GBrowse Details

Vigan.04G251300.01

Basic Information:
Name: Vigan.04G251300.01
Multiple alignment
Variant Information
Position: Chr04:36904135..36906316 (+ strand)
Length: 2182
Functional Information:
Description: Similar to Uncharacterized protein. [M5WAL0, Prunus persica]
GO: Molecular Function: calcium ion binding (GO:0005509)
InterPro: EF-hand domain (IPR002048)
EF-hand domain pair (IPR011992)
EF-Hand 1, calcium-binding site (IPR018247)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:36.02,13.44,38.19,32.51,65.87,70.44, 68.43,43.55
Arabidopsis thaliana homolog: AT3G43810.1
Automatic updates:
Name: DQ778070 NCBI(nuccore)
Organism: Vigna radiata var. radiata
Description: Vigna radiata var. radiata calmodulin mRNA, partial cds.
PubMed ID: -
Status: Known Variant
Name: NM_001249180 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max calmodulin (LOC100527439), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249782 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max calmodulin (SCAM-3), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250954 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max calmodulin (SCAM-2), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251308 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max calmodulin (SCAM-1), mRNA.
PubMed ID: 24254124 NCBI(pubmed)
18347016 NCBI(pubmed)
Status: Known Variant
Name: NM_001255761 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max calmodulin-like (LOC100817351), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:36904135..36904332 (+ strand)
Length: 198
Type: five_prime_UTR
Position: Chr04:36904333..36904408 (+ strand)
Length: 76
Type: CDS
Position: Chr04:36905144..36905517 (+ strand)
Length: 374
Type: CDS
Position: Chr04:36905518..36906316 (+ strand)
Length: 799
Type: three_prime_UTR

>Vigan.04G251300.01 class=Sequence position=Chr04:36904135..36906316 (+ strand)
ATAAGTTGTT ATAGAAAAAA ACGGAAACAA GTCAATTTTA TTTACGGTAA AGAAAAAAAG ATAAAACGGG AGGTTTTGTC
GGAATAAGAT TCAAACGCTG TTTTCTGCAG TTTCTTCGTT TCTCTCTCTC TTTCTTCAGA AAAAAAGGCA GAAAAAAAAA
ACATTCAAAG AAAGAAAGAG CAATTCATTC CAATTACAAT GGCAGATCAA CTCACCGATG ATCAGATCTC CGAGTTCAAG
GAAGCCTTCA GCTTGTTCGA TAAGGATGGC GATGGTAACT TCCCACCAAT CACTTCTCTT TCTTTTTCAA TTTTTTTGTG
GGTTTTCGAT TCGTTATCCT AATTACTTTA TTCTACAGAG AAAAATTAAA TGAAACAATT TATTAATTTT TTCCCCTTTC
TTTTTGGTTT TGCTTCCCAA AATGAATACC TCAGATATAT CATGGTTGCA ATCGGAAAGA ACTCCACCCA TGTTTATGAT
TCTTATTTTA TGAAAACATG AGTCCGTTTC TTTAAAAGAA GTATTTTATT TACCTTCGTT ATGGTAAATT TTATTGATTT
TTCAAACTTT AACATGTACT TTTTAATGTG TTATTTGTAA CAATCCTTTC ATTTTCCAAT GTTTAACCAT ATTTTAATTA
CAGGATATTT TAAGAACAAA ATAACTTCCA AAATATTGGA TGAACTTGCA AGAATTGTTT TAGCTTGATT AGTGTTCTGT
AGTTTAAACC TGGGTTATAT AGTTTATTGC CTCCAGTAGA AGAATTACAG AACAAAAATA TTTATTTATT TATTTTATTT
CTTTCAATTT TTCTTTGAAA TCCTAGGGGA AGGGATCTGA AAAGTCCAAA TAAAAAAGAT AATTGGAAAG ACATTTAAGT
TTTATGCAGA TTGCAGAACA TTGTGTATGT GGCATCCATC CCTTTGAGCA TGATTAAGAT TTGCAAGCAT GAGTTAAATT
GGGAGTTTAC TTTTTGGTGA TTTTTACATG GTATTTGATG TTGTTTCAGG TTGCATCACA ACAAAGGAGC TTGGAACTGT
CATGCGTTCT TTGGGTCAGA ATCCCACTGA GGCAGAGCTC CAAGACATGA TCAACGAAGT AGATGCTGAT GGCAATGGCA
CCATTGACTT CCCTGAGTTC TTGAATCTCA TGGCCAGAAA GATGAAGGAC ACTGACTCTG AAGAGGAGCT GAAAGAGGCG
TTCCGAGTGT TCGACAAGGA CCAGAATGGG TTCATTTCTG CTGCTGAGCT CCGCCACGTG ATGACCAACC TTGGGGAGAA
GCTCACTGAC GAAGAGGTTG ATGAGATGAT TCGAGAGGCT GACGTTGATG GTGATGGCCA AATAAATTAT GAGGAGTTTG
TTAAGGTCAT GATGGCCAAG TGATGGTACA CCATCTCCAC TAAATTCTGA ATTGAATTGA TGAAAAATCT GAATTATGAC
TGTGCTATAT AGAACATCTA GTCCTTGTCT ACCTGTCATT TCTGTCTTCT TTCTAAATTT TTATATGATG CTTTTTGAAT
TCAATCTTAA CGACGTTTAG TGGAAATCAC TGCTGCTAAT GGTAATTGTG TTGCAATGGT GTCTTTTGAT GTTTATTTAA
CTCTGGTTTC TAGTCATTGT CTAAGACAAG GTAAGTAAAA TAAGTTTGAG ATTACTGCAA TCTAGACTAA AACATGGTTG
ATATCCTCGC ACAAATATTT GTTTCATTGC ATTGGAACAT ACAACCTTTT GAACTCTAGG TTTTTGTTAA TTCCAGGTTG
TAATTCTGAT TTTACCATGT TTCCTTGGTT TTTCTGACTC AACTCGCTGA AGCAGGAGTA ATATGATAAG ACCTATTCCT
TATTTTCATT GATGACTCTC CTATGAGCTT GTTATAGTTG CATTGTTTTA GTAGGCTCCA ATCCATACTC CATCAACTCT
TATCTGTGCT TGCTTTCCAC CCTTTTAGCA TTCATAGCAA AAGTAGTTTC CCCATTTTTG GTTTGTCTTA TGCAGTTGAG
TACAACATTG TAGGTTTTGA TGTTCTATGT CAGTCCTTCC TGGCACAGGG AAGACTCATG AAATGATAAT ATATACCAAC
AAACAAAGAT CCCCTTTCCA ATGTAACTTC CAGTTAGACC CTATTAATAT ATACATTATC TTTTCTACCA TCATCTGAAT
GCACATCTCC GATGAACTCC AT

>Vigan.04G251300.01
ATAAGTTGTT ATAGAAAAAA ACGGAAACAA GTCAATTTTA TTTACGGTAA AGAAAAAAAG ATAAAACGGG AGGTTTTGTC
GGAATAAGAT TCAAACGCTG TTTTCTGCAG TTTCTTCGTT TCTCTCTCTC TTTCTTCAGA AAAAAAGGCA GAAAAAAAAA
ACATTCAAAG AAAGAAAGAG CAATTCATTC CAATTACAAT GGCAGATCAA CTCACCGATG ATCAGATCTC CGAGTTCAAG
GAAGCCTTCA GCTTGTTCGA TAAGGATGGC GATGGTTGCA TCACAACAAA GGAGCTTGGA ACTGTCATGC GTTCTTTGGG
TCAGAATCCC ACTGAGGCAG AGCTCCAAGA CATGATCAAC GAAGTAGATG CTGATGGCAA TGGCACCATT GACTTCCCTG
AGTTCTTGAA TCTCATGGCC AGAAAGATGA AGGACACTGA CTCTGAAGAG GAGCTGAAAG AGGCGTTCCG AGTGTTCGAC
AAGGACCAGA ATGGGTTCAT TTCTGCTGCT GAGCTCCGCC ACGTGATGAC CAACCTTGGG GAGAAGCTCA CTGACGAAGA
GGTTGATGAG ATGATTCGAG AGGCTGACGT TGATGGTGAT GGCCAAATAA ATTATGAGGA GTTTGTTAAG GTCATGATGG
CCAAGTGATG GTACACCATC TCCACTAAAT TCTGAATTGA ATTGATGAAA AATCTGAATT ATGACTGTGC TATATAGAAC
ATCTAGTCCT TGTCTACCTG TCATTTCTGT CTTCTTTCTA AATTTTTATA TGATGCTTTT TGAATTCAAT CTTAACGACG
TTTAGTGGAA ATCACTGCTG CTAATGGTAA TTGTGTTGCA ATGGTGTCTT TTGATGTTTA TTTAACTCTG GTTTCTAGTC
ATTGTCTAAG ACAAGGTAAG TAAAATAAGT TTGAGATTAC TGCAATCTAG ACTAAAACAT GGTTGATATC CTCGCACAAA
TATTTGTTTC ATTGCATTGG AACATACAAC CTTTTGAACT CTAGGTTTTT GTTAATTCCA GGTTGTAATT CTGATTTTAC
CATGTTTCCT TGGTTTTTCT GACTCAACTC GCTGAAGCAG GAGTAATATG ATAAGACCTA TTCCTTATTT TCATTGATGA
CTCTCCTATG AGCTTGTTAT AGTTGCATTG TTTTAGTAGG CTCCAATCCA TACTCCATCA ACTCTTATCT GTGCTTGCTT
TCCACCCTTT TAGCATTCAT AGCAAAAGTA GTTTCCCCAT TTTTGGTTTG TCTTATGCAG TTGAGTACAA CATTGTAGGT
TTTGATGTTC TATGTCAGTC CTTCCTGGCA CAGGGAAGAC TCATGAAATG ATAATATATA CCAACAAACA AAGATCCCCT
TTCCAATGTA ACTTCCAGTT AGACCCTATT AATATATACA TTATCTTTTC TACCATCATC TGAATGCACA TCTCCGATGA
ACTCCAT

>Vigan.04G251300.01
ATGGCAGATC AACTCACCGA TGATCAGATC TCCGAGTTCA AGGAAGCCTT CAGCTTGTTC GATAAGGATG GCGATGGTTG
CATCACAACA AAGGAGCTTG GAACTGTCAT GCGTTCTTTG GGTCAGAATC CCACTGAGGC AGAGCTCCAA GACATGATCA
ACGAAGTAGA TGCTGATGGC AATGGCACCA TTGACTTCCC TGAGTTCTTG AATCTCATGG CCAGAAAGAT GAAGGACACT
GACTCTGAAG AGGAGCTGAA AGAGGCGTTC CGAGTGTTCG ACAAGGACCA GAATGGGTTC ATTTCTGCTG CTGAGCTCCG
CCACGTGATG ACCAACCTTG GGGAGAAGCT CACTGACGAA GAGGTTGATG AGATGATTCG AGAGGCTGAC GTTGATGGTG
ATGGCCAAAT AAATTATGAG GAGTTTGTTA AGGTCATGAT GGCCAAGTGA 

>Vigan.04G251300.01
MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT
DSEEELKEAF RVFDKDQNGF ISAAELRHVM TNLGEKLTDE EVDEMIREAD VDGDGQINYE EFVKVMMAK*