GBrowse Details

Vigan.04G234400.01

Basic Information:
Name: Vigan.04G234400.01
Multiple alignment
Variant Information
Position: Chr04:34562716..34565326 (- strand)
Length: 2611
Functional Information:
Description: Similar to Uncharacterized protein. [I1ML66, Glycine max]
GO: Biological Process: glucose metabolic process (GO:0006006)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (GO:0016620)
Molecular Function: NADP binding (GO:0050661)
Molecular Function: NAD binding (GO:0051287)
InterPro: Glyceraldehyde-3-phosphate dehydrogenase, type I (IPR006424)
NAD(P)-binding domain (IPR016040)
Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (IPR020828)
Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (IPR020829)
Glyceraldehyde 3-phosphate dehydrogenase, active site (IPR020830)
Glyceraldehyde/Erythrose phosphate dehydrogenase family (IPR020831)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.88,0.79,299.44,3355.83,0.46,476.44,5.12,344.97
Arabidopsis thaliana homolog: AT1G12900.1, AT1G42970.1, AT3G26650.1
Automatic updates:
Name: NM_001251555 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max glyceraldehyde-3-phosphate dehydrogenase A subunit (LOC732655), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:34562716..34562955 (- strand)
Length: 240
Type: three_prime_UTR
Position: Chr04:34562956..34563458 (- strand)
Length: 503
Type: CDS
Position: Chr04:34563606..34563850 (- strand)
Length: 245
Type: CDS
Position: Chr04:34564038..34564342 (- strand)
Length: 305
Type: CDS
Position: Chr04:34564859..34564975 (- strand)
Length: 117
Type: CDS
Position: Chr04:34565096..34565137 (- strand)
Length: 42
Type: CDS
Position: Chr04:34565138..34565326 (- strand)
Length: 189
Type: five_prime_UTR

>Vigan.04G234400.01 class=Sequence position=Chr04:34562716..34565326 (- strand)
CACCAATCAC AACCATTCAT TGCATGAGAG GCTATCCATA ATCTCATCCT CACTTACGCT CATGAGTCAC AGCCACACAT
CCACGTTGCC TCCTCTTGCT TCCCTATTAA ACTTTACAAC ACATAACAAC ATGGAACCTC ATTCTACTCT ACTGCTTCAC
TTCTGCTACA CAAAATCCAC TGCTCAAACA TGGCTTCGGC TACTCTCTCT GTAGCCAAAC CAGCTCTTCA GGTTCAATAA
CTTATCCATT TTCATTCATC CTAAGAAAGA TAGTTGTGTT TCTTATTGTG CCATATTTTA TAAGGCTAAG GTTGTTGTTT
ATGATAGTTT TTCATTCCTC TGTCTATTCA GGCAAATGGG AAAGGCTTCT CTGAGTTCTC TGGTCTTCGC AGCTCATCAA
ACCACCTTCC CTTTTCCAGA AAAGCTTCTG AGGATTTCCA TTCTGTCATT GCCTTCCAGA CTTATGCAGT AAGTTCCTTA
CTCTACTCCA TTAATGACTG TCTAATTTTA CTGTAAAGTA AAAGTACTAG GTAAGTGGAT ATAGATATAC AACATATACA
AGAAATTATC ACATACATAT ATATATATAT ATATATATAT ATATATATAT ATAGATAGAT AGATAGATAG ATATACTTCC
AGAACTATGT AACGAAACCA AATTTTTCAT ATGGTACATT AGAAAGTCCT TTAGTTTATA ATTTGGCTTT TTTAGCTGTT
GATATACCAC AAATTATTTA TAATGTGTCT GAACCAAAAA CACACACTCA ATTCGCGATC ATCATTCTGT AAGAGTTCTT
GCTTTGAATT ATCAGAGTAT GAACTAGGCC TTTCAACATT TGAGCACAAA AAGAAACAAG GAAAGGAAAC ACCAGGGTGA
ACCAATGAAT TGTTAATCAT GCATACGATG ATATGAAAGA GTTAATTAGA AAGAAAAAGA GCGTGATGTG TTTAACAATG
TTGGTATTAT GGGTACTTTT GAAGGTTGGA AGCAGTGGAG GATACAAGAA GGGTGTGGTG GAAGCAAAAT TGAAGGTTGC
CATAAACGGA TTTGGAAGAA TTGGAAGGAA CTTCTTGAGA TGCTGGCACG GTCGTAAAGA GTCCCCTCTT GATGTCATTG
CCATCAACGA CACTGGTGGT GTGAAACAAG CCTCTCACCT CCTCAAGTAC GATTCTATCC TTGGAACCTT CGATGCTGAT
GTCAAGCCTG TGGGCAGTGA TATCATCTCC GTTGATGGAA AAGAAATCAA AGTCGTCTCT GACCGTAACC CTGCCAACCT
TCCTTGGAAG TAAGCTTCTT CTTCAGTTCC ATGCAATTAA AGTCTCTTTG GATACAAAAC TATAAGTACT TTTCAAAGTT
TCTCTTGCTA GAAACAAAAC TATGTTTGTG TCCAAACATG CTCCTAGTTT ACTAAAATTT TGAAGTGGTT TTCTAAGAGT
GAGATGCATG AAGGTGAACG TGTGGTTTTA TTGCAGGGAG TTGGGGATAG ACTTGGTGAT TGAAGGAACT GGGGTGTTTG
TAGACAGAGA AGGTGCTGGG AAACACATTC AAGCAGGAGC TAAGAAGGTA CTCATCACAG CACCTGGTAA AGGAGACATC
CCCACCTATG TGGTCGGTGT CAATGAATAT GATTACAGCG CAGATGAACC CATCATCAGC AATGCCTCTT GCACCACTAA
CTGCCTTGCA CCCTTTGTCA AGGTCCTCGA CCAGAAATTC GGTAATGTTC CTTCTCACCA CATTTTCTGT CAAATTCATT
CCTCATATTT GATAAGGACA TGATCAAACA TCCTGGTTTG ACATGTTTTG AAAGATGGTT TGACAATTTC TCACCACTAT
GGCAATGGAA ACTGACAATC CATGGCAGGT ATCATCAAGG GAACCATGAC AACCACTCAC TCTTACACCG GAGACCAGAG
GCTTCTTGAT GCGAGCCACC GTGACCTAAG GCGTGCTAGG GCCGCAGCTC TGAACATTGT CCCCACTTCA ACCGGAGCAG
CAAAGGCGGT GGCCCTTGTG CTGCCAACCC TGAAAGGGAA ACTGAACGGC ATTGCATTGC GTGTGCCAAC CCCAAATGTT
TCAGTAGTGG ACCTTGTCGT TCAGGTGTCA AAGAAGACCT TTGCAGAAGA AGTGAATGCA GCGTTCAGAG AGAGTGCAGA
GAAGGAGCTG AAGGGAATTC TGTCGGTGTG TGATGAGCCT CTTGTGTCTG TTGACTTCAG GTGCACTGAT GTGTCTTCAA
CCGTTGACTC CTCGTTGACC ATGGTGATGG GAGATGACAT GGTGAAGGTG ATTGCTTGGT ATGACAACGA GTGGGGCTAC
TCCCAAAGGG TTGTGGATTT GGCAGACATT GTTGCCAACA AATGGAAGTG ATGATCAAAG CTCGTTGCTA TTTTATTATG
CACCATGCAA GCCCTTGTAA TTTTGTATGC TACTACAACA CTTGTTGCTT CATTCCTTCT AAACACCTAC TGAGAAACAC
AGCCATCAAT TTTCTCTGCC TTCTCATTGT CCAATAAAAT TCTTACCTTC AAATCTCAAT CTTACACATG CTCGGTTTCA
GATATTTTAC ATTTCTAGAT TCTTTTTCTT TGCAAAACAA TTATAAATGG T

>Vigan.04G234400.01
CACCAATCAC AACCATTCAT TGCATGAGAG GCTATCCATA ATCTCATCCT CACTTACGCT CATGAGTCAC AGCCACACAT
CCACGTTGCC TCCTCTTGCT TCCCTATTAA ACTTTACAAC ACATAACAAC ATGGAACCTC ATTCTACTCT ACTGCTTCAC
TTCTGCTACA CAAAATCCAC TGCTCAAACA TGGCTTCGGC TACTCTCTCT GTAGCCAAAC CAGCTCTTCA GGCAAATGGG
AAAGGCTTCT CTGAGTTCTC TGGTCTTCGC AGCTCATCAA ACCACCTTCC CTTTTCCAGA AAAGCTTCTG AGGATTTCCA
TTCTGTCATT GCCTTCCAGA CTTATGCAGT TGGAAGCAGT GGAGGATACA AGAAGGGTGT GGTGGAAGCA AAATTGAAGG
TTGCCATAAA CGGATTTGGA AGAATTGGAA GGAACTTCTT GAGATGCTGG CACGGTCGTA AAGAGTCCCC TCTTGATGTC
ATTGCCATCA ACGACACTGG TGGTGTGAAA CAAGCCTCTC ACCTCCTCAA GTACGATTCT ATCCTTGGAA CCTTCGATGC
TGATGTCAAG CCTGTGGGCA GTGATATCAT CTCCGTTGAT GGAAAAGAAA TCAAAGTCGT CTCTGACCGT AACCCTGCCA
ACCTTCCTTG GAAGGAGTTG GGGATAGACT TGGTGATTGA AGGAACTGGG GTGTTTGTAG ACAGAGAAGG TGCTGGGAAA
CACATTCAAG CAGGAGCTAA GAAGGTACTC ATCACAGCAC CTGGTAAAGG AGACATCCCC ACCTATGTGG TCGGTGTCAA
TGAATATGAT TACAGCGCAG ATGAACCCAT CATCAGCAAT GCCTCTTGCA CCACTAACTG CCTTGCACCC TTTGTCAAGG
TCCTCGACCA GAAATTCGGT ATCATCAAGG GAACCATGAC AACCACTCAC TCTTACACCG GAGACCAGAG GCTTCTTGAT
GCGAGCCACC GTGACCTAAG GCGTGCTAGG GCCGCAGCTC TGAACATTGT CCCCACTTCA ACCGGAGCAG CAAAGGCGGT
GGCCCTTGTG CTGCCAACCC TGAAAGGGAA ACTGAACGGC ATTGCATTGC GTGTGCCAAC CCCAAATGTT TCAGTAGTGG
ACCTTGTCGT TCAGGTGTCA AAGAAGACCT TTGCAGAAGA AGTGAATGCA GCGTTCAGAG AGAGTGCAGA GAAGGAGCTG
AAGGGAATTC TGTCGGTGTG TGATGAGCCT CTTGTGTCTG TTGACTTCAG GTGCACTGAT GTGTCTTCAA CCGTTGACTC
CTCGTTGACC ATGGTGATGG GAGATGACAT GGTGAAGGTG ATTGCTTGGT ATGACAACGA GTGGGGCTAC TCCCAAAGGG
TTGTGGATTT GGCAGACATT GTTGCCAACA AATGGAAGTG ATGATCAAAG CTCGTTGCTA TTTTATTATG CACCATGCAA
GCCCTTGTAA TTTTGTATGC TACTACAACA CTTGTTGCTT CATTCCTTCT AAACACCTAC TGAGAAACAC AGCCATCAAT
TTTCTCTGCC TTCTCATTGT CCAATAAAAT TCTTACCTTC AAATCTCAAT CTTACACATG CTCGGTTTCA GATATTTTAC
ATTTCTAGAT TCTTTTTCTT TGCAAAACAA TTATAAATGG T

>Vigan.04G234400.01
ATGGCTTCGG CTACTCTCTC TGTAGCCAAA CCAGCTCTTC AGGCAAATGG GAAAGGCTTC TCTGAGTTCT CTGGTCTTCG
CAGCTCATCA AACCACCTTC CCTTTTCCAG AAAAGCTTCT GAGGATTTCC ATTCTGTCAT TGCCTTCCAG ACTTATGCAG
TTGGAAGCAG TGGAGGATAC AAGAAGGGTG TGGTGGAAGC AAAATTGAAG GTTGCCATAA ACGGATTTGG AAGAATTGGA
AGGAACTTCT TGAGATGCTG GCACGGTCGT AAAGAGTCCC CTCTTGATGT CATTGCCATC AACGACACTG GTGGTGTGAA
ACAAGCCTCT CACCTCCTCA AGTACGATTC TATCCTTGGA ACCTTCGATG CTGATGTCAA GCCTGTGGGC AGTGATATCA
TCTCCGTTGA TGGAAAAGAA ATCAAAGTCG TCTCTGACCG TAACCCTGCC AACCTTCCTT GGAAGGAGTT GGGGATAGAC
TTGGTGATTG AAGGAACTGG GGTGTTTGTA GACAGAGAAG GTGCTGGGAA ACACATTCAA GCAGGAGCTA AGAAGGTACT
CATCACAGCA CCTGGTAAAG GAGACATCCC CACCTATGTG GTCGGTGTCA ATGAATATGA TTACAGCGCA GATGAACCCA
TCATCAGCAA TGCCTCTTGC ACCACTAACT GCCTTGCACC CTTTGTCAAG GTCCTCGACC AGAAATTCGG TATCATCAAG
GGAACCATGA CAACCACTCA CTCTTACACC GGAGACCAGA GGCTTCTTGA TGCGAGCCAC CGTGACCTAA GGCGTGCTAG
GGCCGCAGCT CTGAACATTG TCCCCACTTC AACCGGAGCA GCAAAGGCGG TGGCCCTTGT GCTGCCAACC CTGAAAGGGA
AACTGAACGG CATTGCATTG CGTGTGCCAA CCCCAAATGT TTCAGTAGTG GACCTTGTCG TTCAGGTGTC AAAGAAGACC
TTTGCAGAAG AAGTGAATGC AGCGTTCAGA GAGAGTGCAG AGAAGGAGCT GAAGGGAATT CTGTCGGTGT GTGATGAGCC
TCTTGTGTCT GTTGACTTCA GGTGCACTGA TGTGTCTTCA ACCGTTGACT CCTCGTTGAC CATGGTGATG GGAGATGACA
TGGTGAAGGT GATTGCTTGG TATGACAACG AGTGGGGCTA CTCCCAAAGG GTTGTGGATT TGGCAGACAT TGTTGCCAAC
AAATGGAAGT GA

>Vigan.04G234400.01
MASATLSVAK PALQANGKGF SEFSGLRSSS NHLPFSRKAS EDFHSVIAFQ TYAVGSSGGY KKGVVEAKLK VAINGFGRIG
RNFLRCWHGR KESPLDVIAI NDTGGVKQAS HLLKYDSILG TFDADVKPVG SDIISVDGKE IKVVSDRNPA NLPWKELGID
LVIEGTGVFV DREGAGKHIQ AGAKKVLITA PGKGDIPTYV VGVNEYDYSA DEPIISNASC TTNCLAPFVK VLDQKFGIIK
GTMTTTHSYT GDQRLLDASH RDLRRARAAA LNIVPTSTGA AKAVALVLPT LKGKLNGIAL RVPTPNVSVV DLVVQVSKKT
FAEEVNAAFR ESAEKELKGI LSVCDEPLVS VDFRCTDVSS TVDSSLTMVM GDDMVKVIAW YDNEWGYSQR VVDLADIVAN
KWK*