GBrowse Details

Vigan.04G235800.01

Basic Information:
Name: Vigan.04G235800.01
Multiple alignment
Variant Information
Position: Chr04:34762448..34765565 (+ strand)
Length: 3118
Functional Information:
Description: Similar to Uncharacterized protein. [G7Z0A6, Glycine max]
InterPro: Phosphatidylethanolamine-binding protein PEBP (IPR008914)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.00,96.34,0.00,0.00,0.03, 0.05
Automatic updates:
Name: NM_001253065 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein FLOWERING LOCUS T-like (GMFT5A), mRNA.
PubMed ID: 29120038 NCBI(pubmed)
27422993 NCBI(pubmed)
20864544 NCBI(pubmed)
Status: Known Variant
Name: NM_001254595 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max FLOWERING LOCUS T-like protein (GMFT5B), mRNA.
PubMed ID: 20864544 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:34762448..34762479 (+ strand)
Length: 32
Type: five_prime_UTR
Position: Chr04:34762480..34762674 (+ strand)
Length: 195
Type: CDS
Position: Chr04:34762779..34762840 (+ strand)
Length: 62
Type: CDS
Position: Chr04:34764241..34764281 (+ strand)
Length: 41
Type: CDS
Position: Chr04:34764975..34765195 (+ strand)
Length: 221
Type: CDS
Position: Chr04:34765196..34765565 (+ strand)
Length: 370
Type: three_prime_UTR

>Vigan.04G235800.01 class=Sequence position=Chr04:34762448..34765565 (+ strand)
CAAACAGAAA ACAAGCATAT ATCTTGTATA TCATGGCACG AGAGGATCCT CTTTCTATTG GTGGTGTGAT AGGGGATGTT
CTGAACCCTT TTACAAGCTC AGTTTCTCTC ACAATTTCCA TCAACAACAG AGCGATTAGC AATGGCTATG AACTGAGGCC
CTCTCACGTT GTTAACCGCC CTAGAGTTAC TGTAGGTGGT GAAGACCTAA GGACCTTCTA CACTCTGGTC AGTTCTATTA
ATTAACTAAC TAAACAGTAC AATTCTTTAA TTAATTATGT TATTAACAGC TACCGGCATC TTTTCTGCAT AAAATTTTAT
TGTTGAATTA GGTTCTGGTA GATGCAGATG CACCTAGCCC TAGTAACCCC GTCTTGAGGG AATACCTCCA CTGGTTAGTT
CTCTAGCTTT TTTTATCTAA TTTCTGTCAT TTTACAACAA GAACAGGTGA AAGGAAAAAA AATAAAAATA AAAATAAAAA
TAAAATTGGT GACATGTTGA TGTTTTATGC TATATCCAAT GAAGTCTATA TATCATTAGA GTATGCTCAA CTGATTTTAT
AAAGAAAAGA TGTGACTTAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT
GAGGTTTCTT AACGTGCGTA CGTCTGTTTT TCAGTTGGTA CATTTTAGCA ATGTGTATCG GGTTTTAGTA GACAAAAATA
CCTTTATATA TCAAGTTTTA AGGTTAATGG TATTTTAATA ATTTTCATTC TCAAAACTTA AAAACAAAAA AAGAAACCCT
CAAACCCTTA CTCACCTCTC TCATTCCTCT CAACCCTTTC TCTTTCATCT CTCTCACTCC AACCTTTTCT CTATCATCCC
TACTGTAGTC CCAATTGAAA AAATCAGAAA CACTTGCCGT TAAACAATTT GCCTTTGTAA AGAGTTGAGT CATTGACATA
TTCACCGCAA AGGTTCATTC AAGTTCTCTT CAATTTCACC ATCTTCACTA ACCTCTCTAA TTTCATCATC TGCATAGGTT
GAATCATCAT CTCTAAAAAA ACCCTCCAGT CCAATTTATC AATTCCTTCT GATGTCATTA TGTTTGTGAA AATTAGATAA
AATTATATAC GACAAAAATT ATAAAATGAA AACTCATTAT AAAATCATTT TTTTGTAAGA AATTGTTTAA CAACTGAGTG
TTTCTGATTT TTTTCAAGCC AATTACCAAT TCCTTTGATG TCATTATGCT TGTAAAAATT AGATAAAATT AGATAAGAAA
AAAATTATAA AATTTAAAAC TCGTTATAAA ATATTTTTTT GTAAGAAATT GTTTAACAGC GAGTATGTCT GATTTTTTAC
AGGTCAATTA CCAATTCCTT TATACTTGTG AAAATTGGAT AAAATTAGAT AAGACAAAAA TTATAAAATG AAAACTCATT
ATAAAATCAT TTTTTGTAAG ATTGTTTAAC TGGCAAGTGT TTCTGATTTT TTGAATTGAG GCTACAGTAG GGATGACAGA
GAAAAAGTTA GAGTGAGAGA GATGAAAGAG AAAGGGTTGA GAGGAATGAG AGAGGTGAGT AAGTGGAGTT TTTAAAATTA
TTAAAATACT CTTAACCTTA AAACTTAGAA TCCATGATAT ATAAGAGTAT TTTTATCTAC TAAAATCCGT ACACATTGCT
AAAATGTACC AACTGAAAAA CAGGTGTACG CGCGTTAGCA AACCCATATA TATATATATA TATATATATA TATATTGTAT
ATTTTTGTAA CTTTTTTTGT TTAACAATGG CAGGATGGTG ACAGATATTC CAGCAACCAC AAATGCAAGC TTTGGTAAGT
ACAAATTCTG TGTTGTTCAT GCCAGTATAT GGCCAGGGTT AAAATTAGAT GTAGTTCACC TGTTTCATTT ATCAATTGAT
GATCAAGCAA GGGTTGTTAG TTAAGTTATT CATTTAAACC AAGTTCCTTT TCATGAACTT AATTTATAAT TTAACTCCGT
CTGGATGCAA GCCTGTAGCT AGAGACATCA GTTTAGAAGA CATCTGGAAT AAATCTAGGA AATTTATTCA AAAATTAAAT
TTATAATTTG TTAATTTTTT TCTTTTATGT TATTTTAATA AGATTAATTT CTGATTAAAC TTATTCCTGT GAGATTAACT
TGAGCCAAAC TGAAAAAACC GGTTTTGAAA ACATAAGAAA ATGAACATCA AACAAACTGA TAGGTAAATA TATAGTGTTG
TTAAACAGTG CTCAAATGAT CGAGTTTATT CATTAATTTT CACATGTTTA AGCTCCAGAT AATTCAATAC GAATATGGGA
GGTTATAGAG AGAACACTAT TGTTACCTTT CATAATGACA TGTAATAGTT ACCCTTTTGT TAATTATTAT GTGTATTATA
CAAGAGAATA TGAAAGTGTG ATGAGAAGCA TCTGGTCACA TTACACTCAG TGTATGGGTG GGTTTTTGAA TTATTTTCTT
GATTGAAGCA ATTAATAGTA TTGTTAAAAG ACTTATGCAT TATTCAGGTA GGGAGGTTGT GGTTTATGAG AGTCCACAAC
CTTCAGCAGG GATTCATCGA CTTGTGTTTG TGTTGTTCCA GCAATTGGGC AGAGACACTG TCATCAGCCC AGAACTTCGT
CATAATTTCA ATTCCAGAAA CTTTGCTGAA AATAATAACC TCACACCTGT TGCAGCAGCT TATGTCAACT GCCAAAGAGA
GCGTGGGTGC GGTGGAAGGA GGTACTAACT TCAGTAAGGA ATTTCGAGAA CGTGTTAAGT AATTAATATG ATATATAATG
TCAAATAAAG AAAAATAATA GGTGTTTAGA GCAATAGTTA GCACACCACT ATCAGTTAAT GAGAGAAAAA TAACAAGTTA
GAAATAAATA AATAAATAAA ATCTCTCTTT TTAAAGAATT ACAGAAGGTT ATCTTCAATA CTAGAGTCTA TCATTCAGAT
ACTTCAACAG ATTATGGCTG CAACTGAAGA AAAAAGAAGA AAAAAAGTGT ATGCATGGCT CGTACCTACT GCGACTTGAT
CCAGTAATAT TATAATATTA AGAGTCTTTT GTTTTGAATA AGGCTTGCTT CAATAAACTA CACACGTTAT TACTACCA

>Vigan.04G235800.01
CAAACAGAAA ACAAGCATAT ATCTTGTATA TCATGGCACG AGAGGATCCT CTTTCTATTG GTGGTGTGAT AGGGGATGTT
CTGAACCCTT TTACAAGCTC AGTTTCTCTC ACAATTTCCA TCAACAACAG AGCGATTAGC AATGGCTATG AACTGAGGCC
CTCTCACGTT GTTAACCGCC CTAGAGTTAC TGTAGGTGGT GAAGACCTAA GGACCTTCTA CACTCTGGTT CTGGTAGATG
CAGATGCACC TAGCCCTAGT AACCCCGTCT TGAGGGAATA CCTCCACTGG ATGGTGACAG ATATTCCAGC AACCACAAAT
GCAAGCTTTG GTAGGGAGGT TGTGGTTTAT GAGAGTCCAC AACCTTCAGC AGGGATTCAT CGACTTGTGT TTGTGTTGTT
CCAGCAATTG GGCAGAGACA CTGTCATCAG CCCAGAACTT CGTCATAATT TCAATTCCAG AAACTTTGCT GAAAATAATA
ACCTCACACC TGTTGCAGCA GCTTATGTCA ACTGCCAAAG AGAGCGTGGG TGCGGTGGAA GGAGGTACTA ACTTCAGTAA
GGAATTTCGA GAACGTGTTA AGTAATTAAT ATGATATATA ATGTCAAATA AAGAAAAATA ATAGGTGTTT AGAGCAATAG
TTAGCACACC ACTATCAGTT AATGAGAGAA AAATAACAAG TTAGAAATAA ATAAATAAAT AAAATCTCTC TTTTTAAAGA
ATTACAGAAG GTTATCTTCA ATACTAGAGT CTATCATTCA GATACTTCAA CAGATTATGG CTGCAACTGA AGAAAAAAGA
AGAAAAAAAG TGTATGCATG GCTCGTACCT ACTGCGACTT GATCCAGTAA TATTATAATA TTAAGAGTCT TTTGTTTTGA
ATAAGGCTTG CTTCAATAAA CTACACACGT TATTACTACC A

>Vigan.04G235800.01
ATGGCACGAG AGGATCCTCT TTCTATTGGT GGTGTGATAG GGGATGTTCT GAACCCTTTT ACAAGCTCAG TTTCTCTCAC
AATTTCCATC AACAACAGAG CGATTAGCAA TGGCTATGAA CTGAGGCCCT CTCACGTTGT TAACCGCCCT AGAGTTACTG
TAGGTGGTGA AGACCTAAGG ACCTTCTACA CTCTGGTTCT GGTAGATGCA GATGCACCTA GCCCTAGTAA CCCCGTCTTG
AGGGAATACC TCCACTGGAT GGTGACAGAT ATTCCAGCAA CCACAAATGC AAGCTTTGGT AGGGAGGTTG TGGTTTATGA
GAGTCCACAA CCTTCAGCAG GGATTCATCG ACTTGTGTTT GTGTTGTTCC AGCAATTGGG CAGAGACACT GTCATCAGCC
CAGAACTTCG TCATAATTTC AATTCCAGAA ACTTTGCTGA AAATAATAAC CTCACACCTG TTGCAGCAGC TTATGTCAAC
TGCCAAAGAG AGCGTGGGTG CGGTGGAAGG AGGTACTAA

>Vigan.04G235800.01
MAREDPLSIG GVIGDVLNPF TSSVSLTISI NNRAISNGYE LRPSHVVNRP RVTVGGEDLR TFYTLVLVDA DAPSPSNPVL
REYLHWMVTD IPATTNASFG REVVVYESPQ PSAGIHRLVF VLFQQLGRDT VISPELRHNF NSRNFAENNN LTPVAAAYVN
CQRERGCGGR RY*