GBrowse Details

Vigan.04G234300.01

Basic Information:
Name: Vigan.04G234300.01
Multiple alignment
Variant Information
Position: Chr04:34553824..34556134 (+ strand)
Length: 2311
Functional Information:
Description: Similar to Xyloglucan endotransglucosylase/hydrolase. [V7CWP6, Phaseolus vulgaris]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: cellular glucan metabolic process (GO:0006073)
Cellular Component: cell wall (GO:0005618)
Cellular Component: apoplast (GO:0048046)
Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553)
Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762)
InterPro: Glycoside hydrolase, family 16 (IPR000757)
Glycoside hydrolase, family 16, active site (IPR008263)
Concanavalin A-like lectin/glucanases superfamily (IPR008985)
Xyloglucan endo-transglycosylase, C-terminal (IPR010713)
Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
Xyloglucan endotransglucosylase/hydrolase (IPR016455)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.74,32.36,179.34,5.37,229.84,13.47, 44.68,36.47
Structure :
Position: Chr04:34553824..34554120 (+ strand)
Length: 297
Type: five_prime_UTR
Position: Chr04:34554121..34554307 (+ strand)
Length: 187
Type: CDS
Position: Chr04:34554478..34554578 (+ strand)
Length: 101
Type: CDS
Position: Chr04:34554749..34554942 (+ strand)
Length: 194
Type: CDS
Position: Chr04:34555248..34555647 (+ strand)
Length: 400
Type: CDS
Position: Chr04:34555648..34556134 (+ strand)
Length: 487
Type: three_prime_UTR

>Vigan.04G234300.01 class=Sequence position=Chr04:34553824..34556134 (+ strand)
TTCCAACACA AAATCCTAAC TAAAGCAAAT GCATGATTCT TTGTCTTCAT CTCTCTCTCA TCTGACATAA AACAAATCTT
AAATATATAT CATTAATCAT TATAACAAGC ATAAACTTGA TCGTTTTTGT TAAATGATGA AGCATGTATT ATTGAATTAA
ATATAAATTT ATGTTGAATA TTTAAAAAGA TAGAAAGTAG AGGGAAAGAG AGAGGAAGAA GGGTATTGGG CTAGGTGCAG
TGCTTATATA TACCCTTTTC TTAGCCATTA GCTTCCACAA ACAGATAAAC ACAGAAAATG GTTTCTTCTT TGTGGACCGT
GTCTCTGATA TTGGCATCGC TGGCCTCTGC AGCAGTTTGT GCCAACCCGA GGAGGCCAGT GGATGTACAA TTCGGTAGAA
ACTACGTTCC TACATGGGCT TTTGATCACA TCAAATACTT CAATGGTGGT TCTGAGATTC AGCTTCATCT TGACAAGTAC
ACTGGTAAGC ATAGTTTGGC CAAAATAGTG AAGTTTCACT GTCATACTTT TCAGTTCAAG TTATGTGTTC ATGCTGAAAT
TTCAAGATAA GAACTTTTTG TTTTTGAACA CTGTTTAGTT ATGTTAAAAG TGAGATTTGA ATCATATAAC AGCTTTCCAA
ACAACTTTGT ACAGGTACTG GCTTTCAGTC CAAAGGGTCA TACTTGTTTG GCCATTTCAG CATGTACATA AAGATGGTTC
CTGGAGATTC AGCTGGCACA GTCACTGCCT TCTATGTAAG GGCAGAATAA AAAAGAAAAA TGAGTTTTTT TCTTCTTTTT
TACTTCTAAA TTTACTTTCT GATATGAATG CGAACTTTGT TGTGAGCTGA ACCTACTGTT ATCTTCTCAA AACTAGTTTC
TATGGAGTCT TTGAATGTGA CATTTGTTAT GGTTGGAACC TGCAGTTATC TTCTCAAAAC GCGGAGCACG ATGAGATAGA
CTTTGAGTTC TTGGGGAACA GAACAGGACA ACCTTACATT TTGCAAACAA ATGTGTTCAC CGGAGGAAAG GGTGACAGAG
AGCAAAGAAT CTATCTCTGG TTTGACCCCA CCAAAGCATA TCACAGATAC TCTATTCTCT GGAACTTGTA TCAGATTGTG
TAAGCACCTC ACTTCACTCA ACTATTTTCA AACCCTTTTC AGTTCTCACC ATTTCTTGGA TAGTAGGAAG TAATTTTTGC
TGAGATGAGT TAGTTTCACC AGGAAAAAAG GAACAATATT CTTCATATAT TTAAATCTAG TCCCAAATGA ACCATATTAC
AAGTAAAACG GTCGTGTTTA CAGACTTATC AGTCACCACT TTCAACTATA ATAAATTCGG AAGATAACAT AAAAAGCCTA
AACTGAAAGA TGTTCATTGT TTGTAACTTT GTTTATGAGA AAGATTGAAA TGTGGGGTGT GCAGGTTCTT TGTTGACGAT
GTGCCGATCA GAGTGTTCAA GAACAGCAAG GACTTGAGAG TGAAGTTTCC ATTCGACCAA CCTATGAAGC TATACAACAG
TTTGTGGAAT GCTGATGACT GGGCAACAAG GGGTGGTTTG GAGAAAACAG ATTGGTCGAA AGCTCCTTTC GTAGCAGCGT
ACAAGGGGTT CCACATCGAT GGGTGCGAGG CCTCTGTGAA CGCTAAGTTC TGCGACACAC AGGGCAAGAG ATGGTGGGAC
CAACCAGAGT TTCGTGACCT TGACGCCGCT CAATGGCAAA GACTCAAATG GGTGCGTCAG AAATTCACCA TCTACAACTA
CTGCACTGAC AGAAAACGCT ACCCTCAACT TTCCCCTGAA TGCAGTAGAG ACCGCGACAT TTAAATTTTC ACATACTTCT
GTTACCATTT ACTTTTACCA GATTGTTGTC ACTTTCATGT ACAATTTTAT ATCACGTCAA ATCTATCCAT TGCCACTTTA
TTTATGAATT GAAATTTGCT TCAGATAAAA AAATAATAAA TAAACACAGT TTTTCTTAGA GAAAAAAGGT TTTAATCTGC
ATGTTTATCC TTTGAAGTGC AGCCACAGGT TTGTGGTATT ATTAATATTA TTGTTGCTGG TTTATTCCAC TGGTTCTTGG
TGATAATAAT GACATCTTGC AGAGCCAGTT GTATATTTTT TGTAGAGATC TGTGTTCTTT CGGTTTTCTA GGTGAATCAT
AGATCTGCGT TATGATCTCT GGTCCCGGAA ATGTAAAAGT AAAAGTGGTG CTATTCAATA TTTTGTTGCG GAAAAGACAC
TGGACCCGTT AACGTGGCAC CACTGGGCGA ACCCCATGTG AAGGCCATAT CAGAATTGTC GCAGTAAATA A

>Vigan.04G234300.01
TTCCAACACA AAATCCTAAC TAAAGCAAAT GCATGATTCT TTGTCTTCAT CTCTCTCTCA TCTGACATAA AACAAATCTT
AAATATATAT CATTAATCAT TATAACAAGC ATAAACTTGA TCGTTTTTGT TAAATGATGA AGCATGTATT ATTGAATTAA
ATATAAATTT ATGTTGAATA TTTAAAAAGA TAGAAAGTAG AGGGAAAGAG AGAGGAAGAA GGGTATTGGG CTAGGTGCAG
TGCTTATATA TACCCTTTTC TTAGCCATTA GCTTCCACAA ACAGATAAAC ACAGAAAATG GTTTCTTCTT TGTGGACCGT
GTCTCTGATA TTGGCATCGC TGGCCTCTGC AGCAGTTTGT GCCAACCCGA GGAGGCCAGT GGATGTACAA TTCGGTAGAA
ACTACGTTCC TACATGGGCT TTTGATCACA TCAAATACTT CAATGGTGGT TCTGAGATTC AGCTTCATCT TGACAAGTAC
ACTGGTACTG GCTTTCAGTC CAAAGGGTCA TACTTGTTTG GCCATTTCAG CATGTACATA AAGATGGTTC CTGGAGATTC
AGCTGGCACA GTCACTGCCT TCTATTTATC TTCTCAAAAC GCGGAGCACG ATGAGATAGA CTTTGAGTTC TTGGGGAACA
GAACAGGACA ACCTTACATT TTGCAAACAA ATGTGTTCAC CGGAGGAAAG GGTGACAGAG AGCAAAGAAT CTATCTCTGG
TTTGACCCCA CCAAAGCATA TCACAGATAC TCTATTCTCT GGAACTTGTA TCAGATTGTG TTCTTTGTTG ACGATGTGCC
GATCAGAGTG TTCAAGAACA GCAAGGACTT GAGAGTGAAG TTTCCATTCG ACCAACCTAT GAAGCTATAC AACAGTTTGT
GGAATGCTGA TGACTGGGCA ACAAGGGGTG GTTTGGAGAA AACAGATTGG TCGAAAGCTC CTTTCGTAGC AGCGTACAAG
GGGTTCCACA TCGATGGGTG CGAGGCCTCT GTGAACGCTA AGTTCTGCGA CACACAGGGC AAGAGATGGT GGGACCAACC
AGAGTTTCGT GACCTTGACG CCGCTCAATG GCAAAGACTC AAATGGGTGC GTCAGAAATT CACCATCTAC AACTACTGCA
CTGACAGAAA ACGCTACCCT CAACTTTCCC CTGAATGCAG TAGAGACCGC GACATTTAAA TTTTCACATA CTTCTGTTAC
CATTTACTTT TACCAGATTG TTGTCACTTT CATGTACAAT TTTATATCAC GTCAAATCTA TCCATTGCCA CTTTATTTAT
GAATTGAAAT TTGCTTCAGA TAAAAAAATA ATAAATAAAC ACAGTTTTTC TTAGAGAAAA AAGGTTTTAA TCTGCATGTT
TATCCTTTGA AGTGCAGCCA CAGGTTTGTG GTATTATTAA TATTATTGTT GCTGGTTTAT TCCACTGGTT CTTGGTGATA
ATAATGACAT CTTGCAGAGC CAGTTGTATA TTTTTTGTAG AGATCTGTGT TCTTTCGGTT TTCTAGGTGA ATCATAGATC
TGCGTTATGA TCTCTGGTCC CGGAAATGTA AAAGTAAAAG TGGTGCTATT CAATATTTTG TTGCGGAAAA GACACTGGAC
CCGTTAACGT GGCACCACTG GGCGAACCCC ATGTGAAGGC CATATCAGAA TTGTCGCAGT AAATAA

>Vigan.04G234300.01
ATGGTTTCTT CTTTGTGGAC CGTGTCTCTG ATATTGGCAT CGCTGGCCTC TGCAGCAGTT TGTGCCAACC CGAGGAGGCC
AGTGGATGTA CAATTCGGTA GAAACTACGT TCCTACATGG GCTTTTGATC ACATCAAATA CTTCAATGGT GGTTCTGAGA
TTCAGCTTCA TCTTGACAAG TACACTGGTA CTGGCTTTCA GTCCAAAGGG TCATACTTGT TTGGCCATTT CAGCATGTAC
ATAAAGATGG TTCCTGGAGA TTCAGCTGGC ACAGTCACTG CCTTCTATTT ATCTTCTCAA AACGCGGAGC ACGATGAGAT
AGACTTTGAG TTCTTGGGGA ACAGAACAGG ACAACCTTAC ATTTTGCAAA CAAATGTGTT CACCGGAGGA AAGGGTGACA
GAGAGCAAAG AATCTATCTC TGGTTTGACC CCACCAAAGC ATATCACAGA TACTCTATTC TCTGGAACTT GTATCAGATT
GTGTTCTTTG TTGACGATGT GCCGATCAGA GTGTTCAAGA ACAGCAAGGA CTTGAGAGTG AAGTTTCCAT TCGACCAACC
TATGAAGCTA TACAACAGTT TGTGGAATGC TGATGACTGG GCAACAAGGG GTGGTTTGGA GAAAACAGAT TGGTCGAAAG
CTCCTTTCGT AGCAGCGTAC AAGGGGTTCC ACATCGATGG GTGCGAGGCC TCTGTGAACG CTAAGTTCTG CGACACACAG
GGCAAGAGAT GGTGGGACCA ACCAGAGTTT CGTGACCTTG ACGCCGCTCA ATGGCAAAGA CTCAAATGGG TGCGTCAGAA
ATTCACCATC TACAACTACT GCACTGACAG AAAACGCTAC CCTCAACTTT CCCCTGAATG CAGTAGAGAC CGCGACATTT
AA

>Vigan.04G234300.01
MVSSLWTVSL ILASLASAAV CANPRRPVDV QFGRNYVPTW AFDHIKYFNG GSEIQLHLDK YTGTGFQSKG SYLFGHFSMY
IKMVPGDSAG TVTAFYLSSQ NAEHDEIDFE FLGNRTGQPY ILQTNVFTGG KGDREQRIYL WFDPTKAYHR YSILWNLYQI
VFFVDDVPIR VFKNSKDLRV KFPFDQPMKL YNSLWNADDW ATRGGLEKTD WSKAPFVAAY KGFHIDGCEA SVNAKFCDTQ
GKRWWDQPEF RDLDAAQWQR LKWVRQKFTI YNYCTDRKRY PQLSPECSRD RDI*