GBrowse Details

Vigan.04G234200.01

Basic Information:
Name: Vigan.04G234200.01
Multiple alignment
Variant Information
Position: Chr04:34545348..34546998 (+ strand)
Length: 1651
Functional Information:
Description: Similar to xyloglucan endotransglucosylase/hydrolase protein B. [Q8LNZ5, Phaseolus angularis]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: cellular glucan metabolic process (GO:0006073)
Cellular Component: cell wall (GO:0005618)
Cellular Component: apoplast (GO:0048046)
Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553)
Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762)
InterPro: Glycoside hydrolase, family 16 (IPR000757)
Glycoside hydrolase, family 16, active site (IPR008263)
Concanavalin A-like lectin/glucanases superfamily (IPR008985)
Xyloglucan endo-transglycosylase, C-terminal (IPR010713)
Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
Xyloglucan endotransglucosylase/hydrolase (IPR016455)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.80,0.13,701.57,1.10,0.65,2.78,3.02 ,12.30
Arabidopsis thaliana homolog: AT5G13870.1
Automatic updates:
Name: NM_001253317 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable xyloglucan endotransglucosylase/hydrolase protein B-like (LOC100779122), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001253317 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max xyloglucan endotransglucosylase/hydrolase protein B-like (LOC100779122), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:34545348..34545527 (+ strand)
Length: 180
Type: five_prime_UTR
Position: Chr04:34545528..34545714 (+ strand)
Length: 187
Type: CDS
Position: Chr04:34545807..34545907 (+ strand)
Length: 101
Type: CDS
Position: Chr04:34546004..34546197 (+ strand)
Length: 194
Type: CDS
Position: Chr04:34546284..34546683 (+ strand)
Length: 400
Type: CDS
Position: Chr04:34546684..34546998 (+ strand)
Length: 315
Type: three_prime_UTR

>Vigan.04G234200.01 class=Sequence position=Chr04:34545348..34546998 (+ strand)
GTTACTTCTA GCTTTCGAAG ATCATAATCA TGAACAGAAA TATACCTAAT GAACAGAAAG AAAACTCCTG TGGCAGAGAT
GAACGAAGAA GCAAACTTCC AAAGCACGGT GATGTGTCTA TATATATATT CCCATTAGCC TCAAAGACTT TCACAACACT
TTCATCTTTC CCTTGTTAAC ATGGCTTCTT CTTTGTTGAT TTTGTGTCTT GTTCTGGTTT CGCTAGCCTC TTCTGCACTC
TGTGCCGCCC CACGGAGACC AGTGGATGTT CCATTTGGCA GAAACTACAT TCCCACATGG GCTTTCGATC ACATCAAATA
CTTCAATGGG GGTTCTGAGA TTCAACTTCA TCTTGACAAG TACACTGGTA CGTAATATAT GAACAAAGTT CAGCCTTATC
ATCTACTTAG TTCTAACAAA GTTGGTATTT TTAATGTTAA TTCACGCAAA TTTGAACAGG CACTGGTTTC CAAACAAAAG
GGTCCTATCT GTTTGGTCAC TTCAGCATGA ACATAAAGAT GGTTCCTGGT GATTCAGCTG GCACAGTCAC TGCTTTTTAT
GTAAGCACAT ATTTTTATTC TAGTACAGTC TCATTGTTAT ATCAGTAGAT TATATGAGTC ATGCAGTTGT TGATTTGCTA
CGATTGGAAC ATGCAGTTAT CATCTCAAAA CGCGGAGCAC GATGAGATAG ACTTTGAGTT CTTGGGGAAC AGAACAGGAC
AACCTTACAT TTTACAGACA AATGTGTTCA CTGGAGGGAA GGGTGACAGA GAGCAAAGAA TCTATCTTTG GTTTGATCCC
ACAAAAGCGT ATCACAGATA TTCTGTACTA TGGAACATGT ATCAAATTGT GTAAGTATTT CAATTCTATT TTGGTATATA
AAAGTAACGA ACACAGACAT GAGTAATTAA AGTGTAGCAT GTTTGAAATT ACACAGATTC CTAGTGGATA ACATCCCAAT
CAGGGTGTTC AAGAACCTGA AGGAGTTGGG AGTGAAGTTT CCCTTTAACC AACCGATGAA GGTTTACAAC AGTTTATGGA
ATGCTGATGA TTGGGCCACA AGGGGTGGTT TGGAGAAAAC AGATTGGTCA AAAGCTCCAT TCGTAGCAGA GTACAAGGGG
TTTCATGTTG ATGGGTGTGA GGCTTCAGTG AATTCAAGGT TCTGTGCCAC ACAGGGTAAG AGATGGTGGG ATCAAACAGA
GTTTCGTGAT CTTGATTCCT TTCAGTGGCG AAGACTCAAA TGGGTGCGTC AGAAATTCAC CATCTACAAC TACTGCACTG
ACAGAACCCG CTACCCTCAA CTTCCACCAG AATGCAGAAG AAACCGTGAC ATTTAAATTT TCATCTGCTG TTTTTATCAC
TTATTTCTGT GTTCTACAAC AACTTTCTCA CTGCATTCAT CATTTACCAG TTACCATACT TTATTCCTAC CATTATTTAT
TACCATTGTA TTGTTTGGAA TGTGTAATTA AGGCCTTGGG TCTGAATACA GAGGAAACTC TATAATAAAA CTACGTATGT
TATGTAATTC TATTCTTATA CTTGGCACCA CCAATAATGT AATATTGAAT TCTTATTATT GTACTTAAAG CATGTTCTGT
TCCTTAATGG TAACAACAAC ATCTTGATGC TGCATTCATT TCCGATCTCG A

>Vigan.04G234200.01
GTTACTTCTA GCTTTCGAAG ATCATAATCA TGAACAGAAA TATACCTAAT GAACAGAAAG AAAACTCCTG TGGCAGAGAT
GAACGAAGAA GCAAACTTCC AAAGCACGGT GATGTGTCTA TATATATATT CCCATTAGCC TCAAAGACTT TCACAACACT
TTCATCTTTC CCTTGTTAAC ATGGCTTCTT CTTTGTTGAT TTTGTGTCTT GTTCTGGTTT CGCTAGCCTC TTCTGCACTC
TGTGCCGCCC CACGGAGACC AGTGGATGTT CCATTTGGCA GAAACTACAT TCCCACATGG GCTTTCGATC ACATCAAATA
CTTCAATGGG GGTTCTGAGA TTCAACTTCA TCTTGACAAG TACACTGGCA CTGGTTTCCA AACAAAAGGG TCCTATCTGT
TTGGTCACTT CAGCATGAAC ATAAAGATGG TTCCTGGTGA TTCAGCTGGC ACAGTCACTG CTTTTTATTT ATCATCTCAA
AACGCGGAGC ACGATGAGAT AGACTTTGAG TTCTTGGGGA ACAGAACAGG ACAACCTTAC ATTTTACAGA CAAATGTGTT
CACTGGAGGG AAGGGTGACA GAGAGCAAAG AATCTATCTT TGGTTTGATC CCACAAAAGC GTATCACAGA TATTCTGTAC
TATGGAACAT GTATCAAATT GTATTCCTAG TGGATAACAT CCCAATCAGG GTGTTCAAGA ACCTGAAGGA GTTGGGAGTG
AAGTTTCCCT TTAACCAACC GATGAAGGTT TACAACAGTT TATGGAATGC TGATGATTGG GCCACAAGGG GTGGTTTGGA
GAAAACAGAT TGGTCAAAAG CTCCATTCGT AGCAGAGTAC AAGGGGTTTC ATGTTGATGG GTGTGAGGCT TCAGTGAATT
CAAGGTTCTG TGCCACACAG GGTAAGAGAT GGTGGGATCA AACAGAGTTT CGTGATCTTG ATTCCTTTCA GTGGCGAAGA
CTCAAATGGG TGCGTCAGAA ATTCACCATC TACAACTACT GCACTGACAG AACCCGCTAC CCTCAACTTC CACCAGAATG
CAGAAGAAAC CGTGACATTT AAATTTTCAT CTGCTGTTTT TATCACTTAT TTCTGTGTTC TACAACAACT TTCTCACTGC
ATTCATCATT TACCAGTTAC CATACTTTAT TCCTACCATT ATTTATTACC ATTGTATTGT TTGGAATGTG TAATTAAGGC
CTTGGGTCTG AATACAGAGG AAACTCTATA ATAAAACTAC GTATGTTATG TAATTCTATT CTTATACTTG GCACCACCAA
TAATGTAATA TTGAATTCTT ATTATTGTAC TTAAAGCATG TTCTGTTCCT TAATGGTAAC AACAACATCT TGATGCTGCA
TTCATTTCCG ATCTCGA

>Vigan.04G234200.01
ATGGCTTCTT CTTTGTTGAT TTTGTGTCTT GTTCTGGTTT CGCTAGCCTC TTCTGCACTC TGTGCCGCCC CACGGAGACC
AGTGGATGTT CCATTTGGCA GAAACTACAT TCCCACATGG GCTTTCGATC ACATCAAATA CTTCAATGGG GGTTCTGAGA
TTCAACTTCA TCTTGACAAG TACACTGGCA CTGGTTTCCA AACAAAAGGG TCCTATCTGT TTGGTCACTT CAGCATGAAC
ATAAAGATGG TTCCTGGTGA TTCAGCTGGC ACAGTCACTG CTTTTTATTT ATCATCTCAA AACGCGGAGC ACGATGAGAT
AGACTTTGAG TTCTTGGGGA ACAGAACAGG ACAACCTTAC ATTTTACAGA CAAATGTGTT CACTGGAGGG AAGGGTGACA
GAGAGCAAAG AATCTATCTT TGGTTTGATC CCACAAAAGC GTATCACAGA TATTCTGTAC TATGGAACAT GTATCAAATT
GTATTCCTAG TGGATAACAT CCCAATCAGG GTGTTCAAGA ACCTGAAGGA GTTGGGAGTG AAGTTTCCCT TTAACCAACC
GATGAAGGTT TACAACAGTT TATGGAATGC TGATGATTGG GCCACAAGGG GTGGTTTGGA GAAAACAGAT TGGTCAAAAG
CTCCATTCGT AGCAGAGTAC AAGGGGTTTC ATGTTGATGG GTGTGAGGCT TCAGTGAATT CAAGGTTCTG TGCCACACAG
GGTAAGAGAT GGTGGGATCA AACAGAGTTT CGTGATCTTG ATTCCTTTCA GTGGCGAAGA CTCAAATGGG TGCGTCAGAA
ATTCACCATC TACAACTACT GCACTGACAG AACCCGCTAC CCTCAACTTC CACCAGAATG CAGAAGAAAC CGTGACATTT
AA

>Vigan.04G234200.01
MASSLLILCL VLVSLASSAL CAAPRRPVDV PFGRNYIPTW AFDHIKYFNG GSEIQLHLDK YTGTGFQTKG SYLFGHFSMN
IKMVPGDSAG TVTAFYLSSQ NAEHDEIDFE FLGNRTGQPY ILQTNVFTGG KGDREQRIYL WFDPTKAYHR YSVLWNMYQI
VFLVDNIPIR VFKNLKELGV KFPFNQPMKV YNSLWNADDW ATRGGLEKTD WSKAPFVAEY KGFHVDGCEA SVNSRFCATQ
GKRWWDQTEF RDLDSFQWRR LKWVRQKFTI YNYCTDRTRY PQLPPECRRN RDI*