GBrowse Details

Vigan.04G185300.01

Basic Information:
Name: Vigan.04G185300.01
Multiple alignment
Variant Information
Position: Chr04:26844577..26848310 (- strand)
Length: 3734
Functional Information:
Description: Similar to Uncharacterized protein. [I1N2H6, Glycine max]
GO: Biological Process: plant-type cell wall organization (GO:0009664)
Cellular Component: extracellular region (GO:0005576)
InterPro: Expansin (IPR002963)
Expansin/pollen allergen, DPBB domain (IPR007112)
Expansin, cellulose-binding-like domain (IPR007117)
Expansin/Lol pI (IPR007118)
RlpA-like double-psi beta-barrel domain (IPR009009)
Barwin-like endoglucanase (IPR014733)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.07,1.46,23.51,4.11,2.96,25.60,4.85 ,9.82
Automatic updates:
Name: NM_001249621 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max expansin (EXP2), mRNA.
PubMed ID: 26432877 NCBI(pubmed)
21261763 NCBI(pubmed)
12644651 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:26844577..26845012 (- strand)
Length: 436
Type: three_prime_UTR
Position: Chr04:26845013..26845322 (- strand)
Length: 310
Type: CDS
Position: Chr04:26846385..26846703 (- strand)
Length: 319
Type: CDS
Position: Chr04:26847442..26847589 (- strand)
Length: 148
Type: CDS
Position: Chr04:26847590..26848310 (- strand)
Length: 721
Type: five_prime_UTR

>Vigan.04G185300.01 class=Sequence position=Chr04:26844577..26848310 (- strand)
CTTCAAATTT AACGTAACCA TCATTGAAAA CACTGAACAA AACATGCATT CTTCTACCTA TTACGTTTTT CATGGGAGTG
GGTTCCAATG ACAAGGTTGT CCTGTAGTAA ATTTTATTGA AGGACAAAAA TTGGAAGTTA AAGAAGGTTT TATGATAAGA
TAAGCTAAAA GGGACTGCAC TTTCCTTGTG TTGTAGAGAA CATGAACAAT CATGGTTTTG GTGTGAAATG AAGAAGGGTC
CTTCCCTATT TCACGTCAAA TTCCTGCCAT GTCTTGCCAT GATGCATCAT CATGTGGTGC CTCAACTTGC CTTTGTCACT
CACCCAAACA GTTTTATCAT GAGGGACTAG CATGTGTGAT GCACATGCAT ATCAATTCAT GGTGCATAAA TTAATTGGGT
GCCCAAAACA TTCCTTGCAT AAAAAGAAAA AGAAAAGAAA ACTTCAACCA ATTAAATTAT TTGCTGGAAA AAAAAAATGA
ATAAGATAAA GTAGCCTCAA AATAAGGTAC CATAGAGAGA GAAGCAAGAA AGTAAAAAGA AGCTAAGTTA CCATGACAGT
AATAGTTAGT TCAGAAACTA CTGCACCTGT AAGTCCATCA CACTCCCCTC CCTCCATAAG TACCCCCCTT CCCTTCTCAC
TTTCCACTCA CTCTCAAATC AACAAAACCA ACCTACTGCT TCTCTCTCTC CCTCTCTCCC TCTCTCTCTC TCTCTCTTCC
AATGGCTGCC ATTGTTTTCC TCCACATTGC TTCATTGGTT TCTCTTTTTG TTTCAACAAC TGCAAGAATC CCTGGAGTTT
ACACTGGTGG CTCCTGGCAG AGTGCTCATG CCACTTTCTA TGGTGGCAGT GATGCCTCTG GAACAATGGG TAAAACCCTT
TTCTTTATCT CATTCTTCAT CATCCCCCAT TACATCTCAC CTCTGTTTTC TCTGTTTTCC TCTGTTTTCC TCTGTTTTCT
CTGTTTTCTA CTACCCTAAC ACTCTTTCTC TATCCTCGTG TTCATCAACA ATTCCCACGT TGCATTTTCA ATTTTGCATC
ACTCTCTTAA CCATTTTGAA GCATTCCAAA GCAAGCCATC ATTCTTTCAC CCATCAAAAT CTTCTCCTTT ATGATCAATT
CCCCAGACCC ATTCAACTTT CTCCTTAATT TTACCCAAAT GTACACCCAA AAGTGTTCTC TTTTATCACC AATTTTCCAT
ACTCGTACAA TTTTCTCTTT AGTTTTTCAC AAATGGACAC CCAAAGTGTT CTTTTTCGTC GTTTCTTCGA TTCAAGCTTT
TAAAAGCTGC AATTTTTTTT TTCACAACCC TCCTTGATTC AAGGGAAAGA TTACACATGA ATGCAGCTAA TGTAACCACG
ATTGTAATGA CAGAATCACG AAAACCTTGA TGTTACTGTC ACAACACAAT TGCAGTTACA TACAGTGTTT TAAAACCTTA
CCTCAAACTC AACACCTCTT ACACCCAAAC CTGTAAAATC TCAACCCAAC CACTCTCTAG TGAGAAACAA AACAAAACCT
CAAACCCTTC TTGAAAAACA TCTAGCAATT CATTTCTTTT TAATTTTGAA CCAACCCTTA AACGATTTTC TTCTTTTGTT
ACTTCAGGTG GTGCTTGTGG GTACGGCAAC CTGTACAGCC AAGGCTACGG CGTGAGCACG GCGGCGCTGA GCACGGCACT
GTTCAACAAC GGTTTGAGCT GCGGCGCGTG CTTTGAGATC AAGTGCGACC AGGATCCGCG GTGGTGCAAC CCCGGCAACC
CTTCGATCTT GATCACTGCC ACCAACTTCT GCCCTCCCAA CTTCGCTCTT CCCAATGATA ATGGTGGCTG GTGCAACCCT
CCTCGCCCAC ACTTCGACCT TGCCATGCCA ATGTTCCTCA AGATCGCCCA GTACCGCGCC GGAATCGTCC CCGTCGCATA
TCGCCGGTGA GTCCCACCAC CCCTCTTGTG AGTACCTTAA TTGGGTGCTT TCAAGTTTTC TCCTTTCCGT GTGTTTTCAC
CGTTTGGGTG CCAAGAAAAT GTATGAAAAC CGTGAGAATA TTTAATTATT ATGAAACCAG AAAACGAAAA AAAAGTTTTA
CACCGTTATT ACATAGCAAA CGACCATGCA TAATTTATTA TTAGTCATTA TCATAACTAT TTTTAAAATT ATTTTTAAAA
AAAAGTCGCA AATACAAACT TACAATTGTT GTTTAAATTT TTTTTAACTA AATAATATAA AGTGTTTTCT ATAAGTAGAG
ATGGTAAACA AGCTCTTTTC CTACCAAAAC TAGAGAAACA ATTCTTAAAA GAAGAGCCTT AAAACTGCTA CAAGTTCCCA
TCACGGAATG GAATTCTACT AATATGAATT TGCATTCTAC ACACAAAACA CAACAAAACT CTTCTGATAT TTTTCTTGCC
TGTGCTCTCA TTTTCATGGA AAACAAACAA AAGTTTCTAT CAGAATTCCC CCTGCAGTTT TCATCAGAGT CCCCAATCAG
ATATTTTGTC CTCTACACAG CACAAACCTA CACAATTAGC CGTTAGGTAT TTACTAGTTG AGTTCTCAAA CAATTTGCAA
TGCATGGTCA CAAAACTTTA AATTCACACC GATTAAATAC ATGATTCATT TTTAACTATT AAACTTTTCC TTAATTTTGA
ACACTATTTG TAAGATTAAT GTGTTGTCAA TTCTGCAAGA TAACACCATT ACCAACTCTT CTAGGGGTAA TATAGTCATC
CAAATACTAG ATCTGCAAAT TACTCACTAC TTCGAGGGCA CGTTAGTAAA ATCAACCCCG CAAAGAAAAT TAATGAATTT
CCAGAAAATC AGGGGCTAAA GCCTAAAAAA CAAAGTTTGA AGTTCGACCC ATAAATTGAA ATTGCCAAAA ACAGAGTCAG
AGTGATGTAT GATTTTTTAT TTTGTTTTCA TTTGAATTAC TTTAATAAAT TATTTACAAT CAGAAAGAAA AGTGTGAAAT
TAAAATATGA TTTGATTTTT GGGTGCAGGG TGGCATGCAG AAAGACAGGA GGCATCAGAT TCACAATCAA CGGTTTCCGT
TACTTCAACC TGGTGCTGAT CACCAACGTC GCGGGTGCAG GGGATATCGT GCGCGTGAGT GTTAAAGGAA GCAAAACCGC
GTGGATGAGC ATGAGCCGTA ACTGGGGGCA AAATTGGCAA TCGAACGCGG TTTTGGTGGG CCAGGCCCTC TCCTTTAGGG
TTACCGGCAG TGACCGTCGT ACTTCAACCT CCTGGAACGT GGCACCACCT AATTGGCAGT TCGGACAAAC CTTCACCGGG
AAGAATTTCA GGGTTTAAAT GAAAGGGAGA AAGAAAATAA CTATACCCCT AATATTTTTG AGTTGTTTGT TTGTTTCCGT
TTCTCCCCTT CTTCTGACTT TCCTCTATTT ACCCGGAATG TCTAGGATTA GGGTTAGGAT TAAAAAAGTA AAAATGTAGT
TTTAGGAGGA GTAAAAGTGA AAGTAAGGTT ATTTATATTA TAATAAAATA ATAAAAATAG GTAATATAAA TGTAAGTGGG
GGTGTTTGCA TTAAATATGA ATTATTTAAT GTATGGGCAA TGTTGGAATA TTAATTACCC AACATTAGCA ACCCTTATTT
TTCTTTTGTT TTTTTATTTC AAGTGTGAGG GGCTGAGGAG GTTGCAAGGA GGAACATGTA GCCCGCAGCT CTGGCTTTAA
TGTTCACATA AATGTACTAC CATATAATAA ATATAAAATA AAACAATATT TCAG

>Vigan.04G185300.01
CTTCAAATTT AACGTAACCA TCATTGAAAA CACTGAACAA AACATGCATT CTTCTACCTA TTACGTTTTT CATGGGAGTG
GGTTCCAATG ACAAGGTTGT CCTGTAGTAA ATTTTATTGA AGGACAAAAA TTGGAAGTTA AAGAAGGTTT TATGATAAGA
TAAGCTAAAA GGGACTGCAC TTTCCTTGTG TTGTAGAGAA CATGAACAAT CATGGTTTTG GTGTGAAATG AAGAAGGGTC
CTTCCCTATT TCACGTCAAA TTCCTGCCAT GTCTTGCCAT GATGCATCAT CATGTGGTGC CTCAACTTGC CTTTGTCACT
CACCCAAACA GTTTTATCAT GAGGGACTAG CATGTGTGAT GCACATGCAT ATCAATTCAT GGTGCATAAA TTAATTGGGT
GCCCAAAACA TTCCTTGCAT AAAAAGAAAA AGAAAAGAAA ACTTCAACCA ATTAAATTAT TTGCTGGAAA AAAAAAATGA
ATAAGATAAA GTAGCCTCAA AATAAGGTAC CATAGAGAGA GAAGCAAGAA AGTAAAAAGA AGCTAAGTTA CCATGACAGT
AATAGTTAGT TCAGAAACTA CTGCACCTGT AAGTCCATCA CACTCCCCTC CCTCCATAAG TACCCCCCTT CCCTTCTCAC
TTTCCACTCA CTCTCAAATC AACAAAACCA ACCTACTGCT TCTCTCTCTC CCTCTCTCCC TCTCTCTCTC TCTCTCTTCC
AATGGCTGCC ATTGTTTTCC TCCACATTGC TTCATTGGTT TCTCTTTTTG TTTCAACAAC TGCAAGAATC CCTGGAGTTT
ACACTGGTGG CTCCTGGCAG AGTGCTCATG CCACTTTCTA TGGTGGCAGT GATGCCTCTG GAACAATGGG TGGTGCTTGT
GGGTACGGCA ACCTGTACAG CCAAGGCTAC GGCGTGAGCA CGGCGGCGCT GAGCACGGCA CTGTTCAACA ACGGTTTGAG
CTGCGGCGCG TGCTTTGAGA TCAAGTGCGA CCAGGATCCG CGGTGGTGCA ACCCCGGCAA CCCTTCGATC TTGATCACTG
CCACCAACTT CTGCCCTCCC AACTTCGCTC TTCCCAATGA TAATGGTGGC TGGTGCAACC CTCCTCGCCC ACACTTCGAC
CTTGCCATGC CAATGTTCCT CAAGATCGCC CAGTACCGCG CCGGAATCGT CCCCGTCGCA TATCGCCGGG TGGCATGCAG
AAAGACAGGA GGCATCAGAT TCACAATCAA CGGTTTCCGT TACTTCAACC TGGTGCTGAT CACCAACGTC GCGGGTGCAG
GGGATATCGT GCGCGTGAGT GTTAAAGGAA GCAAAACCGC GTGGATGAGC ATGAGCCGTA ACTGGGGGCA AAATTGGCAA
TCGAACGCGG TTTTGGTGGG CCAGGCCCTC TCCTTTAGGG TTACCGGCAG TGACCGTCGT ACTTCAACCT CCTGGAACGT
GGCACCACCT AATTGGCAGT TCGGACAAAC CTTCACCGGG AAGAATTTCA GGGTTTAAAT GAAAGGGAGA AAGAAAATAA
CTATACCCCT AATATTTTTG AGTTGTTTGT TTGTTTCCGT TTCTCCCCTT CTTCTGACTT TCCTCTATTT ACCCGGAATG
TCTAGGATTA GGGTTAGGAT TAAAAAAGTA AAAATGTAGT TTTAGGAGGA GTAAAAGTGA AAGTAAGGTT ATTTATATTA
TAATAAAATA ATAAAAATAG GTAATATAAA TGTAAGTGGG GGTGTTTGCA TTAAATATGA ATTATTTAAT GTATGGGCAA
TGTTGGAATA TTAATTACCC AACATTAGCA ACCCTTATTT TTCTTTTGTT TTTTTATTTC AAGTGTGAGG GGCTGAGGAG
GTTGCAAGGA GGAACATGTA GCCCGCAGCT CTGGCTTTAA TGTTCACATA AATGTACTAC CATATAATAA ATATAAAATA
AAACAATATT TCAG

>Vigan.04G185300.01
ATGGCTGCCA TTGTTTTCCT CCACATTGCT TCATTGGTTT CTCTTTTTGT TTCAACAACT GCAAGAATCC CTGGAGTTTA
CACTGGTGGC TCCTGGCAGA GTGCTCATGC CACTTTCTAT GGTGGCAGTG ATGCCTCTGG AACAATGGGT GGTGCTTGTG
GGTACGGCAA CCTGTACAGC CAAGGCTACG GCGTGAGCAC GGCGGCGCTG AGCACGGCAC TGTTCAACAA CGGTTTGAGC
TGCGGCGCGT GCTTTGAGAT CAAGTGCGAC CAGGATCCGC GGTGGTGCAA CCCCGGCAAC CCTTCGATCT TGATCACTGC
CACCAACTTC TGCCCTCCCA ACTTCGCTCT TCCCAATGAT AATGGTGGCT GGTGCAACCC TCCTCGCCCA CACTTCGACC
TTGCCATGCC AATGTTCCTC AAGATCGCCC AGTACCGCGC CGGAATCGTC CCCGTCGCAT ATCGCCGGGT GGCATGCAGA
AAGACAGGAG GCATCAGATT CACAATCAAC GGTTTCCGTT ACTTCAACCT GGTGCTGATC ACCAACGTCG CGGGTGCAGG
GGATATCGTG CGCGTGAGTG TTAAAGGAAG CAAAACCGCG TGGATGAGCA TGAGCCGTAA CTGGGGGCAA AATTGGCAAT
CGAACGCGGT TTTGGTGGGC CAGGCCCTCT CCTTTAGGGT TACCGGCAGT GACCGTCGTA CTTCAACCTC CTGGAACGTG
GCACCACCTA ATTGGCAGTT CGGACAAACC TTCACCGGGA AGAATTTCAG GGTTTAA

>Vigan.04G185300.01
MAAIVFLHIA SLVSLFVSTT ARIPGVYTGG SWQSAHATFY GGSDASGTMG GACGYGNLYS QGYGVSTAAL STALFNNGLS
CGACFEIKCD QDPRWCNPGN PSILITATNF CPPNFALPND NGGWCNPPRP HFDLAMPMFL KIAQYRAGIV PVAYRRVACR
KTGGIRFTIN GFRYFNLVLI TNVAGAGDIV RVSVKGSKTA WMSMSRNWGQ NWQSNAVLVG QALSFRVTGS DRRTSTSWNV
APPNWQFGQT FTGKNFRV*