GBrowse Details

Vigan.04G264800.01

Basic Information:
Name: Vigan.04G264800.01
Multiple alignment
Variant Information
Position: Chr04:38518511..38522781 (- strand)
Length: 4271
Functional Information:
Description: Similar to DNA-directed RNA polymerase V subunit 5A-like, partial. [XP_006605207.1, Glycine max]
GO: Biological Process: transcription, DNA-dependent (GO:0006351)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: DNA-directed RNA polymerase activity (GO:0003899)
InterPro: RNA polymerase, subunit H/Rpb5 C-terminal (IPR000783)
RNA polymerase, Rpb5, N-terminal (IPR005571)
DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus (IPR014381)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.61,12.97,7.61,9.60,31.12,29.90,12.75,9.88
Arabidopsis thaliana homolog: AT3G57080.1
Automatic updates:
Name: NM_001249598 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max DNA-directed RNA polymerase II subunit family protein (LOC100306033), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:38518511..38518735 (- strand)
Length: 225
Type: three_prime_UTR
Position: Chr04:38518736..38518861 (- strand)
Length: 126
Type: CDS
Position: Chr04:38519836..38519949 (- strand)
Length: 114
Type: CDS
Position: Chr04:38521655..38521831 (- strand)
Length: 177
Type: CDS
Position: Chr04:38522380..38522667 (- strand)
Length: 288
Type: CDS
Position: Chr04:38522668..38522781 (- strand)
Length: 114
Type: five_prime_UTR

>Vigan.04G264800.01 class=Sequence position=Chr04:38518511..38522781 (- strand)
AAAAAATTGA AATATGAAAA TGAATATGTC TGTTTTAATT TAATGCTCGC AATCAGCAGT GAATTAAAAA GAAAAATTTG
AACCGAAGTG ACTTTGATTC ACAGTAAGAG AGAGATGGCA GCTGAGTACG GGTTCGAATT GGCGAGAGTG GGAGGAGAAG
GAGAAGAACA AGAAGAAGTG AAAGGGTGTT TGAGCAAGTT CATCGATGAT GGCAGCGTTG AAAGTCACAG ATACTACTTG
TCTCGCAGAA CCACTTTGGA AATGCTCAGA GACAGAGGCT ACTCCATTCC CTCCAGCGAA ATCGACCTTT CTCTCTCTCA
ATTCCGCCAC ATGCATGGTC ATTCCCCTGA CCCTGACCGT CTCCGCCTCT CCCTCACTCA CGCCACCAAC CCTTCCAAAA
GGGTATCCTT TTCTTCATCT CTTCTCCACC CAACATGCCC CCTCTTATCT TTCTCCCTCA ATTTCAATGT CTTCCCCTGA
AATCTACTGA AAAAATCAAT TTTTATATAC TGGCAATGTG TTTTTTACTA CTTTATAGGT GTAAAGAATC TACTAATGTT
TACTGAATGG TCATATCTTC TGGGTTCTTT CTTTTGATCA CTTTTTTTTT TCATCTGCAT GACACATTTG ATTTACCCTG
TCTGACCGGA CTTTTGGAGC AAAATTGATT TTGGATTAAA TTCATTTTGT TAAGTTGGTC TTATTGATTT AATGAAGTTA
TTTATGTTTT GATGTTTAAG TCTGAAAGTG AATACATGTT TCCTACCAAT TTTTTTTGTA AATTGAGTTT GTCTTGGTGT
TTTTTTCTAC TCTTAAATTA TGTTTGAGTA TACAGAGAAA AAGTTATCTT TTTATCTGTG TCAGAACGAA GTTTAGGGAC
GGACTCGGTA ACACCTGAAA ATGACTGAGC AGTTGCATTT GTAGTAAAAT CAGTTTCTTG ATGATTGCAG ATTTTAGTCA
TTTTCTGCGG GCCAGGTTCT GTGAAAGTTA CTGCCATTCG GAACATTGCG GGGCAGATTG TTAATAGAGA CACTTTGGGT
GGTCTTATAT TGATAGTGGA GAATCATGTT ACTAGCCAGG CCTTGAAAGC CGTTGATCTT TTTCCCTTCA AGGTTGAAAT
TTTCCAGGTT TGTGATTCTA TCTCAAATGT CTTTCATAAA TGTTCTACAG ATTGGTTTTC GATTTATTTG TTCTATCTTT
AGGTGGATAA TATAAAACTG CATGTTGTAT TTCTAGCAGG ATTGGTTGAC ACGGATTTTC TTTATTGACC TCTGTGCACT
TAAAATAGTT GTGATTACCA TGTTGAACAA ACCTATGTCA GATGTTTCGT GGTGTTTGAA TAATACTAAT ATTCACTTCA
GTTATGCTCA GCTATCAGTT TAACTGTTTT GGACAAGGTT TTAAATTGCA GCCACCTTAG CACAACTATA ATTTGTGGCT
GGGATTGGAT TGTGAACACC CCTAAAACCT TAACTTTGCT GCCAAGACTC TGGTTGTGAC CCTCTTTCAA AAAAGCCTTT
CTAGCTGTTA AGTTGATAGT AAATTGAGTT TTGTGCATAA GTCCTAACTG TTAAGTGTGG CTGAACCATC ACATTTCAGT
AAGTTCATTC AGTTAATGTT TTCACAGCAG GAGGTTTCTC TGATTCTCTC CCCATTTTCA CTCCTTTCTC TTGATATCTA
TCAGTTTCTC GCAGCGTGTT GATTTATTGA AAGCTAAGAG CTTTTTCCTT AACCAGAAAC CATGGCTTTC TCTCAAATCA
TAACTCACCT ATGCTTTTGC TATCAATCTA ACTAGGACAC TCTGAAAGCT GAACACTCTC AACTACATTC TTTTACTTTT
ATGAATTTTA CATGAACATA AATGGAAATA CTGTGTACTA TAATAAATAG ATAAATGATA GTATTTATTT ACTGATGCTA
ACTTTCAAAT GATTGATTCT ATCTCATAAT TAAAAATTGT GCTCACGTGA TTATTTTTTA CTAACTTCAT ATGTTGTCAT
AATTTTGTCA CTCTCACCGT TTTCTGCATT TCTATGTTCA TACTGTATTG GAGTACACGT CTATAGTTTC ATGAAGATGC
AACTTAAAAA TGGCCAGTAC AATGTAAGTG GTAAAGAATA AGGTTCAGCA GGAAATTGTT CCTTTGTGGA AGTGAAAGAT
GAAGAAAGTG AAAATAATTC CTTGTACTCT TTGAAGTCAG AAATTGTTTT AAAAGTGGTT AGTATGTTGG AGAACAGGTT
ATAAGTACTT GGCTAATTGA AGGCAGATTA GAAGCTTGGA AACTTCAGGA TTCTATTTCT TAGTTCATTA GTAGGAGAGG
TCCAATCATT ACATGGCAGA TGTAGCGAGA CAATCTTCTC CATTTAAAAA TTTCTTAATG TGATAGAAAG CTGTGCTATT
TAAACTGTTA TGATCATTTA ACACATGTGT GTCAAGCATG AATATATATG TACTGAAGTC CCTGTTTGTT CAGTCTTCAA
GTATATTTGA TATTCTGTCA TGCATAAACT GGGAGTTTGT CTACCTTTGG CATACCATTT TTTGCTAGAG GCAACATTGA
GTTTAGTGAT GCTTGCAAAT TTTGAGTAAC TATGGCATCT CATCCTGAAT GGCTTCACTT TGTACCCATA TTTGCTTCAG
TTGTGATCCA CCAAGCACTT GCACTTGTTA TAACCAAGTT ATTTTTTGAA TAATACCTAT AACATGAAAG ATGTCTCTGT
TATTTCATTT TTCTCTAATA TGAAACTTAT TGACTGATTT TCTTATCTGT GCTGACAAAA ACTTCGTTTC TTGCCCAAAA
ACCCATGTAA ATCTTTTTTC CTTGCTGTTC AGATCACAGA TTTGCTTGTT AATATTACAA AGCATGTGTT GAAGCCAAAG
CATCAGGTGC TGACTGATAG GCAGAAGAAA AATCTCCTGA AGAAGTTCAA TATAGAAGAA AAGCAGGTCA GTTGATACAA
TTTGAAAAAG CCTATCTCAG ACACGAACCT CGTCTTTCTG AATTGTCTAT GCCCTGGATA TGGACCCTTC TATTTAAGTT
ATTAATTTTT CTATGGTGCA TCTTCAGTGA ACTTGTGCAG TTTAGATTGA GTCATGTGTA GATAAAACGA AGTTGCATTT
TGACATTACC CAATGAAACC AATTTCTGTT GGAGATCACA TTGGTTTCAC ATTGAAATAT GTAACTAAAC TTTTACACTT
TGATAATTGA CTCAATTGAT GCCTAGATAT GTGCTACTTT GATGTGGTTT CTCAAGTAGT GTGGCCTGCT ATAATGTTGT
ACTTAATCAT GTTCTAGTAA ATACAAATAT AGATAAACAT GGAAACTTTC TGTCACGGTA ATTGTGAAAA CCAATGCATG
ACCTTGAGTT GTAAACTCCA TTGCATTTAG AAAGGGTGTT GTGCTAAGAT CTGCTCAATC TTTAAGGACT TATCTAAGAT
ATCCCTGCAA GTTCATGATA CAGCAAGAAC ATTTTAGACA GGGCTGATGT GTGTCTGACC TCTGCGTATG GAATCAAAAG
ATCTGAAGAA GTCCGTTGCC AAAATAAATG ATAAAAGGAA ATAAAATGAA TTTAATGAAC CAAAGGTCAG AAAATAGTAT
ATAAGTTTTA TTCTTGAAAT GATGGAAACA TGTTTGTTAT GATTAAATGT GCTTAGCCAT ATGAAATACT GATATTTGTA
TTCATTCTTC TATAAAACAT ATACAAATTG TATTCTATTC TATGGATCTT AAATTCTGTG TTATTTTCAT AGTCGAACAT
AAATGTTAAG TTTTCTAGTT CTTAGCTTCT CCATGCGCTA CCGATTGACG AAATTGCGTG ATAATAATAG TTGAGAACAT
ATCATAGTAT AACTTTTGCA TGAATGTAAA ATTTCATATT CCAAGACAAG CACTCTTATA TTAAGTTTTT GTGTTTTCAG
CTTCCCCGCA TGCTAAAGAG TGATGCAATT GCACGATATT ATGGACTTGA GAGGGGCCAA GTAGTTAAAG TTACCTATAG
TGGTGAAATC ACCCAGATGC ATGTCACATA TCGATGTGTG TGGTGATAGT TTCTTGTGCT CTTTTGTATT TTTGCAGGTT
GAATTCGTAG TATTTAACTG TTGTATCATG CTTAAGGTTA TGATTGCATA AGTTGATCAA TCCTAACGCT CTGAATCTGT
ACTCTGTAAA TTTGGTGATG ACATTTCTCT CTCTTAACTT CTTGAAGAAC AACCTGCATT GAGCAACTTC ATTCACAAAC
GTTTATTTTA TTTATTTACA TTTTTGTGAA A

>Vigan.04G264800.01
AAAAAATTGA AATATGAAAA TGAATATGTC TGTTTTAATT TAATGCTCGC AATCAGCAGT GAATTAAAAA GAAAAATTTG
AACCGAAGTG ACTTTGATTC ACAGTAAGAG AGAGATGGCA GCTGAGTACG GGTTCGAATT GGCGAGAGTG GGAGGAGAAG
GAGAAGAACA AGAAGAAGTG AAAGGGTGTT TGAGCAAGTT CATCGATGAT GGCAGCGTTG AAAGTCACAG ATACTACTTG
TCTCGCAGAA CCACTTTGGA AATGCTCAGA GACAGAGGCT ACTCCATTCC CTCCAGCGAA ATCGACCTTT CTCTCTCTCA
ATTCCGCCAC ATGCATGGTC ATTCCCCTGA CCCTGACCGT CTCCGCCTCT CCCTCACTCA CGCCACCAAC CCTTCCAAAA
GGATTTTAGT CATTTTCTGC GGGCCAGGTT CTGTGAAAGT TACTGCCATT CGGAACATTG CGGGGCAGAT TGTTAATAGA
GACACTTTGG GTGGTCTTAT ATTGATAGTG GAGAATCATG TTACTAGCCA GGCCTTGAAA GCCGTTGATC TTTTTCCCTT
CAAGGTTGAA ATTTTCCAGA TCACAGATTT GCTTGTTAAT ATTACAAAGC ATGTGTTGAA GCCAAAGCAT CAGGTGCTGA
CTGATAGGCA GAAGAAAAAT CTCCTGAAGA AGTTCAATAT AGAAGAAAAG CAGCTTCCCC GCATGCTAAA GAGTGATGCA
ATTGCACGAT ATTATGGACT TGAGAGGGGC CAAGTAGTTA AAGTTACCTA TAGTGGTGAA ATCACCCAGA TGCATGTCAC
ATATCGATGT GTGTGGTGAT AGTTTCTTGT GCTCTTTTGT ATTTTTGCAG GTTGAATTCG TAGTATTTAA CTGTTGTATC
ATGCTTAAGG TTATGATTGC ATAAGTTGAT CAATCCTAAC GCTCTGAATC TGTACTCTGT AAATTTGGTG ATGACATTTC
TCTCTCTTAA CTTCTTGAAG AACAACCTGC ATTGAGCAAC TTCATTCACA AACGTTTATT TTATTTATTT ACATTTTTGT
GAAA

>Vigan.04G264800.01
ATGGCAGCTG AGTACGGGTT CGAATTGGCG AGAGTGGGAG GAGAAGGAGA AGAACAAGAA GAAGTGAAAG GGTGTTTGAG
CAAGTTCATC GATGATGGCA GCGTTGAAAG TCACAGATAC TACTTGTCTC GCAGAACCAC TTTGGAAATG CTCAGAGACA
GAGGCTACTC CATTCCCTCC AGCGAAATCG ACCTTTCTCT CTCTCAATTC CGCCACATGC ATGGTCATTC CCCTGACCCT
GACCGTCTCC GCCTCTCCCT CACTCACGCC ACCAACCCTT CCAAAAGGAT TTTAGTCATT TTCTGCGGGC CAGGTTCTGT
GAAAGTTACT GCCATTCGGA ACATTGCGGG GCAGATTGTT AATAGAGACA CTTTGGGTGG TCTTATATTG ATAGTGGAGA
ATCATGTTAC TAGCCAGGCC TTGAAAGCCG TTGATCTTTT TCCCTTCAAG GTTGAAATTT TCCAGATCAC AGATTTGCTT
GTTAATATTA CAAAGCATGT GTTGAAGCCA AAGCATCAGG TGCTGACTGA TAGGCAGAAG AAAAATCTCC TGAAGAAGTT
CAATATAGAA GAAAAGCAGC TTCCCCGCAT GCTAAAGAGT GATGCAATTG CACGATATTA TGGACTTGAG AGGGGCCAAG
TAGTTAAAGT TACCTATAGT GGTGAAATCA CCCAGATGCA TGTCACATAT CGATGTGTGT GGTGA

>Vigan.04G264800.01
MAAEYGFELA RVGGEGEEQE EVKGCLSKFI DDGSVESHRY YLSRRTTLEM LRDRGYSIPS SEIDLSLSQF RHMHGHSPDP
DRLRLSLTHA TNPSKRILVI FCGPGSVKVT AIRNIAGQIV NRDTLGGLIL IVENHVTSQA LKAVDLFPFK VEIFQITDLL
VNITKHVLKP KHQVLTDRQK KNLLKKFNIE EKQLPRMLKS DAIARYYGLE RGQVVKVTYS GEITQMHVTY RCVW*