTGTTGT TGACAAGTTA AGTCTGGCAT ACACTGTTTA TTTTTGTTCC CTGAAAATTT TTCAGTAGTT GATAGCACCG
TGTCTACGGC AAAAATCAGG AGCAATTTCT GACCTTTGCT TGACAAGAAC ACTGGTGCAG CATGTGCTTA TTATTATGCA
GCAGGTGCAG CTGCTTTTTG CCGCGAGATT GCCATTCTAT TTTCTTTTTA TTTTTTAATC CTTTTTATTT TTTAAGCCAT
TTCAATTAAA TTCCCTTATA AATTGATCAG TTACATTTTC CTATTGTAAA GGTTAACAAA AATGCCCCTT GTAATGTTTC
TTTCTTCCTC TCTTTTTTTC TGAAGTGTAA CACTTTTGAG TCTCCCCTGT TAAGTCCCCC TTTTGTACGA TAATGTGTGA
ACGTGAAGAG TTTTGTTCCC TTTTTTCAAT ATTCATGTGT GTGATATATT ATTTTTAAAT ATACATATTG TTTTCCAAAC
TTCGCAATAG AGGCCATCCT GCCATTTGAG ATCCCAACTA TAGTGTTTTG CGGGGGTCAC AGTTCCATGC TGCTATCAAA
GATTAACTAC TTAGGTTGAA TTTGATGGAA GATGTTAGAT TATCCCGTTT ATTAGGTCTG GTCTAGGTAA GTTGAAATTA
AAGCTCGTTC AAAGGAGATA GAAAACGATT ATACCTTCTG TTCATGTTTC AGAGAGTGTA GTACACTAGG TGAAAGATAT
TTGAATATAG TGAATTGATT TATGTTAGGA CATCACTCAG AATGATTGTC TGGGAAGCTC TGAACAGTGC CTATGTCAAC
TAACTATTGG CTTCTCATCA TTGCTAAGCT CACTTCATCA ATGAGCTAAA GCAGCTCAAG TTGGTTTCCA AATCCCTATT
TAAGACTTGG TTTGACCATC TGAATCAGGA TGATGAGAGA GCTCGTCTAA CTAATGTCCC TCAACTTAAA CAATTCTTTC
TAAGAATAGC TAATGAAAAA GGAATCAGTC TCTAACCACC AATTTTTTAA TACCGTTTAG CCTTATTGCA TATCTTTAGA
ATAACTCAGT GACTGTCTTG TCCATACCAG GAGGCTTAAG CAACCAAAAA AGAGCTATAT TGTAACTAAA CCCCTATAAT
CAACGCAAAT AGGTTGTATA AGCCTCTAAT ATTATGTAAA CCCAAGAAAT CTGTGTCTGC TGGAATCTCG AGTCTATGAG
TCCAGCACGT GTAGCCTCAT AATTGTTCTT TTCACAGACA TCACAGGACC TCACAAAGTC CTGGACATCT CCCTGGCCAA
CCCTAAAGAG ATAGCAGTAG AACAGGTTTG ACTTTCCCTG TCCTCTCTCC AACCAAGGCC AGTCATTTTC TTCTAGAATT
ATCAATTTAA ACTGTTTATT AGTACAGGTA AGTAGAGGGT GGAATTTCTC ACCACAATGA AAGCAAATGC CTTTTTTCAC
TGAATGAACT CAAGGTAAAA GAGATGATGA AACCGTTTTC TCTTTTCAGT TGATGCTCTC CAATGTTGGC ATACCAATCA
CAAGGATAAA GCAAAAAGAG AGAGACGAGC AAAGATTAGG AAGAAAAATT GGAAGTACTG TACTACGTAA GAGCTTGGGA
AGAAAACCAG AGCTTAAGGC CCCTTCAGAG ATTGTATCTC TGCCACAAAA TTAGAAGTCT CCGATCAACC CTACATGCCG
GCAGCTTCTT TCAAGTTTTA ACTAACTGGT CATATCTCAA CAGTGTCAAT CCAACTATTG CCAGCTCAAC TTACGCCTGC
TAACTAACTT GCTTCTTGAT GTCCGTTCTT CTCTTGTATT TGTATCTAGA CCCTTGTTCC ATCTCTTCTA TTGTTCACCA
ACCGATACTT GTTATTCATC TGAACCTTAG GTCCAAAAAT TGACCTCCAT ATAGGCTTTA TGAAGTTTAG TATTACCTAG
ATTATGACTT ATTAAACTTT TTGCACCTAC CTGGCAGTTT AAACGGAACG CTATTCTGAA CTGGATATAT TATTTGTGGT
TGATTTCTTT GTGACCCGTG GCATAAAAAA TATAGAGGTG TGGTACATTA TTTCGGTACT AAAAGAAAAC ATATATCCTA
CTCTATTAGG AAATCATTTC TTCCCCTTAA AGATGTTATA TCCCATCTTT ATCTTTTGTT TTAGGTGGTT TTGTTTTAAC
TGGAGGGATT GTTGGGTTCC TTTTTTCACG GAGTCCTGCA ACACTGAGCA GTGGTGTGCT CTTTGGTGGT GCTTTACTGT
TCCTCAGTAC CCTTAGCTTG AAGGTCTGGA GGCAAGGAAA ATCGAGCTTA CCATTTATTC TAGGACAAGC AGGTATGTGA
TTTAAGCAGT AGTAATATAG TGATGGTCTT GGAAGAAAAA GAAAGAAGCT AAAAAAGGCT GCAGCCCGAT CTTATTTGGA
TAATTGTTAT ATACTCTCTT GACTTGTTTC GGTATCTTGC AGCATTGTCA GGGATTCTTA TCTGGAAGAA CTTCCAGAGT
TACTCATTGG TAGTACATCT ATTTTTGTAA AACTGTTCTT GTGTTGTCTC ATTTAATTGC TATACTTATT TGCTTTGCTG
GATGATGCAG GCAAAGAAAA TATTTCCAAC TGGTTTTAGT GCTATTATAA GGTATCTCAA TCCATTACTT TTTATCCTAT
TTAGTTGGGT TAAATATGTT TTTTCGTTTT CAAACTATTT TCAAAAATGG TGTTCTGTCC CTAAATGAAA TTTATATACT
TATTTCATCC GTTCATTTTA TAAAAGTCAT GTAAATTATC TTCTTCGGCA AACGATGAAG ATAATATTAT AGTTTATTGT
GGAACTTCAT TTGTTACAGA AAAACACTTC ACGTGCCGTT TGTTAAGAGG ATGTTTTACA TTATTTGCAT AGTCAAAATA
GTATATAATT TAGTTTAAGT ACGAAATACA TTTATTTAGA ATAATTTGAA ATGAAAATCA TATTTAACCC TATTTAGTTA
TATACTTTGT ATTTGAGATT GATAATTTTT TTTTTAGCCT CTTGGGTGTT TGATTGTCTC AATTTCGATC TGATTCATTT
ATGCTTCGAG ATTTTTTTTT TTCGCAGTTC TGCAATGCTC TGCTTTTATT TCTATGTGCT TATCTCTGGA GGAAATCCCC
CACCTAAGAA ATTGAAGCCA TCTTCCAGCA CTGCATGATG AGATAGTCAA GGTTATACTA GCTTATAAAA TATGGAGATA
TAATATCTTA TTTTTCTGTG AATTGAAAAT AAGGCTGTAA GCTAATTTGG CCTTGTTGCT TTCGAAAATA GATCAGCCAA
GAGGTACAAC TGTGATTATT GCATTAGATT CGTAGGGCTT TTGTGGAGTA TACACTAATA ATATAAAATT TGATGGAAAA
GATAATTTGT TTGTGCAACT ACGTAGTTTC GATACTTTGG TTATAGGGCA CGTGGAATGA ATAAATATCC TGTTATTATT
ATTTTGGTAT GATTGAGAAT GAATCTCGTG CCTTCTGCCC AATGTGTTTA GGATTAAAAG AAATTATTGA ACATAACTCG
AGGCCACAAT ATATGCT

>Vigan.04G273000.01
CAAAAAGTTA TTTTGGTATC TAAATTTATA GAGCCAAAGG CTCATGGGTA GGTGGCGGAT CGTTGACTGG TCTGTTTTTC
ACTCTCTTTT CCATAAAATC TTGTTTGTGT TCTGCACCGA ACCAACTCGA AGGCAGTGAT GAATGCAAAC ATGGCCGCGG
CTACCACGAT TTCTCAGCTC GGATGCTTCT CCGCCGTCCA CCGTAGCATA CACCTCCGCA GCCGCTCGCT TCTATTTCCT
TCTCCTCGCT CCAAGTTATC AGTTGTTATG AGTCTGGAGA GGCATGACAC AGATACTGCT GGGACTGATA CCAAAAATAC
ACTGAGTTAT GCAGCTGATG TGTCAAAGCT ACATGTTGAA GAAAAGCAGA ACTCGTATTC AACAAAAGAG GACCATGATA
CTGAAAAAAC AGGGGTTGGA CAGGAAATAC AAGGAAGTGT TGATCAACCG AAAAAGACTG CAAAAATCCA TGACTTCTGT
TTAGGCATTC CCTTTGGTGG TTTTGTTTTA ACTGGAGGGA TTGTTGGGTT CCTTTTTTCA CGGAGTCCTG CAACACTGAG
CAGTGGTGTG CTCTTTGGTG GTGCTTTACT GTTCCTCAGT ACCCTTAGCT TGAAGGTCTG GAGGCAAGGA AAATCGAGCT
TACCATTTAT TCTAGGACAA GCAGCATTGT CAGGGATTCT TATCTGGAAG AACTTCCAGA GTTACTCATT GGCAAAGAAA
ATATTTCCAA CTGGTTTTAG TGCTATTATA AGTTCTGCAA TGCTCTGCTT TTATTTCTAT GTGCTTATCT CTGGAGGAAA
TCCCCCACCT AAGAAATTGA AGCCATCTTC CAGCACTGCA TGATGAGATA GTCAAGGTTA TACTAGCTTA TAAAATATGG
AGATATAATA TCTTATTTTT CTGTGAATTG AAAATAAGGC TGTAAGCTAA TTTGGCCTTG TTGCTTTCGA AAATAGATCA
GCCAAGAGGT ACAACTGTGA TTATTGCATT AGATTCGTAG GGCTTTTGTG GAGTATACAC TAATAATATA AAATTTGATG
GAAAAGATAA TTTGTTTGTG CAACTACGTA GTTTCGATAC TTTGGTTATA GGGCACGTGG AATGAATAAA TATCCTGTTA
TTATTATTTT GGTATGATTG AGAATGAATC TCGTGCCTTC TGCCCAATGT GTTTAGGATT AAAAGAAATT ATTGAACATA
ACTCGAGGCC ACAATATATG CT

>Vigan.04G273000.01
ATGAATGCAA ACATGGCCGC GGCTACCACG ATTTCTCAGC TCGGATGCTT CTCCGCCGTC CACCGTAGCA TACACCTCCG
CAGCCGCTCG CTTCTATTTC CTTCTCCTCG CTCCAAGTTA TCAGTTGTTA TGAGTCTGGA GAGGCATGAC ACAGATACTG
CTGGGACTGA TACCAAAAAT ACACTGAGTT ATGCAGCTGA TGTGTCAAAG CTACATGTTG AAGAAAAGCA GAACTCGTAT
TCAACAAAAG AGGACCATGA TACTGAAAAA ACAGGGGTTG GACAGGAAAT ACAAGGAAGT GTTGATCAAC CGAAAAAGAC
TGCAAAAATC CATGACTTCT GTTTAGGCAT TCCCTTTGGT GGTTTTGTTT TAACTGGAGG GATTGTTGGG TTCCTTTTTT
CACGGAGTCC TGCAACACTG AGCAGTGGTG TGCTCTTTGG TGGTGCTTTA CTGTTCCTCA GTACCCTTAG CTTGAAGGTC
TGGAGGCAAG GAAAATCGAG CTTACCATTT ATTCTAGGAC AAGCAGCATT GTCAGGGATT CTTATCTGGA AGAACTTCCA
GAGTTACTCA TTGGCAAAGA AAATATTTCC AACTGGTTTT AGTGCTATTA TAAGTTCTGC AATGCTCTGC TTTTATTTCT
ATGTGCTTAT CTCTGGAGGA AATCCCCCAC CTAAGAAATT GAAGCCATCT TCCAGCACTG CATGA

>Vigan.04G273000.01
MNANMAAATT ISQLGCFSAV HRSIHLRSRS LLFPSPRSKL SVVMSLERHD TDTAGTDTKN TLSYAADVSK LHVEEKQNSY
STKEDHDTEK TGVGQEIQGS VDQPKKTAKI HDFCLGIPFG GFVLTGGIVG FLFSRSPATL SSGVLFGGAL LFLSTLSLKV
WRQGKSSLPF ILGQAALSGI LIWKNFQSYS LAKKIFPTGF SAIISSAMLC FYFYVLISGG NPPPKKLKPS SSTA*